Wall clock time and date at job start Mon Mar 30 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30525 * 123.54568 * 2 1 4 4 C 1.44460 * 107.93881 * 180.14762 * 3 2 1 5 5 H 1.09000 * 108.22182 * 267.89335 * 4 3 2 6 6 C 1.50713 * 121.30444 * 140.89204 * 4 3 2 7 7 C 1.54022 * 106.84696 * 179.20690 * 6 4 3 8 8 C 1.52490 * 111.98432 * 56.01035 * 7 6 4 9 9 H 1.08997 * 109.00136 * 186.14462 * 8 7 6 10 10 C 1.50707 * 109.00167 * 67.29511 * 8 7 6 11 11 H 1.08004 * 119.99594 * 334.92792 * 10 8 7 12 12 C 1.37875 * 120.00041 * 154.93129 * 10 8 7 13 13 N 1.31515 * 119.99712 * 186.20030 * 12 10 8 14 14 Si 1.86791 * 120.00075 * 6.19830 * 12 10 8 15 15 H 1.48509 * 109.47433 * 84.80524 * 14 12 10 16 16 H 1.48500 * 109.47146 * 204.80588 * 14 12 10 17 17 H 1.48498 * 109.47300 * 324.80645 * 14 12 10 18 18 C 1.54150 * 111.86048 * 306.68182 * 8 7 6 19 19 C 1.51437 * 106.27158 * 57.93188 * 18 8 7 20 20 H 1.09006 * 110.26316 * 53.28626 * 19 18 8 21 21 N 1.38710 * 123.54289 * 180.02562 * 2 1 3 22 22 C 1.46506 * 127.93889 * 335.54757 * 21 2 1 23 23 C 1.53000 * 117.49903 * 14.27543 * 22 21 2 24 24 C 1.52999 * 117.49798 * 305.65193 * 22 21 2 25 25 H 1.08995 * 109.46829 * 5.62329 * 1 2 3 26 26 H 1.08997 * 109.47151 * 125.62459 * 1 2 3 27 27 H 1.09003 * 109.46953 * 245.62926 * 1 2 3 28 28 H 1.08999 * 109.98137 * 298.54112 * 6 4 3 29 29 H 1.09002 * 109.97954 * 59.78693 * 6 4 3 30 30 H 1.08998 * 108.98196 * 176.66144 * 7 6 4 31 31 H 1.09003 * 108.97357 * 295.45982 * 7 6 4 32 32 H 0.97000 * 120.00168 * 180.02562 * 13 12 10 33 33 H 1.09001 * 110.08644 * 298.74548 * 18 8 7 34 34 H 1.09002 * 110.09000 * 177.12052 * 18 8 7 35 35 H 1.09000 * 115.54837 * 159.98175 * 22 21 2 36 36 H 1.08994 * 117.50031 * 359.97438 * 23 22 21 37 37 H 1.08996 * 117.49775 * 145.01914 * 23 22 21 38 38 H 1.09005 * 117.49996 * 214.97889 * 24 22 21 39 39 H 1.08996 * 117.49956 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2283 1.0879 0.0000 4 6 3.6196 0.6992 -0.0035 5 1 3.9603 0.6427 1.0303 6 6 4.6409 1.4521 -0.8169 7 6 6.0010 0.7756 -0.5625 8 6 5.9675 -0.7139 -0.8878 9 1 6.9142 -1.1638 -0.5890 10 6 5.7897 -0.8876 -2.3742 11 1 5.3177 -0.1097 -2.9561 12 6 6.2294 -2.0395 -2.9912 13 7 6.1861 -2.1411 -4.3017 14 14 6.8868 -3.4556 -1.9658 15 1 5.7554 -4.2997 -1.5042 16 1 7.8120 -4.2751 -2.7890 17 1 7.6156 -2.9181 -0.7889 18 6 4.8178 -1.4353 -0.1570 19 6 3.5416 -0.7415 -0.5849 20 1 3.4754 -0.7098 -1.6725 21 7 2.2735 -1.1561 -0.0005 22 6 1.8945 -2.4883 0.4772 23 6 0.4097 -2.7494 0.7378 24 6 1.3786 -2.6036 1.9129 25 1 -0.3633 1.0227 -0.1007 26 1 -0.3633 -0.5986 -0.8353 27 1 -0.3633 -0.4241 0.9361 28 1 4.3891 1.3952 -1.8759 29 1 4.6763 2.4939 -0.4983 30 1 6.7578 1.2568 -1.1819 31 1 6.2690 0.9020 0.4865 32 1 6.4951 -2.9516 -4.7358 33 1 4.9473 -1.3487 0.9218 34 1 4.7891 -2.4851 -0.4488 35 1 2.4905 -3.3141 0.0887 36 1 -0.2852 -1.9300 0.5542 37 1 0.0285 -3.7471 0.5206 38 1 1.6347 -3.5055 2.4689 39 1 1.3206 -1.6883 2.5019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:33 Heat of formation + Delta-G solvation = 73.278044 kcal Electronic energy + Delta-G solvation = -19169.516884 eV Core-core repulsion = 16499.703112 eV Total energy + Delta-G solvation = -2669.813773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56674 -37.30967 -35.64783 -32.36951 -31.59201 -30.55001 -28.78295 -27.23483 -24.44278 -22.72581 -22.32924 -21.11234 -20.87423 -18.95158 -18.22086 -16.81595 -15.97402 -15.55613 -14.83737 -14.49247 -13.98847 -13.69420 -13.40997 -13.22208 -12.79720 -12.63768 -12.35938 -12.15711 -11.87442 -11.61598 -11.28895 -11.14284 -10.92363 -10.75703 -10.68547 -10.51266 -10.27014 -9.93265 -9.76174 -9.59876 -9.34823 -8.90149 -8.72405 -8.51897 -7.25129 -6.09327 -4.07484 2.63167 3.23422 3.33090 3.33738 3.36458 3.95159 4.38589 4.63346 4.78817 4.92301 5.03807 5.13508 5.23164 5.41457 5.47908 5.59214 5.63610 5.75365 5.81620 5.88723 6.02605 6.09075 6.09645 6.14699 6.18088 6.24443 6.35204 6.49838 6.58159 6.79059 6.91536 6.95237 7.05397 7.13306 7.26972 7.43586 7.77371 8.05627 8.30475 8.50888 8.96211 9.53594 11.03542 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.008851 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.315730 B = 3162.639992 C = 3793.427832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.354 3.646 3 N -0.554 5.554 4 C 0.048 3.952 5 H 0.059 0.941 6 C -0.085 4.085 7 C -0.094 4.094 8 C 0.005 3.995 9 H 0.040 0.960 10 C -0.507 4.507 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.872 3.128 15 H -0.278 1.278 16 H -0.292 1.292 17 H -0.263 1.263 18 C -0.104 4.104 19 C 0.118 3.882 20 H 0.097 0.903 21 N -0.625 5.625 22 C 0.126 3.874 23 C -0.214 4.214 24 C -0.203 4.203 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 -0.439 10.534 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.078 3.922 3 N -0.279 5.279 4 C -0.063 4.063 5 H 0.077 0.923 6 C -0.123 4.123 7 C -0.133 4.133 8 C -0.014 4.014 9 H 0.059 0.941 10 C -0.545 4.545 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.701 3.299 15 H -0.204 1.204 16 H -0.218 1.218 17 H -0.188 1.188 18 C -0.143 4.143 19 C 0.014 3.986 20 H 0.115 0.885 21 N -0.347 5.347 22 C 0.020 3.980 23 C -0.252 4.252 24 C -0.242 4.242 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.579 0.356 10.384 14.133 hybrid contribution 0.664 -1.906 0.478 2.074 sum -8.915 -1.550 10.863 14.138 Atomic orbital electron populations 1.20808 0.87801 1.04222 1.02767 1.24054 0.94365 0.83203 0.90566 1.74330 1.03338 1.24123 1.26067 1.22040 0.90610 0.94608 0.99041 0.92274 1.21019 0.93678 0.97448 1.00196 1.21471 0.95910 0.97329 0.98562 1.19367 0.93610 0.91771 0.96688 0.94150 1.21033 1.39221 1.03960 0.90287 0.90600 1.25036 0.95120 0.98276 0.94592 1.69914 1.47755 1.27811 1.08246 0.86994 0.79204 0.82960 0.80776 1.20379 1.21817 1.18821 1.21816 0.95212 0.99545 0.97711 1.22306 0.83342 0.94115 0.98816 0.88516 1.47457 1.14880 1.06168 1.66173 1.21083 0.95712 0.85386 0.95833 1.23900 0.93900 1.04026 1.03354 1.23453 1.05122 1.03184 0.92465 0.89617 0.89885 0.89986 0.90955 0.92801 0.91888 0.94696 0.92740 0.94262 0.92905 0.85770 0.86828 0.88401 0.88552 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 8.42 36.01 0.30 -0.84 16 2 C 0.35 5.93 7.37 -151.94 -1.12 4.81 16 3 N -0.55 -10.60 11.73 -51.85 -0.61 -11.21 16 4 C 0.05 0.95 3.09 -68.81 -0.21 0.74 16 5 H 0.06 1.19 7.69 -51.93 -0.40 0.80 16 6 C -0.09 -1.69 5.81 -27.34 -0.16 -1.84 16 7 C -0.09 -1.90 5.20 -26.46 -0.14 -2.04 16 8 C 0.01 0.12 2.11 -91.43 -0.19 -0.08 16 9 H 0.04 0.94 5.81 -51.93 -0.30 0.64 16 10 C -0.51 -13.55 7.09 -34.44 -0.24 -13.79 16 11 H 0.08 2.22 6.97 -52.48 -0.37 1.85 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 14 Si 0.87 21.06 25.61 -169.99 -4.35 16.70 16 15 H -0.28 -6.54 7.08 56.52 0.40 -6.14 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.26 -6.09 6.15 56.52 0.35 -5.74 16 18 C -0.10 -2.18 4.95 -26.92 -0.13 -2.31 16 19 C 0.12 2.40 2.95 -67.82 -0.20 2.20 16 20 H 0.10 2.32 6.66 -51.93 -0.35 1.98 16 21 N -0.63 -10.91 3.36 -155.16 -0.52 -11.43 16 22 C 0.13 1.84 6.79 -67.93 -0.46 1.37 16 23 C -0.21 -2.37 9.75 -26.73 -0.26 -2.63 16 24 C -0.20 -2.42 10.38 -26.73 -0.28 -2.69 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.89 7.74 -51.93 -0.40 0.48 16 27 H 0.08 0.80 6.37 -51.93 -0.33 0.47 16 28 H 0.07 1.57 6.89 -51.93 -0.36 1.21 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.04 0.76 7.85 -51.93 -0.41 0.36 16 34 H 0.05 1.15 6.04 -51.93 -0.31 0.84 16 35 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16 36 H 0.11 1.15 3.64 -51.93 -0.19 0.96 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -29.90 293.46 -9.46 -39.36 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.98 Total: 3.50 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -3.19 Total: -15.21 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.36 Total: -48.79 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.35 Total: 16.70 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.90 -9.46 -39.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.641 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds