Wall clock time and date at job start Mon Mar 30 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34852 * 126.65589 * 2 1 4 4 C 1.50698 * 125.96699 * 0.04018 * 3 2 1 5 5 C 1.52999 * 109.47173 * 119.97600 * 4 3 2 6 6 C 1.52996 * 109.47359 * 239.97733 * 4 3 2 7 7 N 1.34295 * 108.07042 * 180.02562 * 3 2 1 8 8 C 1.30090 * 109.21332 * 0.02562 * 7 3 2 9 9 N 1.35423 * 108.62678 * 359.95347 * 8 7 3 10 10 C 1.46474 * 124.82001 * 180.02562 * 9 8 7 11 11 C 1.53253 * 108.80171 * 17.10001 * 10 9 8 12 12 H 1.09002 * 109.46728 * 69.65764 * 11 10 9 13 13 C 1.50703 * 109.46325 * 189.63646 * 11 10 9 14 14 H 1.07999 * 119.99677 * 35.28285 * 13 11 10 15 15 C 1.37880 * 119.99948 * 215.54905 * 13 11 10 16 16 N 1.31510 * 119.99888 * 185.74950 * 15 13 11 17 17 Si 1.86801 * 120.00061 * 5.75185 * 15 13 11 18 18 H 1.48492 * 109.47013 * 86.41984 * 17 15 13 19 19 H 1.48500 * 109.46830 * 206.42276 * 17 15 13 20 20 H 1.48504 * 109.46971 * 326.42012 * 17 15 13 21 21 C 1.53143 * 109.50760 * 309.64873 * 11 10 9 22 22 C 1.51043 * 127.38774 * 179.89480 * 8 7 3 23 23 H 1.09002 * 109.47618 * 269.96307 * 1 2 3 24 24 H 1.09001 * 109.47084 * 29.96211 * 1 2 3 25 25 H 1.09001 * 109.46839 * 149.95766 * 1 2 3 26 26 H 1.09004 * 109.46641 * 359.97438 * 4 3 2 27 27 H 1.08991 * 109.47321 * 60.00301 * 5 4 3 28 28 H 1.09001 * 109.47140 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47334 * 300.00020 * 5 4 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 6 4 3 31 31 H 1.08995 * 109.47481 * 299.99870 * 6 4 3 32 32 H 1.09002 * 109.47373 * 59.99778 * 6 4 3 33 33 H 1.08999 * 109.57989 * 257.30059 * 10 9 8 34 34 H 1.09008 * 109.69328 * 136.96197 * 10 9 8 35 35 H 0.96997 * 120.00106 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.51460 * 189.41220 * 21 11 10 37 37 H 1.09008 * 109.50820 * 309.55592 * 21 11 10 38 38 H 1.08998 * 109.71361 * 315.72625 * 22 8 7 39 39 H 1.08998 * 109.72029 * 76.33350 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3121 1.0818 0.0000 4 6 1.8620 2.5200 0.0009 5 6 2.3982 3.2215 1.2504 6 6 2.3977 3.2229 -1.2481 7 7 3.5850 0.6538 -0.0006 8 6 3.5992 -0.6470 -0.0015 9 7 2.3208 -1.0936 -0.0005 10 6 1.9277 -2.5046 -0.0005 11 6 3.1313 -3.3526 0.4248 12 1 3.3413 -3.1816 1.4807 13 6 2.8212 -4.8108 0.2044 14 1 2.2188 -5.1132 -0.6395 15 6 3.3019 -5.7584 1.0831 16 7 3.1283 -7.0373 0.8307 17 14 4.1998 -5.2255 2.6321 18 1 3.2140 -4.9728 3.7134 19 1 5.1353 -6.2982 3.0557 20 1 4.9639 -3.9819 2.3583 21 6 4.3542 -2.9592 -0.4089 22 6 4.8093 -1.5509 -0.0046 23 1 -0.3634 -0.0007 1.0276 24 1 -0.3633 0.8903 -0.5132 25 1 -0.3633 -0.8896 -0.5145 26 1 0.7727 2.5598 0.0010 27 1 3.4874 3.1817 1.2502 28 1 2.0723 4.2616 1.2512 29 1 2.0165 2.7208 2.1402 30 1 2.0718 4.2630 -1.2477 31 1 3.4870 3.1831 -1.2483 32 1 2.0158 2.7232 -2.1383 33 1 1.6113 -2.7957 -1.0021 34 1 1.1071 -2.6574 0.7006 35 1 3.4668 -7.7039 1.4487 36 1 5.1617 -3.6686 -0.2279 37 1 4.0916 -2.9676 -1.4668 38 1 5.5421 -1.1819 -0.7221 39 1 5.2511 -1.5775 0.9915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261088764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:05 Heat of formation + Delta-G solvation = 8.834110 kcal Electronic energy + Delta-G solvation = -18563.882649 eV Core-core repulsion = 15891.274378 eV Total energy + Delta-G solvation = -2672.608271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.27833 -38.24978 -36.01032 -34.52307 -34.35016 -31.50556 -30.90477 -27.90297 -27.28419 -26.75333 -24.44001 -22.98486 -22.06242 -20.19281 -19.79089 -19.05022 -17.06812 -16.85135 -16.33846 -15.92693 -15.38646 -15.10087 -14.91092 -14.66733 -14.51194 -14.01538 -13.95661 -13.73476 -13.46850 -13.20389 -13.08520 -12.90324 -12.80705 -12.35518 -12.18538 -11.99102 -11.92392 -11.76646 -11.65812 -11.55006 -11.23093 -10.77641 -10.70510 -10.28511 -8.87679 -8.35522 -6.41709 1.15680 1.31731 1.36183 1.44649 1.98506 2.15688 2.29548 2.99924 3.42887 3.77389 3.86344 3.98072 4.13100 4.14858 4.22446 4.38782 4.40964 4.43982 4.53582 4.64673 4.70643 4.78085 4.83442 4.89401 4.91378 4.99379 5.02876 5.07030 5.16517 5.22023 5.28096 5.42189 5.46245 5.51373 5.56368 5.67974 6.00059 6.18224 6.36940 6.65863 7.24508 7.26624 8.80213 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.006021 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.811531 B = 4649.154345 C = 4841.831281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.042 4.042 3 C -0.016 4.016 4 C -0.007 4.007 5 C -0.132 4.132 6 C -0.132 4.132 7 N -0.508 5.508 8 C 0.189 3.811 9 N -0.452 5.452 10 C 0.122 3.878 11 C 0.008 3.992 12 H 0.037 0.963 13 C -0.516 4.516 14 H 0.043 0.957 15 C 0.027 3.973 16 N -0.939 5.939 17 Si 0.931 3.069 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.244 1.244 21 C -0.110 4.110 22 C -0.031 4.031 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.269 0.731 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 17.517 -0.291 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.158 4.158 3 C -0.146 4.146 4 C -0.026 4.026 5 C -0.190 4.190 6 C -0.189 4.189 7 N -0.228 5.228 8 C -0.073 4.073 9 N -0.134 5.134 10 C 0.001 3.999 11 C -0.012 4.012 12 H 0.055 0.945 13 C -0.554 4.554 14 H 0.062 0.938 15 C -0.172 4.172 16 N -0.577 5.577 17 Si 0.755 3.245 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.167 1.167 21 C -0.149 4.149 22 C -0.070 4.070 23 H 0.098 0.902 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.517 17.666 -0.234 17.845 hybrid contribution -0.215 -1.304 0.606 1.454 sum -2.732 16.362 0.372 16.593 Atomic orbital electron populations 1.20287 0.85165 1.04066 1.03369 1.21541 0.95995 0.86193 1.12045 1.20948 0.88159 0.96169 1.09314 1.19516 1.00303 0.86430 0.96342 1.21690 1.00601 1.00380 0.96286 1.21693 1.00628 1.00357 0.96264 1.69818 1.23184 1.08190 1.21580 1.23473 0.86870 0.90673 1.06325 1.45631 1.06990 1.07581 1.53156 1.22082 0.99787 0.75557 1.02483 1.19381 0.91803 0.93692 0.96293 0.94461 1.20919 1.33340 0.89790 1.11333 0.93840 1.25759 0.96084 0.94536 1.00808 1.70011 1.47821 1.01478 1.38437 0.85970 0.79446 0.79020 0.80031 1.19682 1.21170 1.16735 1.21860 0.99013 0.94066 0.99939 1.20279 0.91547 0.91838 1.03298 0.90243 0.88075 0.91710 0.88503 0.94045 0.90316 0.93799 0.90350 0.94030 0.93644 0.90596 0.89594 0.92224 0.91354 0.92550 0.88179 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 9.85 71.24 0.70 -0.93 16 2 C -0.04 -1.36 6.98 41.08 0.29 -1.07 16 3 C -0.02 -0.53 5.61 41.40 0.23 -0.30 16 4 C -0.01 -0.16 3.28 -11.54 -0.04 -0.19 16 5 C -0.13 -2.95 9.18 71.98 0.66 -2.29 16 6 C -0.13 -2.90 9.18 71.98 0.66 -2.24 16 7 N -0.51 -18.97 11.24 -175.69 -1.98 -20.94 16 8 C 0.19 7.14 7.65 138.23 1.06 8.19 16 9 N -0.45 -16.57 3.13 -499.37 -1.57 -18.14 16 10 C 0.12 4.66 5.97 86.47 0.52 5.18 16 11 C 0.01 0.33 1.80 -11.41 -0.02 0.31 16 12 H 0.04 1.65 5.16 -2.39 -0.01 1.64 16 13 C -0.52 -26.98 8.83 25.60 0.23 -26.75 16 14 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 15 C 0.03 1.48 5.47 84.66 0.46 1.94 16 16 N -0.94 -55.35 13.96 21.45 0.30 -55.05 16 17 Si 0.93 41.75 27.07 68.60 1.86 43.61 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.24 -10.14 6.71 99.48 0.67 -9.47 16 21 C -0.11 -4.29 5.24 30.78 0.16 -4.13 16 22 C -0.03 -1.07 6.33 30.10 0.19 -0.88 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 24 H 0.10 1.78 7.18 -2.39 -0.02 1.76 16 25 H 0.06 1.47 8.03 -2.39 -0.02 1.46 16 26 H 0.10 1.85 6.82 -2.38 -0.02 1.83 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16 34 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 35 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.07 2.71 8.12 -2.39 -0.02 2.69 16 37 H 0.06 2.18 8.12 -2.38 -0.02 2.16 16 38 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -62.92 310.99 4.68 -58.24 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.97 Total: 15.45 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 5.10 Total: -23.17 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -3.24 Total: -94.13 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.86 Total: 43.61 kcal Total: -62.92 4.68 -58.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.076 kcal (2) G-P(sol) polarization free energy of solvation -62.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds