Wall clock time and date at job start Mon Mar 30 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39995 * 126.03021 * 2 1 4 4 C 1.30740 * 108.21277 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.88316 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46903 * 353.76892 * 5 4 3 7 7 C 1.52993 * 109.47380 * 233.76812 * 5 4 3 8 8 C 1.53002 * 109.47047 * 113.76316 * 5 4 3 9 9 C 1.40179 * 108.24017 * 0.26556 * 4 3 2 10 10 C 1.35145 * 107.85955 * 359.56281 * 9 4 3 11 11 C 1.51315 * 110.30878 * 180.25468 * 10 9 4 12 12 C 1.54447 * 104.99047 * 17.19546 * 11 10 9 13 13 C 1.51362 * 141.89226 * 180.59228 * 9 4 3 14 14 H 1.08996 * 110.10783 * 281.24480 * 13 9 4 15 15 C 1.50700 * 110.57650 * 43.38639 * 13 9 4 16 16 H 1.08006 * 120.00036 * 51.23349 * 15 13 9 17 17 C 1.37882 * 120.00251 * 231.22834 * 15 13 9 18 18 N 1.31507 * 120.00251 * 173.91363 * 17 15 13 19 19 Si 1.86803 * 119.99474 * 353.91840 * 17 15 13 20 20 H 1.48499 * 109.46988 * 84.51226 * 19 17 15 21 21 H 1.48507 * 109.46820 * 204.51169 * 19 17 15 22 22 H 1.48493 * 109.47077 * 324.51092 * 19 17 15 23 23 H 1.08999 * 109.47203 * 90.02196 * 1 2 3 24 24 H 1.09000 * 109.47582 * 210.02302 * 1 2 3 25 25 H 1.09005 * 109.47214 * 330.01942 * 1 2 3 26 26 H 1.09005 * 109.47012 * 299.99514 * 6 5 4 27 27 H 1.08992 * 109.47298 * 59.99353 * 6 5 4 28 28 H 1.08998 * 109.47296 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.47501 * 180.02562 * 7 5 4 30 30 H 1.08999 * 109.47172 * 299.99926 * 7 5 4 31 31 H 1.09003 * 109.47749 * 59.99597 * 7 5 4 32 32 H 1.08999 * 109.47257 * 304.99073 * 8 5 4 33 33 H 1.09000 * 109.46753 * 64.99168 * 8 5 4 34 34 H 1.09003 * 109.46929 * 184.98236 * 8 5 4 35 35 H 1.08992 * 110.33931 * 136.07584 * 11 10 9 36 36 H 1.09001 * 110.33463 * 258.21915 * 11 10 9 37 37 H 1.08995 * 110.92513 * 92.45785 * 12 11 10 38 38 H 1.09003 * 110.92602 * 216.11019 * 12 11 10 39 39 H 0.97003 * 120.00044 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2885 1.1321 0.0000 4 6 3.5332 0.7321 0.0006 5 6 4.7477 1.6242 0.0002 6 6 4.3098 3.0818 -0.1575 7 6 5.6637 1.2383 -1.1628 8 6 5.5025 1.4586 1.3207 9 6 3.5435 -0.6696 -0.0052 10 6 2.2603 -1.0936 0.0005 11 6 2.2069 -2.6058 0.0010 12 6 3.6190 -3.0554 0.4358 13 6 4.4863 -1.8537 0.0012 14 1 4.8880 -2.0183 -0.9986 15 6 5.6065 -1.6335 0.9849 16 1 5.3834 -1.3474 2.0022 17 6 6.9163 -1.7974 0.5864 18 7 7.8968 -1.4903 1.4072 19 14 7.2979 -2.4556 -1.1197 20 1 7.2788 -1.3378 -2.0972 21 1 8.6416 -3.0880 -1.1172 22 1 6.2768 -3.4641 -1.5010 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 3.7720 3.1998 -1.0982 27 1 3.6571 3.3567 0.6710 28 1 5.1881 3.7271 -0.1573 29 1 6.5424 1.8832 -1.1628 30 1 5.9757 0.1999 -1.0505 31 1 5.1260 1.3562 -2.1036 32 1 4.8246 1.6479 2.1530 33 1 5.8908 0.4426 1.3922 34 1 6.3300 2.1672 1.3576 35 1 1.4610 -2.9583 0.7133 36 1 1.9805 -2.9771 -0.9985 37 1 3.6665 -3.1997 1.5151 38 1 3.9182 -3.9619 -0.0904 39 1 8.8182 -1.6053 1.1267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261081959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:12 Heat of formation + Delta-G solvation = 53.688760 kcal Electronic energy + Delta-G solvation = -19359.883573 eV Core-core repulsion = 16689.220345 eV Total energy + Delta-G solvation = -2670.663228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42465 -37.75002 -37.37958 -34.30314 -33.24190 -30.19887 -29.25800 -28.00306 -27.67409 -26.99814 -25.05055 -22.91775 -21.31673 -20.15619 -19.20857 -18.88152 -17.26789 -16.61095 -15.91407 -15.59400 -15.09465 -14.86977 -14.77159 -14.63267 -14.07784 -13.80953 -13.53209 -13.41033 -13.23872 -12.97291 -12.85989 -12.77681 -12.48878 -12.28643 -12.11571 -11.78373 -11.77006 -11.71898 -11.62013 -11.24546 -11.19060 -11.02727 -10.41995 -9.78387 -8.80568 -8.10714 -6.05679 1.06245 1.41784 1.44460 1.51326 1.68593 2.04817 2.46425 3.23543 3.53406 3.83084 4.00209 4.13586 4.21615 4.22242 4.39096 4.48615 4.50846 4.66439 4.73281 4.78038 4.81526 4.86232 4.93519 4.94971 5.02791 5.08457 5.14601 5.21201 5.25295 5.37006 5.45734 5.56586 5.62386 5.65765 5.83736 6.00465 6.01883 6.40442 6.54295 6.91476 6.99339 7.52492 9.04885 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.011364 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.474080 B = 2463.262920 C = 3368.774625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.372 5.372 3 N -0.323 5.323 4 C 0.097 3.903 5 C 0.022 3.978 6 C -0.123 4.123 7 C -0.135 4.135 8 C -0.152 4.152 9 C -0.239 4.239 10 C 0.025 3.975 11 C -0.027 4.027 12 C -0.111 4.111 13 C 0.072 3.928 14 H 0.033 0.967 15 C -0.471 4.471 16 H 0.032 0.968 17 C 0.031 3.969 18 N -0.940 5.940 19 Si 0.913 3.087 20 H -0.267 1.267 21 H -0.297 1.297 22 H -0.249 1.249 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 1.023 -5.641 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.155 5.155 3 N -0.145 5.145 4 C -0.068 4.068 5 C 0.020 3.980 6 C -0.181 4.181 7 C -0.193 4.193 8 C -0.209 4.209 9 C -0.250 4.250 10 C -0.102 4.102 11 C -0.066 4.066 12 C -0.149 4.149 13 C 0.052 3.948 14 H 0.051 0.949 15 C -0.509 4.509 16 H 0.051 0.949 17 C -0.166 4.166 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.192 1.192 21 H -0.224 1.224 22 H -0.173 1.173 23 H 0.102 0.898 24 H 0.123 0.877 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.272 2.042 -5.624 14.558 hybrid contribution 1.166 -0.700 -0.321 1.398 sum -12.106 1.341 -5.945 13.553 Atomic orbital electron populations 1.22069 0.72592 1.05289 1.04131 1.48103 1.06931 1.01703 1.58791 1.77100 1.00912 1.07915 1.28551 1.21901 0.92758 0.93230 0.98864 1.18840 0.89531 0.93197 0.96409 1.21711 1.01019 0.93881 1.01448 1.21841 0.98661 1.02265 0.96494 1.22137 0.98510 1.05791 0.94496 1.21454 0.96158 0.94078 1.13304 1.22286 0.91281 0.93911 1.02719 1.20740 0.98845 0.83723 1.03315 1.22543 0.92946 0.98364 1.01042 1.18225 0.92564 0.88789 0.95214 0.94906 1.20804 0.89830 1.43882 0.96380 0.94932 1.25569 0.96108 0.95433 0.99499 1.70025 0.99580 1.50371 1.38100 0.86293 0.77216 0.80096 0.82486 1.19229 1.22352 1.17317 0.89825 0.87658 0.89298 0.92750 0.93219 0.91230 0.91646 0.93010 0.92952 0.95321 0.88752 0.92872 0.88866 0.88259 0.92124 0.90225 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.13 11.47 127.77 1.47 3.60 16 2 N -0.37 -12.85 4.02 -355.25 -1.43 -14.28 16 3 N -0.32 -13.04 11.86 -47.24 -0.56 -13.60 16 4 C 0.10 4.20 5.62 43.19 0.24 4.44 16 5 C 0.02 0.91 0.95 -52.93 -0.05 0.86 16 6 C -0.12 -4.19 7.96 71.98 0.57 -3.62 16 7 C -0.13 -5.46 8.30 71.98 0.60 -4.86 16 8 C -0.15 -6.81 8.42 71.98 0.61 -6.20 16 9 C -0.24 -10.50 5.67 -19.90 -0.11 -10.61 16 10 C 0.03 0.93 7.57 41.52 0.31 1.25 16 11 C -0.03 -0.80 6.79 30.54 0.21 -0.59 16 12 C -0.11 -4.06 6.62 31.57 0.21 -3.85 16 13 C 0.07 3.26 2.13 -11.59 -0.02 3.24 16 14 H 0.03 1.52 5.01 -2.39 -0.01 1.51 16 15 C -0.47 -25.13 5.78 25.60 0.15 -24.98 16 16 H 0.03 1.99 7.59 -2.91 -0.02 1.97 16 17 C 0.03 1.71 4.77 84.66 0.40 2.11 16 18 N -0.94 -55.51 13.96 21.45 0.30 -55.21 16 19 Si 0.91 42.49 25.55 68.60 1.75 44.25 16 20 H -0.27 -12.11 6.87 99.48 0.68 -11.42 16 21 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 22 H -0.25 -10.72 6.90 99.48 0.69 -10.03 16 23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.09 1.76 8.14 -2.38 -0.02 1.75 16 26 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 2.39 4.70 -2.39 -0.01 2.38 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 4.97 4.09 -2.39 -0.01 4.96 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.06 2.35 7.91 -2.39 -0.02 2.33 16 38 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -66.06 301.77 5.62 -60.44 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.98 Total: 17.62 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 4.58 Total: -39.21 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -1.69 Total: -83.09 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.75 Total: 44.25 kcal Total: -66.06 5.62 -60.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.125 kcal (2) G-P(sol) polarization free energy of solvation -66.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds