Wall clock time and date at job start Mon Mar 30 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.28743 * 122.77890 * 2 1 4 4 C 1.46249 * 109.04552 * 179.07940 * 3 2 1 5 5 H 1.08999 * 104.57845 * 255.13759 * 4 3 2 6 6 C 1.49459 * 114.25217 * 139.60482 * 4 3 2 7 7 C 1.52527 * 113.26081 * 266.24232 * 6 4 3 8 8 C 1.53431 * 107.66536 * 305.16203 * 7 6 4 9 9 H 1.08997 * 109.74396 * 308.61449 * 8 7 6 10 10 C 1.50700 * 109.74189 * 187.94594 * 8 7 6 11 11 H 1.07996 * 119.99972 * 239.99834 * 10 8 7 12 12 C 1.37874 * 119.99635 * 60.00450 * 10 8 7 13 13 N 1.31513 * 120.00307 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 120.00022 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47254 * 59.99527 * 14 12 10 16 16 H 1.48493 * 109.47113 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46778 * 299.99850 * 14 12 10 18 18 C 1.52247 * 108.06553 * 68.30660 * 8 7 6 19 19 C 1.51214 * 105.52256 * 6.42369 * 4 3 2 20 20 H 1.09000 * 109.94212 * 233.77388 * 19 4 3 21 21 N 1.36439 * 122.78014 * 180.02562 * 2 1 3 22 22 C 1.46500 * 126.05572 * 354.87667 * 21 2 1 23 23 C 1.52994 * 117.49866 * 183.34963 * 22 21 2 24 24 C 1.53000 * 60.00343 * 252.51633 * 23 22 21 25 25 H 1.09007 * 109.47360 * 274.55332 * 1 2 3 26 26 H 1.09001 * 109.47451 * 34.55061 * 1 2 3 27 27 H 1.08995 * 109.47348 * 154.55737 * 1 2 3 28 28 H 1.08997 * 108.72252 * 27.21639 * 6 4 3 29 29 H 1.09002 * 108.72773 * 145.39100 * 6 4 3 30 30 H 1.09007 * 109.81924 * 64.70415 * 7 6 4 31 31 H 1.08999 * 109.82090 * 185.61775 * 7 6 4 32 32 H 0.96998 * 120.00415 * 180.02562 * 13 12 10 33 33 H 1.08996 * 108.81567 * 62.17146 * 18 8 7 34 34 H 1.08997 * 108.80950 * 180.56120 * 18 8 7 35 35 H 1.08997 * 115.54898 * 329.06379 * 22 21 2 36 36 H 1.08997 * 117.50272 * 0.02562 * 23 22 21 37 37 H 1.09001 * 117.50112 * 145.02516 * 23 22 21 38 38 H 1.09001 * 117.49776 * 252.51903 * 24 23 22 39 39 H 1.08995 * 117.52124 * 107.48164 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2040 1.0824 0.0000 4 6 3.6245 0.7353 0.0222 5 1 3.9414 0.9419 1.0444 6 6 4.4791 1.5901 -0.8569 7 6 4.6970 0.9975 -2.2454 8 6 5.2657 -0.4160 -2.0643 9 1 6.1258 -0.3840 -1.3956 10 6 5.6811 -0.9727 -3.4017 11 1 5.2268 -1.8789 -3.7741 12 6 6.6412 -0.3250 -4.1498 13 7 7.1942 0.7788 -3.6965 14 14 7.1568 -1.0154 -5.8072 15 1 5.9778 -1.0721 -6.7083 16 1 8.1965 -0.1405 -6.4061 17 1 7.7063 -2.3829 -5.6246 18 6 4.1753 -1.2898 -1.4599 19 6 3.6760 -0.7686 -0.1270 20 1 4.2603 -1.2029 0.6842 21 7 2.2457 -1.1471 -0.0005 22 6 1.7207 -2.5108 0.1046 23 6 2.7342 -3.6554 0.1629 24 6 1.9034 -3.4330 -1.1025 25 1 -0.3634 0.0816 1.0245 26 1 -0.3634 0.8464 -0.5828 27 1 -0.3634 -0.9279 -0.4415 28 1 4.0055 2.5660 -0.9633 29 1 5.4497 1.7231 -0.3790 30 1 3.7479 0.9485 -2.7794 31 1 5.4041 1.6118 -2.8026 32 1 7.8694 1.2346 -4.2229 33 1 3.3371 -1.3373 -2.1551 34 1 4.5700 -2.2956 -1.3166 35 1 0.8053 -2.6186 0.6864 36 1 3.7916 -3.3938 0.1234 37 1 2.4859 -4.5165 0.7832 38 1 1.1083 -4.1478 -1.3145 39 1 2.4138 -3.0251 -1.9749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:35 Heat of formation + Delta-G solvation = 39.087589 kcal Electronic energy + Delta-G solvation = -19046.808572 eV Core-core repulsion = 16375.512190 eV Total energy + Delta-G solvation = -2671.296382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96986 -38.06050 -37.34683 -34.48897 -32.98194 -31.84514 -30.54236 -28.55318 -26.56110 -23.99358 -23.31472 -22.98169 -22.25358 -20.16286 -19.74054 -18.32914 -17.61358 -16.81557 -16.58108 -15.94816 -15.50195 -14.98150 -14.88335 -14.50131 -14.19583 -13.85042 -13.56703 -13.42162 -13.18300 -12.93047 -12.86115 -12.68518 -12.46567 -12.33096 -12.18932 -12.08308 -11.65086 -11.50641 -11.36364 -11.21856 -10.97657 -10.73571 -10.43423 -10.37031 -8.64598 -8.08721 -6.24777 1.39125 1.40464 1.48146 1.60501 2.04766 2.41383 2.94828 3.16269 3.46054 3.63040 3.86179 3.87827 4.00796 4.11064 4.26708 4.32450 4.45077 4.53841 4.57935 4.72606 4.80442 4.82863 4.86787 4.89838 4.96052 5.01355 5.07626 5.16196 5.24532 5.27908 5.34423 5.40423 5.54693 5.55288 5.64141 5.95263 6.10650 6.36158 6.77534 6.85491 7.12091 7.42991 8.94267 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.007436 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.902033 B = 3764.655510 C = 4443.583768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.358 3.642 3 N -0.603 5.603 4 C 0.069 3.931 5 H 0.050 0.950 6 C -0.085 4.085 7 C -0.093 4.093 8 C 0.051 3.949 9 H -0.001 1.001 10 C -0.535 4.535 11 H 0.049 0.951 12 C 0.014 3.986 13 N -0.914 5.914 14 Si 0.952 3.048 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.270 1.270 18 C -0.088 4.088 19 C 0.130 3.870 20 H 0.077 0.923 21 N -0.615 5.615 22 C 0.097 3.903 23 C -0.181 4.181 24 C -0.203 4.203 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.014 0.986 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.162 0.838 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.141 -7.164 8.780 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 N -0.333 5.333 4 C -0.042 4.042 5 H 0.068 0.932 6 C -0.123 4.123 7 C -0.132 4.132 8 C 0.032 3.968 9 H 0.017 0.983 10 C -0.573 4.573 11 H 0.067 0.933 12 C -0.184 4.184 13 N -0.553 5.553 14 Si 0.778 3.222 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.195 1.195 18 C -0.127 4.127 19 C 0.026 3.974 20 H 0.095 0.905 21 N -0.335 5.335 22 C -0.007 4.007 23 C -0.218 4.218 24 C -0.242 4.242 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.179 0.821 36 H 0.095 0.905 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.030 -6.150 8.782 16.874 hybrid contribution 1.346 -0.781 -1.094 1.902 sum -11.684 -6.931 7.688 15.609 Atomic orbital electron populations 1.20683 0.83718 1.04937 1.05174 1.23872 0.96946 0.82774 0.88235 1.74497 1.01927 1.25179 1.31726 1.20783 0.92246 0.92165 0.98992 0.93230 1.20483 0.97446 0.98198 0.96205 1.21327 0.97621 0.99624 0.94593 1.18483 0.92026 0.92108 0.94167 0.98283 1.21459 1.21711 1.09600 1.04521 0.93314 1.25722 0.96150 0.95214 1.01353 1.70006 1.27716 1.18322 1.39300 0.85703 0.77964 0.78514 0.80038 1.19907 1.20747 1.19475 1.21390 0.98178 0.98712 0.94420 1.21452 0.82997 0.95121 0.97876 0.90515 1.48205 1.04541 1.04495 1.76249 1.21705 0.99892 0.76982 1.02092 1.23333 0.96983 0.99923 1.01608 1.23589 1.04002 1.03846 0.92792 0.87660 0.89596 0.88569 0.92636 0.92914 0.96763 0.91739 0.92949 0.94056 0.93326 0.82111 0.90504 0.85101 0.85650 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 10.04 71.23 0.71 -0.97 16 2 C 0.36 10.99 7.66 138.18 1.06 12.05 16 3 N -0.60 -22.84 11.40 -326.41 -3.72 -26.56 16 4 C 0.07 2.75 3.23 43.32 0.14 2.89 16 5 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 6 C -0.09 -3.79 5.55 29.31 0.16 -3.63 16 7 C -0.09 -4.82 5.20 30.58 0.16 -4.66 16 8 C 0.05 2.66 2.11 -11.64 -0.02 2.64 16 9 H 0.00 -0.05 8.10 -2.39 -0.02 -0.07 16 10 C -0.53 -30.36 8.58 25.60 0.22 -30.14 16 11 H 0.05 2.72 7.75 -2.91 -0.02 2.70 16 12 C 0.01 0.82 5.29 84.65 0.45 1.27 16 13 N -0.91 -53.97 11.32 21.45 0.24 -53.72 16 14 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 C -0.09 -3.80 3.01 29.88 0.09 -3.71 16 19 C 0.13 4.84 2.94 43.55 0.13 4.96 16 20 H 0.08 2.73 7.98 -2.39 -0.02 2.71 16 21 N -0.61 -18.53 2.90 -649.47 -1.88 -20.41 16 22 C 0.10 2.12 6.06 44.99 0.27 2.40 16 23 C -0.18 -3.89 9.70 30.59 0.30 -3.60 16 24 C -0.20 -4.61 9.95 30.60 0.30 -4.31 16 25 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.10 1.43 7.48 -2.39 -0.02 1.42 16 28 H 0.05 2.43 8.08 -2.39 -0.02 2.41 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.01 0.73 8.11 -2.38 -0.02 0.71 16 31 H 0.06 3.71 5.98 -2.39 -0.01 3.69 16 32 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.04 1.87 6.62 -2.39 -0.02 1.85 16 34 H 0.05 2.03 6.68 -2.39 -0.02 2.01 16 35 H 0.16 2.28 7.95 -2.39 -0.02 2.26 16 36 H 0.08 2.08 5.92 -2.39 -0.01 2.07 16 37 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.16 6.04 -2.39 -0.01 2.14 16 Total: -1.00 -66.86 299.56 1.66 -65.20 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.02 Total: 13.86 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 3.97 Total: -24.82 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -5.36 Total: -100.69 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -66.86 1.66 -65.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.291 kcal (2) G-P(sol) polarization free energy of solvation -66.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds