Wall clock time and date at job start Mon Mar 30 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30525 * 123.54568 * 2 1 4 4 C 1.44460 * 107.93881 * 180.14762 * 3 2 1 5 5 H 1.09000 * 108.22182 * 267.89335 * 4 3 2 6 6 C 1.50713 * 121.30444 * 140.89204 * 4 3 2 7 7 C 1.54022 * 106.84696 * 179.20690 * 6 4 3 8 8 C 1.52490 * 111.98432 * 56.01035 * 7 6 4 9 9 H 1.08997 * 109.00136 * 186.14462 * 8 7 6 10 10 C 1.50707 * 109.00167 * 67.29511 * 8 7 6 11 11 H 1.08004 * 119.99594 * 334.92792 * 10 8 7 12 12 C 1.37875 * 120.00041 * 154.93129 * 10 8 7 13 13 N 1.31515 * 119.99712 * 186.20030 * 12 10 8 14 14 Si 1.86791 * 120.00075 * 6.19830 * 12 10 8 15 15 H 1.48509 * 109.47433 * 84.80524 * 14 12 10 16 16 H 1.48500 * 109.47146 * 204.80588 * 14 12 10 17 17 H 1.48498 * 109.47300 * 324.80645 * 14 12 10 18 18 C 1.54150 * 111.86048 * 306.68182 * 8 7 6 19 19 C 1.51437 * 106.27158 * 57.93188 * 18 8 7 20 20 H 1.09006 * 110.26316 * 53.28626 * 19 18 8 21 21 N 1.38710 * 123.54289 * 180.02562 * 2 1 3 22 22 C 1.46506 * 127.93889 * 335.54757 * 21 2 1 23 23 C 1.53000 * 117.49903 * 14.27543 * 22 21 2 24 24 C 1.52999 * 117.49798 * 305.65193 * 22 21 2 25 25 H 1.08995 * 109.46829 * 5.62329 * 1 2 3 26 26 H 1.08997 * 109.47151 * 125.62459 * 1 2 3 27 27 H 1.09003 * 109.46953 * 245.62926 * 1 2 3 28 28 H 1.08999 * 109.98137 * 298.54112 * 6 4 3 29 29 H 1.09002 * 109.97954 * 59.78693 * 6 4 3 30 30 H 1.08998 * 108.98196 * 176.66144 * 7 6 4 31 31 H 1.09003 * 108.97357 * 295.45982 * 7 6 4 32 32 H 0.97000 * 120.00168 * 180.02562 * 13 12 10 33 33 H 1.09001 * 110.08644 * 298.74548 * 18 8 7 34 34 H 1.09002 * 110.09000 * 177.12052 * 18 8 7 35 35 H 1.09000 * 115.54837 * 159.98175 * 22 21 2 36 36 H 1.08994 * 117.50031 * 359.97438 * 23 22 21 37 37 H 1.08996 * 117.49775 * 145.01914 * 23 22 21 38 38 H 1.09005 * 117.49996 * 214.97889 * 24 22 21 39 39 H 1.08996 * 117.49956 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2283 1.0879 0.0000 4 6 3.6196 0.6992 -0.0035 5 1 3.9603 0.6427 1.0303 6 6 4.6409 1.4521 -0.8169 7 6 6.0010 0.7756 -0.5625 8 6 5.9675 -0.7139 -0.8878 9 1 6.9142 -1.1638 -0.5890 10 6 5.7897 -0.8876 -2.3742 11 1 5.3177 -0.1097 -2.9561 12 6 6.2294 -2.0395 -2.9912 13 7 6.1861 -2.1411 -4.3017 14 14 6.8868 -3.4556 -1.9658 15 1 5.7554 -4.2997 -1.5042 16 1 7.8120 -4.2751 -2.7890 17 1 7.6156 -2.9181 -0.7889 18 6 4.8178 -1.4353 -0.1570 19 6 3.5416 -0.7415 -0.5849 20 1 3.4754 -0.7098 -1.6725 21 7 2.2735 -1.1561 -0.0005 22 6 1.8945 -2.4883 0.4772 23 6 0.4097 -2.7494 0.7378 24 6 1.3786 -2.6036 1.9129 25 1 -0.3633 1.0227 -0.1007 26 1 -0.3633 -0.5986 -0.8353 27 1 -0.3633 -0.4241 0.9361 28 1 4.3891 1.3952 -1.8759 29 1 4.6763 2.4939 -0.4983 30 1 6.7578 1.2568 -1.1819 31 1 6.2690 0.9020 0.4865 32 1 6.4951 -2.9516 -4.7358 33 1 4.9473 -1.3487 0.9218 34 1 4.7891 -2.4851 -0.4488 35 1 2.4905 -3.3141 0.0887 36 1 -0.2852 -1.9300 0.5542 37 1 0.0285 -3.7471 0.5206 38 1 1.6347 -3.5055 2.4689 39 1 1.3206 -1.6883 2.5019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:33 Heat of formation + Delta-G solvation = 54.090397 kcal Electronic energy + Delta-G solvation = -19170.348923 eV Core-core repulsion = 16499.703112 eV Total energy + Delta-G solvation = -2670.645811 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.01635 -38.61647 -37.06625 -34.38508 -33.02809 -31.97209 -30.31167 -28.74321 -26.39084 -24.02007 -23.26194 -22.59930 -22.39115 -20.79516 -19.53188 -18.64324 -17.39273 -16.96796 -16.45367 -16.08401 -15.46165 -14.93530 -14.88008 -14.64471 -14.51431 -14.04600 -13.90136 -13.62780 -13.21775 -13.00362 -12.93452 -12.68922 -12.47893 -12.38071 -12.01193 -11.81139 -11.70340 -11.53906 -11.36825 -11.20683 -10.87319 -10.77323 -10.70142 -10.23621 -8.63284 -8.26408 -6.28104 1.31029 1.33444 1.33864 1.43303 2.06775 2.34100 2.96881 3.07192 3.29301 3.65230 3.78883 3.93172 4.00600 4.14055 4.22302 4.44220 4.44902 4.47370 4.51917 4.57697 4.64203 4.66572 4.75315 4.77949 4.88584 4.91041 4.96208 5.13196 5.18299 5.23664 5.25641 5.27475 5.40281 5.50349 5.59292 5.75129 5.82828 6.35019 6.76967 6.78556 6.94052 7.35528 8.90138 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.008851 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.315730 B = 3162.639992 C = 3793.427832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.356 3.644 3 N -0.589 5.589 4 C 0.056 3.944 5 H 0.060 0.940 6 C -0.080 4.080 7 C -0.092 4.092 8 C 0.003 3.997 9 H 0.041 0.959 10 C -0.498 4.498 11 H 0.032 0.968 12 C 0.011 3.989 13 N -0.952 5.952 14 Si 0.933 3.067 15 H -0.267 1.267 16 H -0.294 1.294 17 H -0.241 1.241 18 C -0.094 4.094 19 C 0.121 3.879 20 H 0.047 0.953 21 N -0.626 5.626 22 C 0.081 3.919 23 C -0.188 4.188 24 C -0.185 4.185 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 -1.432 13.611 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 N -0.316 5.316 4 C -0.056 4.056 5 H 0.078 0.922 6 C -0.119 4.119 7 C -0.130 4.130 8 C -0.016 4.016 9 H 0.060 0.940 10 C -0.536 4.536 11 H 0.051 0.949 12 C -0.185 4.185 13 N -0.592 5.592 14 Si 0.759 3.241 15 H -0.192 1.192 16 H -0.221 1.221 17 H -0.165 1.165 18 C -0.133 4.133 19 C 0.016 3.984 20 H 0.065 0.935 21 N -0.348 5.348 22 C -0.023 4.023 23 C -0.225 4.225 24 C -0.224 4.224 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.130 0.870 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.004 -0.651 13.498 17.427 hybrid contribution 1.016 -1.557 -0.541 1.936 sum -9.988 -2.208 12.957 16.508 Atomic orbital electron populations 1.21001 0.84022 1.05502 1.04765 1.24900 0.96413 0.82326 0.88220 1.74330 1.02769 1.25323 1.29136 1.21911 0.91461 0.93708 0.98500 0.92175 1.20933 0.93940 0.98671 0.98323 1.21414 0.95925 0.95429 1.00233 1.19382 0.94365 0.93927 0.93930 0.94047 1.21206 1.37420 1.02511 0.92433 0.94935 1.25869 0.95913 1.01189 0.95563 1.70074 1.50071 1.28742 1.10344 0.85992 0.78943 0.79520 0.79692 1.19222 1.22073 1.16458 1.21630 0.94543 0.98469 0.98608 1.21892 0.84890 0.95347 0.96269 0.93489 1.47514 1.13714 1.07608 1.65926 1.21338 0.98729 0.83638 0.98625 1.24034 0.91722 1.05589 1.01193 1.23466 1.03975 1.03798 0.91208 0.88743 0.88482 0.87130 0.94287 0.91033 0.92512 0.91635 0.92843 0.91951 0.93974 0.86959 0.85575 0.86391 0.86839 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 8.42 71.24 0.60 -1.34 16 2 C 0.36 11.41 7.37 136.91 1.01 12.42 16 3 N -0.59 -22.21 11.73 -317.97 -3.73 -25.94 16 4 C 0.06 2.19 3.09 45.51 0.14 2.33 16 5 H 0.06 2.33 7.69 -2.39 -0.02 2.32 16 6 C -0.08 -3.24 5.81 30.20 0.18 -3.06 16 7 C -0.09 -3.66 5.20 30.77 0.16 -3.50 16 8 C 0.00 0.15 2.11 -11.32 -0.02 0.13 16 9 H 0.04 1.87 5.81 -2.39 -0.01 1.86 16 10 C -0.50 -27.74 7.09 25.60 0.18 -27.56 16 11 H 0.03 2.05 6.97 -2.91 -0.02 2.03 16 12 C 0.01 0.64 5.47 84.65 0.46 1.10 16 13 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 14 Si 0.93 43.64 25.61 68.60 1.76 45.40 16 15 H -0.27 -11.92 7.08 99.48 0.70 -11.22 16 16 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 17 H -0.24 -10.32 6.15 99.48 0.61 -9.71 16 18 C -0.09 -3.86 4.95 30.47 0.15 -3.71 16 19 C 0.12 5.01 2.95 45.52 0.13 5.15 16 20 H 0.05 2.41 6.66 -2.38 -0.02 2.39 16 21 N -0.63 -21.22 3.36 -644.81 -2.16 -23.38 16 22 C 0.08 2.19 6.79 44.99 0.31 2.50 16 23 C -0.19 -3.41 9.75 30.60 0.30 -3.11 16 24 C -0.19 -3.72 10.38 30.59 0.32 -3.40 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.10 1.75 7.74 -2.39 -0.02 1.73 16 27 H 0.11 1.66 6.37 -2.39 -0.02 1.65 16 28 H 0.04 1.80 6.89 -2.39 -0.02 1.78 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 33 H 0.06 2.29 7.85 -2.39 -0.02 2.27 16 34 H 0.04 1.80 6.04 -2.39 -0.01 1.79 16 35 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.13 1.97 3.64 -2.39 -0.01 1.96 16 37 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -68.22 293.46 1.01 -67.21 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.94 Total: 18.00 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 3.91 Total: -22.06 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -5.60 Total: -108.54 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.76 Total: 45.40 kcal Total: -68.22 1.01 -67.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.303 kcal (2) G-P(sol) polarization free energy of solvation -68.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds