Wall clock time and date at job start Mon Mar 30 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.39995 * 126.02939 * 2 1 4 4 C 1.30743 * 108.21197 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.88023 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46769 * 25.82806 * 5 4 3 7 7 C 1.52996 * 109.47015 * 145.83323 * 5 4 3 8 8 C 1.53002 * 109.46993 * 265.83374 * 5 4 3 9 9 C 1.40170 * 108.23667 * 0.02562 * 4 3 2 10 10 C 1.35131 * 107.86549 * 359.97438 * 9 4 3 11 11 C 1.51326 * 110.30761 * 179.97438 * 10 9 4 12 12 C 1.54418 * 105.00496 * 343.13448 * 11 10 9 13 13 C 1.51373 * 141.88815 * 180.02562 * 9 4 3 14 14 H 1.09001 * 110.32637 * 78.00827 * 13 9 4 15 15 C 1.50693 * 110.33235 * 315.87908 * 13 9 4 16 16 H 1.08003 * 120.00396 * 354.63896 * 15 13 9 17 17 C 1.37879 * 119.99848 * 174.63396 * 15 13 9 18 18 N 1.31517 * 120.00030 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00324 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46698 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47011 * 119.99828 * 19 17 15 22 22 H 1.48490 * 109.47371 * 240.00302 * 19 17 15 23 23 H 1.08994 * 109.47330 * 90.01913 * 1 2 3 24 24 H 1.08998 * 109.46723 * 210.02417 * 1 2 3 25 25 H 1.09002 * 109.46598 * 330.01916 * 1 2 3 26 26 H 1.09001 * 109.47266 * 60.00648 * 6 5 4 27 27 H 1.09004 * 109.46592 * 179.97438 * 6 5 4 28 28 H 1.08998 * 109.47568 * 299.99430 * 6 5 4 29 29 H 1.08997 * 109.47280 * 59.99952 * 7 5 4 30 30 H 1.09001 * 109.46859 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.46694 * 299.99366 * 7 5 4 32 32 H 1.08997 * 109.47586 * 65.03519 * 8 5 4 33 33 H 1.08998 * 109.47201 * 185.04318 * 8 5 4 34 34 H 1.09011 * 109.46909 * 305.03668 * 8 5 4 35 35 H 1.08997 * 110.33648 * 101.94803 * 11 10 9 36 36 H 1.09000 * 110.33680 * 224.19578 * 11 10 9 37 37 H 1.09000 * 110.88856 * 267.49877 * 12 11 10 38 38 H 1.08996 * 110.97813 * 143.86734 * 12 11 10 39 39 H 0.97000 * 120.00299 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2885 1.1322 0.0000 4 6 3.5333 0.7321 0.0006 5 6 4.7478 1.6243 0.0002 6 6 4.3898 2.9730 0.6277 7 6 5.8652 0.9649 0.8110 8 6 5.2211 1.8408 -1.4385 9 6 3.5435 -0.6696 0.0003 10 6 2.2604 -1.0935 0.0002 11 6 2.2070 -2.6058 -0.0007 12 6 3.6193 -3.0555 -0.4338 13 6 4.4865 -1.8537 0.0010 14 1 4.8875 -2.0178 1.0012 15 6 5.6071 -1.6312 -0.9816 16 1 5.5992 -0.7616 -1.6220 17 6 6.6427 -2.5379 -1.0630 18 7 6.6522 -3.5971 -0.2835 19 14 8.0315 -2.2626 -2.2816 20 1 7.7866 -1.0071 -3.0359 21 1 9.3189 -2.1563 -1.5490 22 1 8.0934 -3.4051 -3.2280 23 1 -0.3634 -0.0003 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3632 0.8902 0.5136 26 1 4.0526 2.8189 1.6527 27 1 5.2684 3.6182 0.6278 28 1 3.5938 3.4428 0.0499 29 1 6.1201 0.0041 0.3640 30 1 6.7434 1.6105 0.8111 31 1 5.5279 0.8109 1.8360 32 1 4.4602 2.3903 -1.9927 33 1 6.1499 2.4112 -1.4335 34 1 5.3906 0.8748 -1.9145 35 1 1.9823 -2.9775 0.9990 36 1 1.4613 -2.9581 -0.7133 37 1 3.6672 -3.2002 -1.5131 38 1 3.9187 -3.9619 0.0923 39 1 7.3809 -4.2348 -0.3405 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261081960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:14 Heat of formation + Delta-G solvation = 52.245949 kcal Electronic energy + Delta-G solvation = -19178.656932 eV Core-core repulsion = 16507.931139 eV Total energy + Delta-G solvation = -2670.725793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.40838 -37.73875 -37.32554 -34.17516 -33.23079 -29.80986 -29.16529 -28.04000 -27.54247 -26.97215 -25.30027 -22.88300 -21.43267 -20.15498 -19.31215 -18.10266 -17.22353 -16.49399 -16.19254 -15.57545 -15.22260 -14.83505 -14.73743 -14.34825 -13.82924 -13.68619 -13.45554 -13.29696 -13.08212 -12.95845 -12.85146 -12.75575 -12.45967 -12.38991 -12.33320 -12.05381 -11.80804 -11.68399 -11.57153 -11.09375 -10.99836 -10.76327 -10.38233 -9.77155 -8.81838 -7.97970 -6.01982 1.06659 1.44033 1.48405 1.57599 1.68675 2.07240 2.53710 3.30733 3.55333 3.84535 4.01263 4.17976 4.23918 4.26817 4.43804 4.51713 4.52033 4.66277 4.75486 4.78398 4.86111 4.86999 4.97617 5.04302 5.10205 5.15214 5.20552 5.27097 5.31205 5.49017 5.51260 5.63828 5.75961 5.90799 5.93542 6.03402 6.06977 6.37985 6.58111 6.99037 7.05334 7.60794 9.09707 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.010132 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.491903 B = 2762.889187 C = 3786.324591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.373 5.373 3 N -0.320 5.320 4 C 0.094 3.906 5 C 0.019 3.981 6 C -0.124 4.124 7 C -0.153 4.153 8 C -0.134 4.134 9 C -0.234 4.234 10 C 0.022 3.978 11 C -0.029 4.029 12 C -0.088 4.088 13 C 0.115 3.885 14 H 0.004 0.996 15 C -0.494 4.494 16 H 0.061 0.939 17 C 0.018 3.982 18 N -0.921 5.921 19 Si 0.933 3.067 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.287 1.287 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 6.661 0.657 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.156 5.156 3 N -0.142 5.142 4 C -0.071 4.071 5 C 0.017 3.983 6 C -0.181 4.181 7 C -0.210 4.210 8 C -0.192 4.192 9 C -0.245 4.245 10 C -0.105 4.105 11 C -0.069 4.069 12 C -0.127 4.127 13 C 0.095 3.905 14 H 0.022 0.978 15 C -0.532 4.532 16 H 0.079 0.921 17 C -0.180 4.180 18 N -0.561 5.561 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.213 1.213 23 H 0.098 0.902 24 H 0.122 0.878 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.704 7.528 0.695 12.301 hybrid contribution 1.336 -0.910 -0.506 1.694 sum -8.368 6.618 0.189 10.671 Atomic orbital electron populations 1.22060 0.72676 1.05357 1.03985 1.48075 1.06886 1.01633 1.58979 1.77054 1.00955 1.07801 1.28395 1.22017 0.93053 0.92885 0.99144 1.18926 0.89429 0.93140 0.96798 1.21730 1.01671 0.94960 0.99763 1.22108 0.96960 1.03276 0.98676 1.21885 1.01078 1.01668 0.94580 1.21491 0.96206 0.94159 1.12638 1.22188 0.91644 0.93587 1.03052 1.20749 0.99196 0.84331 1.02583 1.22181 0.92171 0.98879 0.99443 1.17628 0.91049 0.86885 0.94890 0.97847 1.21430 1.05360 1.07084 1.19343 0.92074 1.25562 0.99915 0.95352 0.97219 1.70058 1.33115 1.12805 1.40115 0.85867 0.80221 0.78120 0.79748 1.19025 1.20993 1.21294 0.90233 0.87815 0.88845 0.93675 0.90607 0.92658 0.90056 0.91438 0.94575 0.92998 0.90583 0.93355 0.89269 0.89386 0.93611 0.92435 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.27 11.47 127.77 1.47 3.73 16 2 N -0.37 -13.34 4.02 -355.25 -1.43 -14.76 16 3 N -0.32 -12.82 11.98 -47.24 -0.57 -13.39 16 4 C 0.09 3.97 5.71 43.19 0.25 4.21 16 5 C 0.02 0.72 0.98 -52.93 -0.05 0.66 16 6 C -0.12 -3.82 8.14 71.98 0.59 -3.23 16 7 C -0.15 -5.97 8.02 71.98 0.58 -5.40 16 8 C -0.13 -4.79 8.46 71.98 0.61 -4.18 16 9 C -0.23 -10.66 5.49 -19.90 -0.11 -10.77 16 10 C 0.02 0.88 7.58 41.52 0.31 1.19 16 11 C -0.03 -1.03 6.78 30.53 0.21 -0.83 16 12 C -0.09 -3.92 6.13 31.57 0.19 -3.73 16 13 C 0.11 5.74 2.06 -11.58 -0.02 5.71 16 14 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 15 C -0.49 -26.11 5.86 25.60 0.15 -25.96 16 16 H 0.06 3.25 5.02 -2.91 -0.01 3.23 16 17 C 0.02 0.95 5.38 84.65 0.46 1.40 16 18 N -0.92 -51.91 12.92 21.45 0.28 -51.63 16 19 Si 0.93 42.96 29.54 68.60 2.03 44.98 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.05 1.68 8.03 -2.39 -0.02 1.66 16 29 H 0.08 3.78 4.31 -2.39 -0.01 3.77 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 2.00 5.41 -2.38 -0.01 1.99 16 35 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.05 2.13 7.91 -2.39 -0.02 2.11 16 38 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -63.52 306.67 5.95 -57.57 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.02 Total: 14.41 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 4.62 Total: -37.18 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -1.72 Total: -79.78 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -63.52 5.95 -57.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.812 kcal (2) G-P(sol) polarization free energy of solvation -63.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds