Wall clock time and date at job start Mon Mar 30 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28408 * 122.78996 * 2 1 4 4 C 1.48216 * 109.81851 * 181.04837 * 3 2 1 5 5 H 1.09008 * 109.78873 * 236.62585 * 4 3 2 6 6 C 1.51665 * 107.77869 * 117.02646 * 4 3 2 7 7 C 1.52220 * 112.82962 * 210.95091 * 6 4 3 8 8 C 1.53459 * 108.06455 * 58.51786 * 7 6 4 9 9 H 1.08998 * 109.83583 * 50.89093 * 8 7 6 10 10 C 1.50697 * 109.84020 * 171.78912 * 8 7 6 11 11 H 1.08000 * 120.00337 * 120.00240 * 10 8 7 12 12 C 1.37877 * 120.00235 * 300.00356 * 10 8 7 13 13 N 1.31515 * 120.00329 * 179.97438 * 12 10 8 14 14 Si 1.86809 * 119.99787 * 0.02562 * 12 10 8 15 15 H 1.48494 * 109.47116 * 90.00209 * 14 12 10 16 16 H 1.48502 * 109.46780 * 210.00169 * 14 12 10 17 17 H 1.48494 * 109.46884 * 329.99799 * 14 12 10 18 18 C 1.52519 * 107.56826 * 291.37293 * 8 7 6 19 19 C 1.49399 * 113.30939 * 54.71264 * 18 8 7 20 20 H 1.08998 * 106.37980 * 209.54641 * 19 18 8 21 21 N 1.36744 * 122.78616 * 180.02562 * 2 1 3 22 22 C 1.46502 * 126.42336 * 5.12651 * 21 2 1 23 23 C 1.52997 * 117.49696 * 192.19589 * 22 21 2 24 24 C 1.52995 * 60.00008 * 252.51148 * 23 22 21 25 25 H 1.09008 * 109.46778 * 264.90072 * 1 2 3 26 26 H 1.09000 * 109.46944 * 24.89528 * 1 2 3 27 27 H 1.08993 * 109.47642 * 144.90003 * 1 2 3 28 28 H 1.08998 * 108.87616 * 90.06028 * 6 4 3 29 29 H 1.09005 * 108.78835 * 331.78041 * 6 4 3 30 30 H 1.09008 * 109.75250 * 298.86406 * 7 6 4 31 31 H 1.09000 * 109.75760 * 178.17763 * 7 6 4 32 32 H 0.97003 * 120.00243 * 179.97438 * 13 12 10 33 33 H 1.09007 * 108.70951 * 175.69774 * 18 8 7 34 34 H 1.08998 * 108.71867 * 293.71590 * 18 8 7 35 35 H 1.08996 * 115.54564 * 337.90437 * 22 21 2 36 36 H 1.09010 * 117.49695 * 359.97438 * 23 22 21 37 37 H 1.09000 * 117.50303 * 145.01698 * 23 22 21 38 38 H 1.08997 * 117.49917 * 252.51178 * 24 23 22 39 39 H 1.08999 * 117.50178 * 107.49170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2024 1.0795 0.0000 4 6 3.6465 0.7469 -0.0255 5 1 4.1460 1.2055 0.8281 6 6 4.2253 1.2952 -1.3157 7 6 5.3852 0.4627 -1.8435 8 6 4.8795 -0.9683 -2.0701 9 1 3.9667 -0.9481 -2.6655 10 6 5.9346 -1.7774 -2.7794 11 1 6.3404 -2.6630 -2.3130 12 6 6.3820 -1.3871 -4.0238 13 7 7.3032 -2.0929 -4.6426 14 14 5.6807 0.1451 -4.8302 15 1 6.4941 1.3252 -4.4419 16 1 5.7124 -0.0139 -6.3064 17 1 4.2783 0.3417 -4.3835 18 6 4.5915 -1.5770 -0.7016 19 6 3.6543 -0.7576 0.1245 20 1 3.9206 -0.9418 1.1653 21 7 2.2475 -1.1496 -0.0005 22 6 1.7314 -2.5166 -0.1065 23 6 2.6985 -3.6624 0.1982 24 6 2.2677 -3.3880 -1.2440 25 1 -0.3633 -0.0913 1.0237 26 1 -0.3633 0.9322 -0.4326 27 1 -0.3634 -0.8407 -0.5909 28 1 4.5743 2.3130 -1.1411 29 1 3.4391 1.3205 -2.0704 30 1 6.1955 0.4558 -1.1143 31 1 5.7407 0.8812 -2.7851 32 1 7.6177 -1.8185 -5.5182 33 1 4.1584 -2.5672 -0.8434 34 1 5.5321 -1.6837 -0.1613 35 1 0.6880 -2.6487 0.1798 36 1 3.7189 -3.3990 0.4770 37 1 2.2916 -4.5486 0.6851 38 1 1.5772 -4.0936 -1.7059 39 1 3.0044 -2.9441 -1.9136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:38 Heat of formation + Delta-G solvation = 55.331065 kcal Electronic energy + Delta-G solvation = -19348.230372 eV Core-core repulsion = 16677.638360 eV Total energy + Delta-G solvation = -2670.592012 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15943 -38.07408 -37.75103 -34.57533 -32.92444 -32.24899 -30.75071 -28.94846 -26.26417 -24.17853 -23.29640 -22.99959 -22.31791 -20.50305 -19.68753 -18.94347 -17.55461 -17.24475 -16.33278 -15.93276 -15.80243 -15.09589 -14.89682 -14.68618 -14.35257 -14.05884 -13.98812 -13.55202 -13.35820 -13.01601 -12.80143 -12.68886 -12.54035 -12.32936 -12.09480 -11.90570 -11.78129 -11.55890 -11.23991 -11.19512 -11.04472 -10.93131 -10.72988 -10.36490 -8.65797 -8.33850 -6.36260 1.23597 1.29565 1.39793 1.57411 2.08123 2.26963 2.97338 3.01321 3.35287 3.58703 3.71813 3.87762 4.00131 4.06388 4.13373 4.24933 4.31919 4.42679 4.49535 4.54794 4.71916 4.78602 4.79892 4.80676 4.84207 4.87238 5.00734 5.03444 5.12079 5.19124 5.24518 5.31752 5.37126 5.48063 5.55769 5.66764 5.72483 6.27735 6.69848 6.73873 7.07093 7.29460 8.82408 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023629 B = 0.009072 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.708238 B = 3085.739956 C = 3670.636045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.360 3.640 3 N -0.606 5.606 4 C 0.064 3.936 5 H 0.092 0.908 6 C -0.095 4.095 7 C -0.122 4.122 8 C 0.031 3.969 9 H 0.007 0.993 10 C -0.511 4.511 11 H 0.039 0.961 12 C 0.019 3.981 13 N -0.945 5.945 14 Si 0.943 3.057 15 H -0.267 1.267 16 H -0.297 1.297 17 H -0.260 1.260 18 C -0.120 4.120 19 C 0.129 3.871 20 H 0.051 0.949 21 N -0.611 5.611 22 C 0.107 3.893 23 C -0.186 4.186 24 C -0.220 4.220 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.265 0.735 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.168 0.832 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.233 0.973 11.330 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.084 3.916 3 N -0.336 5.336 4 C -0.046 4.046 5 H 0.110 0.890 6 C -0.133 4.133 7 C -0.160 4.160 8 C 0.012 3.988 9 H 0.025 0.975 10 C -0.549 4.549 11 H 0.057 0.943 12 C -0.178 4.178 13 N -0.586 5.586 14 Si 0.771 3.229 15 H -0.194 1.194 16 H -0.225 1.225 17 H -0.185 1.185 18 C -0.158 4.158 19 C 0.024 3.976 20 H 0.069 0.931 21 N -0.331 5.331 22 C 0.002 3.998 23 C -0.223 4.223 24 C -0.259 4.259 25 H 0.125 0.875 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.185 0.815 36 H 0.104 0.896 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.164 1.842 11.233 18.961 hybrid contribution 1.092 -0.249 -0.981 1.488 sum -14.072 1.592 10.253 17.484 Atomic orbital electron populations 1.20712 0.83694 1.05085 1.05272 1.23914 0.97051 0.82641 0.87985 1.74750 1.02096 1.25042 1.31668 1.21843 0.92325 0.92141 0.98264 0.88993 1.21058 0.96998 0.99240 0.96006 1.21840 0.97598 0.97309 0.99205 1.18873 0.94236 0.92258 0.93456 0.97496 1.21298 1.21122 1.10477 1.02023 0.94295 1.25726 0.94877 0.99495 0.97740 1.70024 1.31366 1.41449 1.15752 0.85928 0.80124 0.80515 0.76304 1.19359 1.22467 1.18499 1.21294 0.98007 1.00739 0.95765 1.20481 0.83024 0.95020 0.99093 0.93116 1.47817 1.04581 1.04524 1.76151 1.21703 0.98405 0.77092 1.02564 1.23538 1.00180 1.00146 0.98470 1.23729 1.04915 1.04617 0.92605 0.87490 0.89396 0.88640 0.91330 0.94394 0.91700 0.94627 0.92560 0.88914 0.92401 0.81457 0.89605 0.85091 0.86178 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.90 71.24 0.71 -0.84 16 2 C 0.36 10.18 7.67 138.17 1.06 11.24 16 3 N -0.61 -20.51 11.05 -318.97 -3.52 -24.04 16 4 C 0.06 2.26 3.93 43.63 0.17 2.44 16 5 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 6 C -0.09 -3.69 5.47 29.90 0.16 -3.53 16 7 C -0.12 -5.38 4.74 30.49 0.14 -5.24 16 8 C 0.03 1.45 1.42 -11.55 -0.02 1.44 16 9 H 0.01 0.36 7.10 -2.39 -0.02 0.34 16 10 C -0.51 -29.32 9.16 25.60 0.23 -29.09 16 11 H 0.04 2.43 8.00 -2.91 -0.02 2.41 16 12 C 0.02 1.12 5.45 84.65 0.46 1.58 16 13 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 14 Si 0.94 47.26 24.44 68.60 1.68 48.93 16 15 H -0.27 -12.83 6.81 99.48 0.68 -12.15 16 16 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 17 H -0.26 -12.71 6.56 99.48 0.65 -12.06 16 18 C -0.12 -4.75 3.50 29.28 0.10 -4.65 16 19 C 0.13 4.38 2.78 43.24 0.12 4.50 16 20 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 21 N -0.61 -17.66 3.32 -657.95 -2.19 -19.84 16 22 C 0.11 2.40 6.40 44.99 0.29 2.69 16 23 C -0.19 -4.25 9.46 30.59 0.29 -3.96 16 24 C -0.22 -5.85 9.61 30.59 0.29 -5.56 16 25 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.29 7.43 -2.39 -0.02 1.27 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.04 1.59 7.92 -2.38 -0.02 1.58 16 30 H 0.06 2.76 8.10 -2.38 -0.02 2.74 16 31 H 0.04 1.68 3.30 -2.39 -0.01 1.67 16 32 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 33 H 0.09 3.55 2.50 -2.38 -0.01 3.55 16 34 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 35 H 0.17 2.37 7.48 -2.39 -0.02 2.35 16 36 H 0.09 2.37 5.81 -2.38 -0.01 2.35 16 37 H 0.13 2.14 8.14 -2.39 -0.02 2.13 16 38 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.07 2.74 5.78 -2.39 -0.01 2.72 16 Total: -1.00 -69.91 289.51 1.24 -68.67 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.96 Total: 14.56 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 4.02 Total: -28.97 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -5.41 Total: -103.19 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.68 Total: 48.93 kcal Total: -69.91 1.24 -68.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.998 kcal (2) G-P(sol) polarization free energy of solvation -69.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds