Wall clock time and date at job start Mon Mar 30 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28408 * 122.78996 * 2 1 4 4 C 1.48216 * 109.81851 * 181.04837 * 3 2 1 5 5 H 1.09008 * 109.78873 * 236.62585 * 4 3 2 6 6 C 1.51665 * 107.77869 * 117.02646 * 4 3 2 7 7 C 1.52220 * 112.82962 * 210.95091 * 6 4 3 8 8 C 1.53459 * 108.06455 * 58.51786 * 7 6 4 9 9 H 1.08998 * 109.83583 * 50.89093 * 8 7 6 10 10 C 1.50697 * 109.84020 * 171.78912 * 8 7 6 11 11 H 1.08000 * 120.00337 * 120.00240 * 10 8 7 12 12 C 1.37877 * 120.00235 * 300.00356 * 10 8 7 13 13 N 1.31515 * 120.00329 * 179.97438 * 12 10 8 14 14 Si 1.86809 * 119.99787 * 0.02562 * 12 10 8 15 15 H 1.48494 * 109.47116 * 90.00209 * 14 12 10 16 16 H 1.48502 * 109.46780 * 210.00169 * 14 12 10 17 17 H 1.48494 * 109.46884 * 329.99799 * 14 12 10 18 18 C 1.52519 * 107.56826 * 291.37293 * 8 7 6 19 19 C 1.49399 * 113.30939 * 54.71264 * 18 8 7 20 20 H 1.08998 * 106.37980 * 209.54641 * 19 18 8 21 21 N 1.36744 * 122.78616 * 180.02562 * 2 1 3 22 22 C 1.46502 * 126.42336 * 5.12651 * 21 2 1 23 23 C 1.52997 * 117.49696 * 192.19589 * 22 21 2 24 24 C 1.52995 * 60.00008 * 252.51148 * 23 22 21 25 25 H 1.09008 * 109.46778 * 264.90072 * 1 2 3 26 26 H 1.09000 * 109.46944 * 24.89528 * 1 2 3 27 27 H 1.08993 * 109.47642 * 144.90003 * 1 2 3 28 28 H 1.08998 * 108.87616 * 90.06028 * 6 4 3 29 29 H 1.09005 * 108.78835 * 331.78041 * 6 4 3 30 30 H 1.09008 * 109.75250 * 298.86406 * 7 6 4 31 31 H 1.09000 * 109.75760 * 178.17763 * 7 6 4 32 32 H 0.97003 * 120.00243 * 179.97438 * 13 12 10 33 33 H 1.09007 * 108.70951 * 175.69774 * 18 8 7 34 34 H 1.08998 * 108.71867 * 293.71590 * 18 8 7 35 35 H 1.08996 * 115.54564 * 337.90437 * 22 21 2 36 36 H 1.09010 * 117.49695 * 359.97438 * 23 22 21 37 37 H 1.09000 * 117.50303 * 145.01698 * 23 22 21 38 38 H 1.08997 * 117.49917 * 252.51178 * 24 23 22 39 39 H 1.08999 * 117.50178 * 107.49170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2024 1.0795 0.0000 4 6 3.6465 0.7469 -0.0255 5 1 4.1460 1.2055 0.8281 6 6 4.2253 1.2952 -1.3157 7 6 5.3852 0.4627 -1.8435 8 6 4.8795 -0.9683 -2.0701 9 1 3.9667 -0.9481 -2.6655 10 6 5.9346 -1.7774 -2.7794 11 1 6.3404 -2.6630 -2.3130 12 6 6.3820 -1.3871 -4.0238 13 7 7.3032 -2.0929 -4.6426 14 14 5.6807 0.1451 -4.8302 15 1 6.4941 1.3252 -4.4419 16 1 5.7124 -0.0139 -6.3064 17 1 4.2783 0.3417 -4.3835 18 6 4.5915 -1.5770 -0.7016 19 6 3.6543 -0.7576 0.1245 20 1 3.9206 -0.9418 1.1653 21 7 2.2475 -1.1496 -0.0005 22 6 1.7314 -2.5166 -0.1065 23 6 2.6985 -3.6624 0.1982 24 6 2.2677 -3.3880 -1.2440 25 1 -0.3633 -0.0913 1.0237 26 1 -0.3633 0.9322 -0.4326 27 1 -0.3634 -0.8407 -0.5909 28 1 4.5743 2.3130 -1.1411 29 1 3.4391 1.3205 -2.0704 30 1 6.1955 0.4558 -1.1143 31 1 5.7407 0.8812 -2.7851 32 1 7.6177 -1.8185 -5.5182 33 1 4.1584 -2.5672 -0.8434 34 1 5.5321 -1.6837 -0.1613 35 1 0.6880 -2.6487 0.1798 36 1 3.7189 -3.3990 0.4770 37 1 2.2916 -4.5486 0.6851 38 1 1.5772 -4.0936 -1.7059 39 1 3.0044 -2.9441 -1.9136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:38 Heat of formation + Delta-G solvation = 75.724872 kcal Electronic energy + Delta-G solvation = -19347.346030 eV Core-core repulsion = 16677.638360 eV Total energy + Delta-G solvation = -2669.707670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83347 -36.92111 -36.13313 -32.55729 -31.55656 -30.76987 -29.28087 -27.57606 -24.44029 -22.75769 -22.19272 -21.56246 -20.76775 -19.19824 -18.22517 -16.83075 -16.31478 -15.64600 -14.83957 -14.56520 -14.23268 -13.68648 -13.41874 -13.16449 -12.88377 -12.65243 -12.60557 -11.97426 -11.84569 -11.78043 -11.32464 -11.24294 -11.13308 -10.82776 -10.49979 -10.38180 -10.12435 -9.94085 -9.88880 -9.56561 -9.33863 -9.17782 -8.80316 -8.49094 -7.37660 -6.07248 -4.06430 2.75197 3.23780 3.28750 3.40115 3.43960 4.02329 4.42407 4.51493 4.86835 4.93421 4.95923 5.08021 5.24378 5.29606 5.38635 5.54211 5.61403 5.72773 5.75209 5.78456 5.85066 5.94894 6.07293 6.15454 6.20052 6.23215 6.37204 6.45485 6.50345 6.62339 6.75433 6.86343 6.93854 7.03479 7.24800 7.54912 7.77696 7.88084 8.29754 8.51677 8.96017 9.56164 11.05668 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023629 B = 0.009072 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.708238 B = 3085.739956 C = 3670.636045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.361 3.639 3 N -0.576 5.576 4 C 0.068 3.932 5 H 0.083 0.917 6 C -0.104 4.104 7 C -0.123 4.123 8 C 0.024 3.976 9 H 0.025 0.975 10 C -0.512 4.512 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.901 5.901 14 Si 0.885 3.115 15 H -0.278 1.278 16 H -0.299 1.299 17 H -0.265 1.265 18 C -0.128 4.128 19 C 0.130 3.870 20 H 0.040 0.960 21 N -0.607 5.607 22 C 0.102 3.898 23 C -0.192 4.192 24 C -0.203 4.203 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.263 0.737 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.534 0.491 9.824 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.084 3.916 3 N -0.304 5.304 4 C -0.041 4.041 5 H 0.101 0.899 6 C -0.142 4.142 7 C -0.160 4.160 8 C 0.006 3.994 9 H 0.043 0.957 10 C -0.550 4.550 11 H 0.091 0.909 12 C -0.130 4.130 13 N -0.540 5.540 14 Si 0.715 3.285 15 H -0.206 1.206 16 H -0.226 1.226 17 H -0.190 1.190 18 C -0.166 4.166 19 C 0.025 3.975 20 H 0.058 0.942 21 N -0.327 5.327 22 C -0.004 4.004 23 C -0.230 4.230 24 C -0.242 4.242 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.448 1.371 9.713 15.849 hybrid contribution 0.227 0.021 -0.530 0.577 sum -12.221 1.392 9.183 15.350 Atomic orbital electron populations 1.20533 0.87370 1.04067 1.03155 1.23087 0.95002 0.83434 0.90103 1.74745 1.02770 1.23810 1.29077 1.21848 0.91248 0.91940 0.99112 0.89880 1.21169 0.98723 0.98759 0.95595 1.21928 0.96373 0.98051 0.99684 1.19042 0.96675 0.91650 0.92077 0.95722 1.21009 1.20810 1.11259 1.01910 0.90915 1.24987 0.94476 0.96600 0.96975 1.69899 1.29545 1.39450 1.15075 0.86880 0.80527 0.83654 0.77390 1.20560 1.22631 1.19003 1.21409 0.97418 1.00024 0.97738 1.20677 0.81937 0.95508 0.99337 0.94216 1.47653 1.05490 1.03154 1.76451 1.21242 0.96522 0.78654 1.03965 1.23503 1.01016 0.98864 0.99654 1.23841 1.04826 1.03122 0.92402 0.90160 0.89575 0.90652 0.92898 0.92548 0.92236 0.92997 0.92715 0.89491 0.91674 0.85744 0.87445 0.88420 0.88560 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.90 36.01 0.36 -0.64 16 2 C 0.36 5.63 7.67 -155.54 -1.19 4.44 16 3 N -0.58 -10.35 11.05 -52.17 -0.58 -10.92 16 4 C 0.07 1.25 3.93 -68.57 -0.27 0.98 16 5 H 0.08 1.44 8.14 -51.92 -0.42 1.01 16 6 C -0.10 -2.08 5.47 -27.81 -0.15 -2.23 16 7 C -0.12 -2.72 4.74 -26.89 -0.13 -2.84 16 8 C 0.02 0.57 1.42 -91.78 -0.13 0.44 16 9 H 0.02 0.62 7.10 -51.93 -0.37 0.25 16 10 C -0.51 -14.14 9.16 -34.44 -0.32 -14.46 16 11 H 0.07 2.16 8.00 -52.49 -0.42 1.74 16 12 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 13 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 14 Si 0.88 22.46 24.44 -169.99 -4.15 18.30 16 15 H -0.28 -6.92 6.81 56.52 0.38 -6.53 16 16 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 17 H -0.27 -6.60 6.56 56.52 0.37 -6.23 16 18 C -0.13 -2.50 3.50 -28.75 -0.10 -2.60 16 19 C 0.13 2.28 2.78 -70.57 -0.20 2.08 16 20 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 21 N -0.61 -9.52 3.32 -159.31 -0.53 -10.05 16 22 C 0.10 1.32 6.40 -67.93 -0.43 0.88 16 23 C -0.19 -2.44 9.46 -26.73 -0.25 -2.69 16 24 C -0.20 -2.86 9.61 -26.74 -0.26 -3.11 16 25 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.70 7.43 -51.93 -0.39 0.31 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 30 H 0.06 1.27 8.10 -51.92 -0.42 0.84 16 31 H 0.05 1.24 3.30 -51.93 -0.17 1.07 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.09 1.63 2.50 -51.93 -0.13 1.50 16 34 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.13 1.23 7.48 -51.93 -0.39 0.84 16 36 H 0.11 1.53 5.81 -51.92 -0.30 1.23 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.12 2.19 5.78 -51.93 -0.30 1.89 16 LS Contribution 289.51 15.07 4.36 4.36 Total: -1.00 -31.23 289.51 -9.15 -40.38 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.86 Total: 2.49 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -3.17 Total: -17.80 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.33 Total: -47.74 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.15 Total: 18.30 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.23 -9.15 -40.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.106 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds