Wall clock time and date at job start Mon Mar 30 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.28743 * 122.77890 * 2 1 4 4 C 1.46249 * 109.04552 * 179.07940 * 3 2 1 5 5 H 1.08999 * 104.57845 * 255.13759 * 4 3 2 6 6 C 1.49459 * 114.25217 * 139.60482 * 4 3 2 7 7 C 1.52527 * 113.26081 * 266.24232 * 6 4 3 8 8 C 1.53431 * 107.66536 * 305.16203 * 7 6 4 9 9 H 1.08997 * 109.74396 * 308.61449 * 8 7 6 10 10 C 1.50700 * 109.74189 * 187.94594 * 8 7 6 11 11 H 1.07996 * 119.99972 * 239.99834 * 10 8 7 12 12 C 1.37874 * 119.99635 * 60.00450 * 10 8 7 13 13 N 1.31513 * 120.00307 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 120.00022 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47254 * 59.99527 * 14 12 10 16 16 H 1.48493 * 109.47113 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46778 * 299.99850 * 14 12 10 18 18 C 1.52247 * 108.06553 * 68.30660 * 8 7 6 19 19 C 1.51214 * 105.52256 * 6.42369 * 4 3 2 20 20 H 1.09000 * 109.94212 * 233.77388 * 19 4 3 21 21 N 1.36439 * 122.78014 * 180.02562 * 2 1 3 22 22 C 1.46500 * 126.05572 * 354.87667 * 21 2 1 23 23 C 1.52994 * 117.49866 * 183.34963 * 22 21 2 24 24 C 1.53000 * 60.00343 * 252.51633 * 23 22 21 25 25 H 1.09007 * 109.47360 * 274.55332 * 1 2 3 26 26 H 1.09001 * 109.47451 * 34.55061 * 1 2 3 27 27 H 1.08995 * 109.47348 * 154.55737 * 1 2 3 28 28 H 1.08997 * 108.72252 * 27.21639 * 6 4 3 29 29 H 1.09002 * 108.72773 * 145.39100 * 6 4 3 30 30 H 1.09007 * 109.81924 * 64.70415 * 7 6 4 31 31 H 1.08999 * 109.82090 * 185.61775 * 7 6 4 32 32 H 0.96998 * 120.00415 * 180.02562 * 13 12 10 33 33 H 1.08996 * 108.81567 * 62.17146 * 18 8 7 34 34 H 1.08997 * 108.80950 * 180.56120 * 18 8 7 35 35 H 1.08997 * 115.54898 * 329.06379 * 22 21 2 36 36 H 1.08997 * 117.50272 * 0.02562 * 23 22 21 37 37 H 1.09001 * 117.50112 * 145.02516 * 23 22 21 38 38 H 1.09001 * 117.49776 * 252.51903 * 24 23 22 39 39 H 1.08995 * 117.52124 * 107.48164 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2040 1.0824 0.0000 4 6 3.6245 0.7353 0.0222 5 1 3.9414 0.9419 1.0444 6 6 4.4791 1.5901 -0.8569 7 6 4.6970 0.9975 -2.2454 8 6 5.2657 -0.4160 -2.0643 9 1 6.1258 -0.3840 -1.3956 10 6 5.6811 -0.9727 -3.4017 11 1 5.2268 -1.8789 -3.7741 12 6 6.6412 -0.3250 -4.1498 13 7 7.1942 0.7788 -3.6965 14 14 7.1568 -1.0154 -5.8072 15 1 5.9778 -1.0721 -6.7083 16 1 8.1965 -0.1405 -6.4061 17 1 7.7063 -2.3829 -5.6246 18 6 4.1753 -1.2898 -1.4599 19 6 3.6760 -0.7686 -0.1270 20 1 4.2603 -1.2029 0.6842 21 7 2.2457 -1.1471 -0.0005 22 6 1.7207 -2.5108 0.1046 23 6 2.7342 -3.6554 0.1629 24 6 1.9034 -3.4330 -1.1025 25 1 -0.3634 0.0816 1.0245 26 1 -0.3634 0.8464 -0.5828 27 1 -0.3634 -0.9279 -0.4415 28 1 4.0055 2.5660 -0.9633 29 1 5.4497 1.7231 -0.3790 30 1 3.7479 0.9485 -2.7794 31 1 5.4041 1.6118 -2.8026 32 1 7.8694 1.2346 -4.2229 33 1 3.3371 -1.3373 -2.1551 34 1 4.5700 -2.2956 -1.3166 35 1 0.8053 -2.6186 0.6864 36 1 3.7916 -3.3938 0.1234 37 1 2.4859 -4.5165 0.7832 38 1 1.1083 -4.1478 -1.3145 39 1 2.4138 -3.0251 -1.9749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:36 Heat of formation + Delta-G solvation = 56.521137 kcal Electronic energy + Delta-G solvation = -19046.052597 eV Core-core repulsion = 16375.512190 eV Total energy + Delta-G solvation = -2670.540407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55566 -36.84597 -35.69714 -32.57136 -31.49750 -30.33330 -28.95555 -27.09549 -24.61594 -22.59172 -22.26232 -21.32223 -20.73428 -18.85736 -18.06690 -16.39452 -16.15432 -15.47007 -14.63880 -14.56764 -14.16994 -13.51735 -13.41855 -12.95855 -12.78984 -12.40980 -12.07558 -11.86936 -11.76543 -11.49397 -11.34235 -11.07590 -10.93174 -10.67376 -10.52611 -10.42822 -10.34226 -9.80037 -9.68495 -9.53320 -9.38197 -8.98530 -8.56545 -8.28393 -7.26712 -5.95336 -4.02430 2.86751 3.27384 3.32616 3.37552 3.39957 3.94685 4.44963 4.65629 4.87593 4.94885 5.03357 5.12693 5.33150 5.42639 5.49830 5.61922 5.71313 5.75245 5.87373 5.91627 6.00175 6.07688 6.20024 6.27441 6.33460 6.43873 6.57632 6.76159 6.77753 6.92128 7.05167 7.17014 7.32191 7.53382 7.78037 7.96951 8.03492 8.17734 8.44440 8.49185 9.00435 9.61789 11.09765 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.007436 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.902033 B = 3764.655510 C = 4443.583768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.355 3.645 3 N -0.564 5.564 4 C 0.072 3.928 5 H 0.048 0.952 6 C -0.094 4.094 7 C -0.106 4.106 8 C 0.054 3.946 9 H 0.026 0.974 10 C -0.512 4.512 11 H 0.052 0.948 12 C 0.063 3.937 13 N -0.888 5.888 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.278 1.278 18 C -0.110 4.110 19 C 0.129 3.871 20 H 0.068 0.932 21 N -0.616 5.616 22 C 0.103 3.897 23 C -0.184 4.184 24 C -0.201 4.201 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.029 0.971 31 H 0.095 0.905 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 -5.410 8.078 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 N -0.292 5.292 4 C -0.039 4.039 5 H 0.066 0.934 6 C -0.132 4.132 7 C -0.144 4.144 8 C 0.035 3.965 9 H 0.044 0.956 10 C -0.550 4.550 11 H 0.070 0.930 12 C -0.138 4.138 13 N -0.527 5.527 14 Si 0.717 3.283 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.149 4.149 19 C 0.026 3.974 20 H 0.086 0.914 21 N -0.337 5.337 22 C -0.003 4.003 23 C -0.222 4.222 24 C -0.240 4.240 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.947 -4.360 8.074 14.285 hybrid contribution 0.706 -1.294 -0.860 1.707 sum -10.241 -5.654 7.214 13.744 Atomic orbital electron populations 1.20508 0.87566 1.03677 1.03208 1.23028 0.94837 0.83524 0.90763 1.74500 1.02729 1.23578 1.28398 1.20919 0.91299 0.91923 0.99720 0.93424 1.20624 0.96961 0.97861 0.97782 1.21577 0.99599 1.00022 0.93216 1.18545 0.91650 0.91105 0.95229 0.95636 1.21106 1.21254 1.09447 1.03226 0.93020 1.24939 0.96147 0.94952 0.97810 1.69867 1.27443 1.17379 1.38012 0.86713 0.78267 0.78912 0.84419 1.20373 1.21273 1.20371 1.21679 1.00190 0.99468 0.93536 1.21675 0.80783 0.95641 0.99303 0.91361 1.48125 1.05974 1.02844 1.76807 1.21192 0.98509 0.78959 1.01601 1.23277 0.98466 0.99012 1.01438 1.23630 1.03212 1.03186 0.94007 0.90348 0.89610 0.90888 0.92592 0.92564 0.95192 0.88682 0.92975 0.92685 0.93524 0.86152 0.87961 0.88378 0.88719 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 10.04 36.00 0.36 -0.69 16 2 C 0.36 5.83 7.66 -155.56 -1.19 4.64 16 3 N -0.56 -10.87 11.40 -54.52 -0.62 -11.49 16 4 C 0.07 1.42 3.23 -70.71 -0.23 1.20 16 5 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 6 C -0.09 -2.02 5.55 -28.72 -0.16 -2.18 16 7 C -0.11 -2.61 5.20 -26.75 -0.14 -2.75 16 8 C 0.05 1.34 2.11 -91.93 -0.19 1.15 16 9 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 10 C -0.51 -14.11 8.58 -34.44 -0.30 -14.40 16 11 H 0.05 1.41 7.75 -52.49 -0.41 1.00 16 12 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 13 N -0.89 -25.44 11.32 55.43 0.63 -24.82 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.11 -2.32 3.01 -27.84 -0.08 -2.40 16 19 C 0.13 2.41 2.94 -68.45 -0.20 2.21 16 20 H 0.07 1.23 7.98 -51.93 -0.41 0.81 16 21 N -0.62 -9.88 2.90 -156.63 -0.45 -10.34 16 22 C 0.10 1.31 6.06 -67.93 -0.41 0.89 16 23 C -0.18 -2.24 9.70 -26.73 -0.26 -2.50 16 24 C -0.20 -2.54 9.95 -26.73 -0.27 -2.81 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 28 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.75 8.11 -51.92 -0.42 0.33 16 31 H 0.09 2.60 5.98 -51.93 -0.31 2.29 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.05 1.22 6.62 -51.93 -0.34 0.87 16 34 H 0.05 0.95 6.68 -51.93 -0.35 0.60 16 35 H 0.12 1.20 7.95 -51.93 -0.41 0.79 16 36 H 0.10 1.44 5.92 -51.93 -0.31 1.14 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.11 1.67 6.04 -51.93 -0.31 1.35 16 LS Contribution 299.56 15.07 4.51 4.51 Total: -1.00 -29.80 299.56 -10.29 -40.09 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.17 Total: 1.65 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -3.16 Total: -15.99 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.45 Total: -46.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.80 -10.29 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.609 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds