Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.39995 * 126.02939 * 2 1 4 4 C 1.30743 * 108.21197 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.88023 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46769 * 25.82806 * 5 4 3 7 7 C 1.52996 * 109.47015 * 145.83323 * 5 4 3 8 8 C 1.53002 * 109.46993 * 265.83374 * 5 4 3 9 9 C 1.40170 * 108.23667 * 0.02562 * 4 3 2 10 10 C 1.35131 * 107.86549 * 359.97438 * 9 4 3 11 11 C 1.51326 * 110.30761 * 179.97438 * 10 9 4 12 12 C 1.54418 * 105.00496 * 343.13448 * 11 10 9 13 13 C 1.51373 * 141.88815 * 180.02562 * 9 4 3 14 14 H 1.09001 * 110.32637 * 78.00827 * 13 9 4 15 15 C 1.50693 * 110.33235 * 315.87908 * 13 9 4 16 16 H 1.08003 * 120.00396 * 354.63896 * 15 13 9 17 17 C 1.37879 * 119.99848 * 174.63396 * 15 13 9 18 18 N 1.31517 * 120.00030 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00324 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46698 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47011 * 119.99828 * 19 17 15 22 22 H 1.48490 * 109.47371 * 240.00302 * 19 17 15 23 23 H 1.08994 * 109.47330 * 90.01913 * 1 2 3 24 24 H 1.08998 * 109.46723 * 210.02417 * 1 2 3 25 25 H 1.09002 * 109.46598 * 330.01916 * 1 2 3 26 26 H 1.09001 * 109.47266 * 60.00648 * 6 5 4 27 27 H 1.09004 * 109.46592 * 179.97438 * 6 5 4 28 28 H 1.08998 * 109.47568 * 299.99430 * 6 5 4 29 29 H 1.08997 * 109.47280 * 59.99952 * 7 5 4 30 30 H 1.09001 * 109.46859 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.46694 * 299.99366 * 7 5 4 32 32 H 1.08997 * 109.47586 * 65.03519 * 8 5 4 33 33 H 1.08998 * 109.47201 * 185.04318 * 8 5 4 34 34 H 1.09011 * 109.46909 * 305.03668 * 8 5 4 35 35 H 1.08997 * 110.33648 * 101.94803 * 11 10 9 36 36 H 1.09000 * 110.33680 * 224.19578 * 11 10 9 37 37 H 1.09000 * 110.88856 * 267.49877 * 12 11 10 38 38 H 1.08996 * 110.97813 * 143.86734 * 12 11 10 39 39 H 0.97000 * 120.00299 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2885 1.1322 0.0000 4 6 3.5333 0.7321 0.0006 5 6 4.7478 1.6243 0.0002 6 6 4.3898 2.9730 0.6277 7 6 5.8652 0.9649 0.8110 8 6 5.2211 1.8408 -1.4385 9 6 3.5435 -0.6696 0.0003 10 6 2.2604 -1.0935 0.0002 11 6 2.2070 -2.6058 -0.0007 12 6 3.6193 -3.0555 -0.4338 13 6 4.4865 -1.8537 0.0010 14 1 4.8875 -2.0178 1.0012 15 6 5.6071 -1.6312 -0.9816 16 1 5.5992 -0.7616 -1.6220 17 6 6.6427 -2.5379 -1.0630 18 7 6.6522 -3.5971 -0.2835 19 14 8.0315 -2.2626 -2.2816 20 1 7.7866 -1.0071 -3.0359 21 1 9.3189 -2.1563 -1.5490 22 1 8.0934 -3.4051 -3.2280 23 1 -0.3634 -0.0003 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3632 0.8902 0.5136 26 1 4.0526 2.8189 1.6527 27 1 5.2684 3.6182 0.6278 28 1 3.5938 3.4428 0.0499 29 1 6.1201 0.0041 0.3640 30 1 6.7434 1.6105 0.8111 31 1 5.5279 0.8109 1.8360 32 1 4.4602 2.3903 -1.9927 33 1 6.1499 2.4112 -1.4335 34 1 5.3906 0.8748 -1.9145 35 1 1.9823 -2.9775 0.9990 36 1 1.4613 -2.9581 -0.7133 37 1 3.6672 -3.2002 -1.5131 38 1 3.9187 -3.9619 0.0923 39 1 7.3809 -4.2348 -0.3405 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261081960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = 67.679037 kcal Electronic energy + Delta-G solvation = -19177.987703 eV Core-core repulsion = 16507.931139 eV Total energy + Delta-G solvation = -2670.056564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84363 -36.26613 -35.62577 -32.24469 -31.85620 -28.09285 -27.56306 -26.59179 -26.04679 -25.54832 -23.46095 -21.33843 -19.75165 -18.59043 -17.70805 -16.24437 -15.66464 -14.92410 -14.39711 -14.13819 -13.64585 -13.45165 -13.25086 -12.84885 -12.23121 -12.19138 -11.97225 -11.71706 -11.58561 -11.41668 -11.34831 -11.03462 -10.86846 -10.73177 -10.57633 -10.36994 -10.29953 -10.16730 -9.87024 -9.44528 -9.23066 -8.85736 -8.38095 -8.27732 -7.15602 -5.97221 -3.96993 2.61936 3.06412 3.32163 3.41290 3.44979 3.73172 4.48647 4.93273 5.22315 5.33861 5.39721 5.42151 5.54528 5.60791 5.68372 5.83653 5.96059 6.02651 6.12846 6.24183 6.27230 6.36677 6.42977 6.49110 6.60105 6.68265 6.70075 6.86463 7.01825 7.06098 7.16962 7.25733 7.53205 7.57441 7.72402 7.79099 7.92818 8.03665 8.51008 8.58124 9.06169 9.64350 11.11339 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.010132 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.491903 B = 2762.889187 C = 3786.324591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.377 5.377 3 N -0.310 5.310 4 C 0.107 3.893 5 C 0.024 3.976 6 C -0.134 4.134 7 C -0.159 4.159 8 C -0.140 4.140 9 C -0.191 4.191 10 C 0.016 3.984 11 C -0.043 4.043 12 C -0.092 4.092 13 C 0.114 3.886 14 H 0.042 0.958 15 C -0.498 4.498 16 H 0.066 0.934 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.881 3.119 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.286 1.286 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.115 0.885 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 5.442 1.037 9.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.161 5.161 3 N -0.131 5.131 4 C -0.059 4.059 5 C 0.022 3.978 6 C -0.191 4.191 7 C -0.216 4.216 8 C -0.198 4.198 9 C -0.202 4.202 10 C -0.109 4.109 11 C -0.082 4.082 12 C -0.131 4.131 13 C 0.094 3.906 14 H 0.060 0.940 15 C -0.536 4.536 16 H 0.084 0.916 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.709 3.291 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.213 1.213 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.258 6.285 1.082 10.434 hybrid contribution 0.973 -0.551 -0.651 1.294 sum -7.285 5.734 0.431 9.281 Atomic orbital electron populations 1.21589 0.76151 1.03191 1.02148 1.47646 1.05003 1.02711 1.60702 1.77117 1.01052 1.06891 1.28039 1.21698 0.92086 0.92986 0.99105 1.18816 0.90406 0.92171 0.96412 1.21827 1.00584 0.96305 1.00428 1.22233 0.95641 1.04435 0.99321 1.21958 0.99740 1.02969 0.95157 1.21512 0.95563 0.93652 1.09453 1.21945 0.91849 0.92535 1.04529 1.20848 1.01057 0.85675 1.00613 1.22402 0.89759 1.00211 1.00691 1.17811 0.90553 0.84837 0.97368 0.93978 1.21224 1.04897 1.07744 1.19751 0.91619 1.24967 0.97887 0.95343 0.95684 1.69953 1.32419 1.11965 1.38566 0.86703 0.82614 0.78244 0.81559 1.19585 1.21087 1.21261 0.91989 0.90488 0.90352 0.93238 0.93056 0.92752 0.86694 0.93713 0.93884 0.93719 0.92828 0.90388 0.91392 0.92621 0.92108 0.91187 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.48 11.47 59.85 0.69 2.17 16 2 N -0.38 -7.19 4.02 -63.64 -0.26 -7.44 16 3 N -0.31 -6.44 11.98 33.72 0.40 -6.03 16 4 C 0.11 2.28 5.71 -82.33 -0.47 1.81 16 5 C 0.02 0.46 0.98 -155.66 -0.15 0.31 16 6 C -0.13 -2.20 8.14 37.16 0.30 -1.90 16 7 C -0.16 -3.10 8.02 37.16 0.30 -2.80 16 8 C -0.14 -2.58 8.46 37.16 0.31 -2.26 16 9 C -0.19 -4.33 5.49 -104.67 -0.57 -4.90 16 10 C 0.02 0.33 7.58 -81.90 -0.62 -0.29 16 11 C -0.04 -0.79 6.78 -26.83 -0.18 -0.97 16 12 C -0.09 -2.02 6.13 -25.23 -0.15 -2.18 16 13 C 0.11 2.75 2.06 -91.84 -0.19 2.56 16 14 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.50 -12.77 5.86 -34.44 -0.20 -12.97 16 16 H 0.07 1.69 5.02 -52.48 -0.26 1.43 16 17 C 0.06 1.64 5.38 -17.82 -0.10 1.55 16 18 N -0.89 -24.32 12.92 55.43 0.72 -23.60 16 19 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 29 H 0.11 2.59 4.31 -51.93 -0.22 2.37 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.61 5.41 -51.92 -0.28 1.33 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.40 7.91 -51.93 -0.41 0.99 16 38 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -28.84 306.67 -6.80 -35.64 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.23 Total: 1.15 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.04 Total: -19.88 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.86 Total: -37.08 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.84 -6.80 -35.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.324 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds