Wall clock time and date at job start Mon Mar 30 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34852 * 126.65589 * 2 1 4 4 C 1.50698 * 125.96699 * 0.04018 * 3 2 1 5 5 C 1.52999 * 109.47173 * 119.97600 * 4 3 2 6 6 C 1.52996 * 109.47359 * 239.97733 * 4 3 2 7 7 N 1.34295 * 108.07042 * 180.02562 * 3 2 1 8 8 C 1.30090 * 109.21332 * 0.02562 * 7 3 2 9 9 N 1.35423 * 108.62678 * 359.95347 * 8 7 3 10 10 C 1.46474 * 124.82001 * 180.02562 * 9 8 7 11 11 C 1.53253 * 108.80171 * 17.10001 * 10 9 8 12 12 H 1.09002 * 109.46728 * 69.65764 * 11 10 9 13 13 C 1.50703 * 109.46325 * 189.63646 * 11 10 9 14 14 H 1.07999 * 119.99677 * 35.28285 * 13 11 10 15 15 C 1.37880 * 119.99948 * 215.54905 * 13 11 10 16 16 N 1.31510 * 119.99888 * 185.74950 * 15 13 11 17 17 Si 1.86801 * 120.00061 * 5.75185 * 15 13 11 18 18 H 1.48492 * 109.47013 * 86.41984 * 17 15 13 19 19 H 1.48500 * 109.46830 * 206.42276 * 17 15 13 20 20 H 1.48504 * 109.46971 * 326.42012 * 17 15 13 21 21 C 1.53143 * 109.50760 * 309.64873 * 11 10 9 22 22 C 1.51043 * 127.38774 * 179.89480 * 8 7 3 23 23 H 1.09002 * 109.47618 * 269.96307 * 1 2 3 24 24 H 1.09001 * 109.47084 * 29.96211 * 1 2 3 25 25 H 1.09001 * 109.46839 * 149.95766 * 1 2 3 26 26 H 1.09004 * 109.46641 * 359.97438 * 4 3 2 27 27 H 1.08991 * 109.47321 * 60.00301 * 5 4 3 28 28 H 1.09001 * 109.47140 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47334 * 300.00020 * 5 4 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 6 4 3 31 31 H 1.08995 * 109.47481 * 299.99870 * 6 4 3 32 32 H 1.09002 * 109.47373 * 59.99778 * 6 4 3 33 33 H 1.08999 * 109.57989 * 257.30059 * 10 9 8 34 34 H 1.09008 * 109.69328 * 136.96197 * 10 9 8 35 35 H 0.96997 * 120.00106 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.51460 * 189.41220 * 21 11 10 37 37 H 1.09008 * 109.50820 * 309.55592 * 21 11 10 38 38 H 1.08998 * 109.71361 * 315.72625 * 22 8 7 39 39 H 1.08998 * 109.72029 * 76.33350 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3121 1.0818 0.0000 4 6 1.8620 2.5200 0.0009 5 6 2.3982 3.2215 1.2504 6 6 2.3977 3.2229 -1.2481 7 7 3.5850 0.6538 -0.0006 8 6 3.5992 -0.6470 -0.0015 9 7 2.3208 -1.0936 -0.0005 10 6 1.9277 -2.5046 -0.0005 11 6 3.1313 -3.3526 0.4248 12 1 3.3413 -3.1816 1.4807 13 6 2.8212 -4.8108 0.2044 14 1 2.2188 -5.1132 -0.6395 15 6 3.3019 -5.7584 1.0831 16 7 3.1283 -7.0373 0.8307 17 14 4.1998 -5.2255 2.6321 18 1 3.2140 -4.9728 3.7134 19 1 5.1353 -6.2982 3.0557 20 1 4.9639 -3.9819 2.3583 21 6 4.3542 -2.9592 -0.4089 22 6 4.8093 -1.5509 -0.0046 23 1 -0.3634 -0.0007 1.0276 24 1 -0.3633 0.8903 -0.5132 25 1 -0.3633 -0.8896 -0.5145 26 1 0.7727 2.5598 0.0010 27 1 3.4874 3.1817 1.2502 28 1 2.0723 4.2616 1.2512 29 1 2.0165 2.7208 2.1402 30 1 2.0718 4.2630 -1.2477 31 1 3.4870 3.1831 -1.2483 32 1 2.0158 2.7232 -2.1383 33 1 1.6113 -2.7957 -1.0021 34 1 1.1071 -2.6574 0.7006 35 1 3.4668 -7.7039 1.4487 36 1 5.1617 -3.6686 -0.2279 37 1 4.0916 -2.9676 -1.4668 38 1 5.5421 -1.1819 -0.7221 39 1 5.2511 -1.5775 0.9915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261088764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:06 Heat of formation + Delta-G solvation = 23.929405 kcal Electronic energy + Delta-G solvation = -18563.228068 eV Core-core repulsion = 15891.274378 eV Total energy + Delta-G solvation = -2671.953690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89678 -36.74702 -34.74778 -33.14874 -32.42501 -30.25610 -29.25957 -26.94631 -25.94548 -25.04441 -22.97919 -21.58042 -20.57714 -18.90246 -18.23517 -17.14466 -15.67171 -15.36014 -14.77399 -14.52513 -13.95293 -13.68779 -13.54536 -13.19440 -12.95821 -12.83332 -12.69117 -12.50235 -12.21435 -12.00819 -11.77451 -11.38688 -11.15935 -11.05590 -10.92282 -10.65659 -10.63789 -10.32069 -9.90850 -9.86872 -9.43892 -9.24368 -8.84498 -8.71272 -7.56249 -6.27855 -4.30774 2.51575 3.16324 3.26634 3.28074 3.40729 3.51990 4.25099 4.73605 4.98588 5.04562 5.19356 5.20868 5.38785 5.40292 5.51373 5.58633 5.64956 5.72981 5.78687 5.83662 5.93722 5.96024 5.97340 6.05129 6.10650 6.13842 6.17480 6.33099 6.43483 6.50514 6.57930 6.61753 6.94248 7.04606 7.13546 7.28088 7.44103 7.80584 8.26529 8.64282 8.74547 9.33172 10.84329 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.006021 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.811531 B = 4649.154345 C = 4841.831281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.035 4.035 3 C -0.005 4.005 4 C -0.004 4.004 5 C -0.137 4.137 6 C -0.137 4.137 7 N -0.493 5.493 8 C 0.215 3.785 9 N -0.443 5.443 10 C 0.112 3.888 11 C 0.007 3.993 12 H 0.042 0.958 13 C -0.520 4.520 14 H 0.077 0.923 15 C 0.079 3.921 16 N -0.890 5.890 17 Si 0.874 3.126 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.261 1.261 21 C -0.117 4.117 22 C -0.039 4.039 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.267 0.733 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 14.944 -0.874 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.151 4.151 3 C -0.135 4.135 4 C -0.024 4.024 5 C -0.195 4.195 6 C -0.195 4.195 7 N -0.212 5.212 8 C -0.047 4.047 9 N -0.124 5.124 10 C -0.009 4.009 11 C -0.012 4.012 12 H 0.060 0.940 13 C -0.558 4.558 14 H 0.095 0.905 15 C -0.125 4.125 16 N -0.527 5.527 17 Si 0.700 3.300 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.186 1.186 21 C -0.155 4.155 22 C -0.078 4.078 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.033 15.058 -0.809 15.216 hybrid contribution -0.301 -0.553 0.869 1.073 sum -2.333 14.505 0.060 14.692 Atomic orbital electron populations 1.20134 0.87981 1.02721 1.02180 1.20808 0.94158 0.86960 1.13166 1.20273 0.88926 0.94280 1.10046 1.19316 0.98884 0.88561 0.95613 1.21735 1.01948 0.98796 0.96975 1.21741 1.01968 0.98792 0.96968 1.69818 1.21724 1.08280 1.21391 1.23218 0.86364 0.90182 1.04946 1.45629 1.06609 1.07651 1.52503 1.22393 1.00927 0.75104 1.02475 1.19467 0.89874 0.95733 0.96144 0.93996 1.20737 1.34713 0.87487 1.12814 0.90484 1.25012 0.95000 0.94706 0.97737 1.69883 1.45685 1.00168 1.36923 0.86900 0.80400 0.78826 0.83829 1.20102 1.21177 1.18597 1.22033 1.00193 0.92806 1.00482 1.20345 0.91408 0.93425 1.02606 0.91478 0.90639 0.91797 0.90884 0.92092 0.93131 0.93196 0.93142 0.92083 0.93199 0.90468 0.90209 0.92264 0.90833 0.92360 0.90036 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 9.85 36.01 0.35 -0.58 16 2 C -0.03 -0.59 6.98 -81.80 -0.57 -1.16 16 3 C -0.01 -0.09 5.61 -82.72 -0.46 -0.55 16 4 C 0.00 -0.06 3.28 -91.78 -0.30 -0.36 16 5 C -0.14 -1.72 9.18 37.16 0.34 -1.38 16 6 C -0.14 -1.69 9.18 37.16 0.34 -1.35 16 7 N -0.49 -9.53 11.24 -6.88 -0.08 -9.61 16 8 C 0.22 4.21 7.65 -155.24 -1.19 3.03 16 9 N -0.44 -8.42 3.13 -109.19 -0.34 -8.76 16 10 C 0.11 2.17 5.97 -3.92 -0.02 2.15 16 11 C 0.01 0.16 1.80 -91.57 -0.16 -0.01 16 12 H 0.04 0.95 5.16 -51.93 -0.27 0.69 16 13 C -0.52 -13.37 8.83 -34.44 -0.30 -13.67 16 14 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 15 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 16 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 17 Si 0.87 20.34 27.07 -169.99 -4.60 15.74 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.26 -5.81 6.71 56.52 0.38 -5.43 16 21 C -0.12 -2.31 5.24 -26.44 -0.14 -2.45 16 22 C -0.04 -0.70 6.33 -27.50 -0.17 -0.88 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.81 7.18 -51.93 -0.37 0.44 16 25 H 0.06 0.80 8.03 -51.93 -0.42 0.39 16 26 H 0.07 0.85 6.82 -51.93 -0.35 0.50 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 34 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 1.48 8.12 -51.93 -0.42 1.06 16 37 H 0.06 1.13 8.12 -51.92 -0.42 0.71 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -29.05 310.99 -8.43 -37.48 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.48 Total: 0.49 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.39 Total: -15.18 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.35 Total: -43.22 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.60 Total: 15.74 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.05 -8.43 -37.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.411 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds