Wall clock time and date at job start Mon Mar 30 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34850 * 126.64992 * 2 1 4 4 C 1.50701 * 125.96751 * 0.02748 * 3 2 1 5 5 C 1.53000 * 109.47423 * 120.00516 * 4 3 2 6 6 C 1.53004 * 109.47273 * 240.00365 * 4 3 2 7 7 N 1.34299 * 108.07344 * 180.02562 * 3 2 1 8 8 C 1.30090 * 109.20624 * 0.03839 * 7 3 2 9 9 N 1.35420 * 108.63190 * 359.91475 * 8 7 3 10 10 C 1.46469 * 124.82753 * 180.14681 * 9 8 7 11 11 C 1.53264 * 108.79474 * 17.11746 * 10 9 8 12 12 C 1.53151 * 109.48900 * 309.61739 * 11 10 9 13 13 C 1.51040 * 127.39339 * 179.91880 * 8 7 3 14 14 H 1.09005 * 109.71779 * 76.24830 * 13 8 7 15 15 C 1.50704 * 109.71249 * 315.61374 * 13 8 7 16 16 H 1.08000 * 119.99666 * 241.24104 * 15 13 8 17 17 C 1.37878 * 120.00194 * 61.24270 * 15 13 8 18 18 N 1.31518 * 119.99930 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00269 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47301 * 89.99987 * 19 17 15 21 21 H 1.48499 * 109.47481 * 210.00023 * 19 17 15 22 22 H 1.48506 * 109.46912 * 330.00014 * 19 17 15 23 23 H 1.08998 * 109.47014 * 89.98439 * 1 2 3 24 24 H 1.09000 * 109.47018 * 209.97912 * 1 2 3 25 25 H 1.09000 * 109.47516 * 329.98101 * 1 2 3 26 26 H 1.08993 * 109.47282 * 0.02562 * 4 3 2 27 27 H 1.09003 * 109.47060 * 59.99559 * 5 4 3 28 28 H 1.08992 * 109.47621 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.46503 * 300.00405 * 5 4 3 30 30 H 1.09004 * 109.47210 * 59.99626 * 6 4 3 31 31 H 1.08998 * 109.47355 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47332 * 300.00400 * 6 4 3 33 33 H 1.08996 * 109.58787 * 257.31889 * 10 9 8 34 34 H 1.09003 * 109.57843 * 136.90719 * 10 9 8 35 35 H 1.09002 * 109.46912 * 189.60945 * 11 10 9 36 36 H 1.08998 * 109.46612 * 69.62023 * 11 10 9 37 37 H 1.09000 * 109.50790 * 189.42437 * 12 11 10 38 38 H 1.09009 * 109.50558 * 309.56074 * 12 11 10 39 39 H 0.96998 * 120.00301 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3120 1.0819 0.0000 4 6 1.8618 2.5201 0.0006 5 6 2.3983 3.2220 1.2497 6 6 2.3971 3.2227 -1.2487 7 7 3.5850 0.6541 -0.0006 8 6 3.5993 -0.6468 -0.0017 9 7 2.3209 -1.0935 -0.0001 10 6 1.9279 -2.5045 0.0024 11 6 3.1315 -3.3516 0.4298 12 6 4.3543 -2.9598 -0.4050 13 6 4.8093 -1.5508 -0.0044 14 1 5.2515 -1.5763 0.9916 15 6 5.8218 -1.0419 -0.9980 16 1 6.1150 -1.6591 -1.8343 17 6 6.3738 0.2115 -0.8392 18 7 6.0172 0.9629 0.1796 19 14 7.6282 0.8426 -2.0710 20 1 6.9286 1.5617 -3.1658 21 1 8.5672 1.7702 -1.3904 22 1 8.3863 -0.3025 -2.6362 23 1 -0.3633 0.0003 -1.0276 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3634 0.8898 0.5141 26 1 0.7726 2.5598 0.0015 27 1 3.4876 3.1822 1.2493 28 1 2.0730 4.2623 1.2500 29 1 2.0169 2.7214 2.1397 30 1 2.0150 2.7226 -2.1387 31 1 2.0711 4.2627 -1.2486 32 1 3.4864 3.1829 -1.2493 33 1 1.6119 -2.7975 -0.9987 34 1 1.1079 -2.6540 0.7049 35 1 2.9073 -4.4067 0.2728 36 1 3.3414 -3.1780 1.4852 37 1 5.1618 -3.6688 -0.2226 38 1 4.0914 -2.9706 -1.4628 39 1 6.4052 1.8448 0.2912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:58 Heat of formation + Delta-G solvation = 28.545097 kcal Electronic energy + Delta-G solvation = -19221.990461 eV Core-core repulsion = 16550.236922 eV Total energy + Delta-G solvation = -2671.753539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.77678 -37.78804 -35.71582 -35.16790 -33.25420 -31.35279 -30.11163 -27.89736 -26.95672 -26.56663 -24.13436 -22.98413 -21.88664 -19.78356 -19.49830 -18.39643 -16.82327 -16.61404 -16.31734 -15.79568 -15.22967 -14.86335 -14.72304 -14.48594 -13.86083 -13.82519 -13.69856 -13.58673 -13.39852 -13.00064 -12.98408 -12.78965 -12.62740 -12.34353 -12.03977 -11.95540 -11.83302 -11.66414 -11.56060 -11.32794 -11.00782 -10.43751 -9.80467 -9.66686 -8.41555 -7.85504 -6.02168 1.39976 1.42455 1.49813 1.55255 2.33937 2.50178 2.88819 3.42208 3.80846 3.98448 3.99580 4.10048 4.20847 4.33163 4.45152 4.47110 4.52871 4.57060 4.70073 4.77015 4.82873 4.86383 4.92012 4.97235 5.06231 5.08954 5.09613 5.15539 5.22984 5.31883 5.45473 5.49324 5.63526 5.72075 5.89939 6.00350 6.33364 6.49242 6.81427 7.06968 7.62168 8.12436 9.13250 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.011926 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.205122 B = 2347.307566 C = 3688.533163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.067 4.067 3 C -0.054 4.054 4 C 0.000 4.000 5 C -0.125 4.125 6 C -0.126 4.126 7 N -0.447 5.447 8 C 0.217 3.783 9 N -0.475 5.475 10 C 0.104 3.896 11 C -0.124 4.124 12 C -0.107 4.107 13 C 0.124 3.876 14 H 0.008 0.992 15 C -0.562 4.562 16 H 0.050 0.950 17 C 0.037 3.963 18 N -0.832 5.832 19 Si 0.935 3.065 20 H -0.290 1.290 21 H -0.285 1.285 22 H -0.267 1.267 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.022 0.978 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.831 -3.442 0.634 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.181 4.181 3 C -0.184 4.184 4 C -0.019 4.019 5 C -0.183 4.183 6 C -0.184 4.184 7 N -0.162 5.162 8 C -0.046 4.046 9 N -0.160 5.160 10 C -0.017 4.017 11 C -0.161 4.161 12 C -0.146 4.146 13 C 0.104 3.896 14 H 0.026 0.974 15 C -0.600 4.600 16 H 0.068 0.932 17 C -0.170 4.170 18 N -0.465 5.465 19 Si 0.762 3.238 20 H -0.217 1.217 21 H -0.210 1.210 22 H -0.191 1.191 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.166 -2.897 0.760 12.529 hybrid contribution 0.582 0.108 -0.652 0.881 sum -11.583 -2.789 0.108 11.915 Atomic orbital electron populations 1.20125 0.85021 1.03592 1.02625 1.21271 0.95382 0.86900 1.14550 1.21317 0.90272 0.96030 1.10774 1.19358 0.99488 0.87825 0.95234 1.21609 1.00044 0.99884 0.96724 1.21623 0.99709 1.00089 0.96960 1.70566 1.19181 1.09326 1.17120 1.24672 0.85550 0.91343 1.03078 1.45854 1.06733 1.07164 1.56263 1.22036 0.99002 0.77517 1.03175 1.21875 0.93531 1.00863 0.99848 1.21624 0.97665 0.96273 0.98993 1.17328 0.87353 0.89086 0.95882 0.97438 1.20975 1.25003 1.02244 1.11767 0.93177 1.25537 0.97651 0.97081 0.96728 1.70254 1.38778 1.08652 1.28768 0.85939 0.79718 0.78300 0.79799 1.21725 1.21033 1.19108 0.90958 0.90887 0.89557 0.88592 0.95479 0.90691 0.93748 0.94004 0.90498 0.95912 0.89759 0.87841 0.86528 0.92281 0.90954 0.93158 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.43 9.85 71.24 0.70 -0.73 16 2 C -0.07 -2.59 6.98 41.09 0.29 -2.30 16 3 C -0.05 -2.42 5.61 41.40 0.23 -2.19 16 4 C 0.00 0.01 3.28 -11.54 -0.04 -0.03 16 5 C -0.12 -4.48 9.18 71.98 0.66 -3.82 16 6 C -0.13 -4.63 9.18 71.98 0.66 -3.97 16 7 N -0.45 -24.49 8.29 -175.69 -1.46 -25.95 16 8 C 0.22 11.22 6.84 138.23 0.95 12.16 16 9 N -0.47 -19.58 3.13 -499.38 -1.57 -21.14 16 10 C 0.10 3.07 6.71 86.47 0.58 3.65 16 11 C -0.12 -3.64 5.94 30.73 0.18 -3.46 16 12 C -0.11 -4.20 5.23 30.78 0.16 -4.04 16 13 C 0.12 6.45 2.48 -12.05 -0.03 6.42 16 14 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 15 C -0.56 -32.43 8.53 25.60 0.22 -32.21 16 16 H 0.05 2.84 7.75 -2.91 -0.02 2.82 16 17 C 0.04 2.18 5.11 84.65 0.43 2.61 16 18 N -0.83 -51.11 10.64 21.45 0.23 -50.88 16 19 Si 0.94 46.68 29.54 68.60 2.03 48.71 16 20 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 21 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.07 1.56 7.71 -2.39 -0.02 1.54 16 25 H 0.09 1.94 7.18 -2.39 -0.02 1.92 16 26 H 0.10 2.80 6.82 -2.39 -0.02 2.78 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 2.38 7.80 -2.39 -0.02 2.36 16 35 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.06 1.84 8.12 -2.39 -0.02 1.83 16 37 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 39 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -73.44 309.16 5.23 -68.21 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.00 Total: 8.96 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 4.99 Total: -27.91 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -2.79 Total: -97.97 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -73.44 5.23 -68.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.759 kcal (2) G-P(sol) polarization free energy of solvation -73.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds