Wall clock time and date at job start Mon Mar 30 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47397 * 2 1 4 4 C 1.53004 * 109.46970 * 240.00071 * 2 1 3 5 5 C 1.50699 * 109.47251 * 120.00421 * 2 1 3 6 6 N 1.30787 * 125.72494 * 234.04441 * 5 2 1 7 7 C 1.34424 * 109.32359 * 179.97438 * 6 5 2 8 8 C 1.33794 * 107.82129 * 0.03890 * 7 6 5 9 9 N 1.34409 * 125.72585 * 54.08457 * 5 2 1 10 10 C 1.46471 * 128.44298 * 0.12857 * 9 5 2 11 11 C 1.53284 * 108.69244 * 162.65385 * 10 9 5 12 12 C 1.53124 * 109.70858 * 50.77284 * 11 10 9 13 13 H 1.09001 * 109.49542 * 50.03841 * 12 11 10 14 14 C 1.50690 * 109.49983 * 170.14193 * 12 11 10 15 15 H 1.07999 * 120.00370 * 359.83242 * 14 12 11 16 16 C 1.37878 * 120.00073 * 179.83271 * 14 12 11 17 17 N 1.31520 * 119.99821 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00298 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47036 * 89.99899 * 18 16 14 20 20 H 1.48492 * 109.47144 * 210.00088 * 18 16 14 21 21 H 1.48500 * 109.46946 * 329.99959 * 18 16 14 22 22 C 1.50707 * 128.73499 * 180.13380 * 8 7 6 23 23 H 1.08997 * 109.46791 * 299.99828 * 1 2 3 24 24 H 1.08998 * 109.47380 * 59.99721 * 1 2 3 25 25 H 1.09001 * 109.47424 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46916 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47083 * 300.00460 * 3 2 1 28 28 H 1.08997 * 109.47009 * 60.00306 * 3 2 1 29 29 H 1.09001 * 109.47316 * 305.41627 * 4 2 1 30 30 H 1.08999 * 109.47134 * 65.42027 * 4 2 1 31 31 H 1.09002 * 109.47336 * 185.41361 * 4 2 1 32 32 H 1.08006 * 126.09830 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.59895 * 42.89682 * 10 9 5 34 34 H 1.08994 * 109.73290 * 282.49715 * 10 9 5 35 35 H 1.09000 * 109.43823 * 290.69742 * 11 10 9 36 36 H 1.09001 * 109.39271 * 170.81614 * 11 10 9 37 37 H 0.96996 * 119.99821 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.74661 * 44.51239 * 22 8 7 39 39 H 1.08999 * 109.74589 * 283.84100 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 7 2.8746 -0.2223 2.1037 7 6 3.0940 -1.1333 3.0675 8 6 2.3650 -2.2176 2.7796 9 7 1.6905 -1.9525 1.6140 10 6 0.7799 -2.8912 0.9544 11 6 1.0396 -4.2974 1.5063 12 6 1.0185 -4.2634 3.0370 13 1 0.1175 -3.7528 3.3771 14 6 1.0313 -5.6723 3.5716 15 1 1.0496 -6.5088 2.8888 16 6 1.0195 -5.8933 4.9325 17 7 0.9967 -4.8746 5.7640 18 14 1.0361 -7.6397 5.5953 19 1 2.4404 -8.0834 5.7861 20 1 0.3225 -7.6820 6.8968 21 1 0.3587 -8.5420 4.6298 22 6 2.2565 -3.5114 3.5449 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.5996 -1.7171 -1.2991 30 1 1.7580 -0.1544 -2.1366 31 1 3.1256 -0.8060 -1.2022 32 1 3.7432 -1.0118 3.9221 33 1 0.9603 -2.8812 -0.1206 34 1 -0.2524 -2.6046 1.1545 35 1 2.0139 -4.6470 1.1647 36 1 0.2650 -4.9755 1.1480 37 1 0.9888 -5.0301 6.7214 38 1 2.1489 -3.3019 4.6091 39 1 3.1486 -4.1146 3.3768 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261090685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:16 Heat of formation + Delta-G solvation = 17.889704 kcal Electronic energy + Delta-G solvation = -18842.518916 eV Core-core repulsion = 16170.303325 eV Total energy + Delta-G solvation = -2672.215591 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.28978 -38.04957 -37.38291 -34.97484 -32.89665 -31.18576 -28.89985 -28.19654 -28.10316 -26.64572 -24.67563 -23.09236 -22.18107 -20.26309 -19.60948 -18.38267 -17.36113 -16.77922 -16.41029 -15.62261 -15.31329 -15.05082 -14.91002 -14.68851 -14.45994 -14.33796 -13.78926 -13.40677 -13.10893 -12.92909 -12.88084 -12.76693 -12.53165 -12.50344 -12.38848 -12.13451 -11.85367 -11.80199 -11.67046 -11.21809 -10.99869 -10.73716 -10.49965 -10.29192 -9.02953 -8.12957 -6.27287 1.24608 1.42252 1.43670 1.52936 1.99952 2.21882 2.41954 3.15736 3.36870 3.77874 3.82599 3.94901 4.04782 4.14240 4.23277 4.32216 4.48137 4.63604 4.69924 4.74433 4.78902 4.87252 4.92190 4.93861 5.01552 5.01815 5.04793 5.09304 5.21683 5.26710 5.40379 5.49171 5.54202 5.69531 5.73868 5.90339 5.99943 6.26144 6.49685 6.83609 7.22124 7.42276 8.92838 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.042419 B = 0.005863 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.923458 B = 4774.430474 C = 5120.688816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.018 3.982 3 C -0.119 4.119 4 C -0.139 4.139 5 C 0.205 3.795 6 N -0.519 5.519 7 C -0.066 4.066 8 C -0.016 4.016 9 N -0.448 5.448 10 C 0.103 3.897 11 C -0.117 4.117 12 C 0.046 3.954 13 H -0.005 1.005 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.015 3.985 17 N -0.918 5.918 18 Si 0.956 3.044 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.025 4.025 23 H 0.043 0.957 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.167 0.833 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 7.118 -13.863 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.176 4.176 4 C -0.197 4.197 5 C -0.058 4.058 6 N -0.239 5.239 7 C -0.212 4.212 8 C -0.131 4.131 9 N -0.130 5.130 10 C -0.018 4.018 11 C -0.155 4.155 12 C 0.027 3.973 13 H 0.014 0.986 14 C -0.572 4.572 15 H 0.079 0.921 16 C -0.184 4.184 17 N -0.557 5.557 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.064 4.064 23 H 0.062 0.938 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.184 0.816 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.847 7.837 -13.785 15.880 hybrid contribution -0.107 -1.751 1.433 2.265 sum -0.954 6.087 -12.352 13.803 Atomic orbital electron populations 1.22019 0.92311 1.02777 1.03205 1.19188 0.96196 0.95451 0.87564 1.21602 1.01079 0.92722 1.02225 1.21950 1.00803 1.00656 0.96265 1.23665 0.98539 0.83796 0.99768 1.70296 1.18032 1.31052 1.04493 1.21899 1.06116 0.91479 1.01671 1.21826 1.00043 1.00267 0.90994 1.45308 1.34776 1.13661 1.19291 1.22330 0.92801 0.88498 0.98146 1.21877 1.02201 0.94257 0.97124 1.18677 0.92659 0.94868 0.91106 0.98649 1.21478 1.51076 0.92661 0.91989 0.92101 1.25766 0.94539 1.00611 0.97513 1.70036 1.50923 1.31810 1.02906 0.85590 0.78171 0.80436 0.77672 1.20249 1.21245 1.18943 1.20141 0.99054 0.88499 0.98712 0.93770 0.88395 0.92252 0.93133 0.89314 0.93712 0.92195 0.88490 0.93513 0.81610 0.86738 0.89639 0.92458 0.89356 0.92937 0.90817 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.31 71.98 0.60 -2.41 16 2 C 0.02 0.44 0.81 -52.93 -0.04 0.40 16 3 C -0.12 -2.69 7.96 71.98 0.57 -2.11 16 4 C -0.14 -2.72 8.37 71.98 0.60 -2.12 16 5 C 0.21 7.18 6.25 138.25 0.86 8.04 16 6 N -0.52 -20.99 10.55 -188.82 -1.99 -22.99 16 7 C -0.07 -2.83 11.83 83.29 0.99 -1.84 16 8 C -0.02 -0.70 6.57 40.70 0.27 -0.44 16 9 N -0.45 -16.72 3.13 -500.14 -1.57 -18.28 16 10 C 0.10 3.23 5.18 86.48 0.45 3.68 16 11 C -0.12 -4.37 5.16 30.73 0.16 -4.21 16 12 C 0.05 2.21 2.12 -11.33 -0.02 2.19 16 13 H 0.00 -0.25 8.12 -2.39 -0.02 -0.27 16 14 C -0.53 -28.16 8.52 25.60 0.22 -27.94 16 15 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 16 C 0.01 0.81 5.30 84.65 0.45 1.25 16 17 N -0.92 -52.41 11.49 21.45 0.25 -52.16 16 18 Si 0.96 42.47 29.54 68.60 2.03 44.49 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 C -0.03 -1.23 5.18 30.02 0.16 -1.07 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.22 5.51 -2.39 -0.01 1.20 16 26 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.12 5.81 -2.39 -0.01 1.11 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.17 6.61 8.06 -2.91 -0.02 6.58 16 33 H 0.11 2.74 5.77 -2.39 -0.01 2.72 16 34 H 0.09 2.54 7.22 -2.39 -0.02 2.52 16 35 H 0.06 2.15 8.11 -2.39 -0.02 2.13 16 36 H 0.09 3.01 8.11 -2.39 -0.02 2.99 16 37 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.07 4.04 6.51 -2.39 -0.02 4.02 16 39 H 0.05 2.38 8.11 -2.39 -0.02 2.36 16 Total: -1.00 -64.04 301.99 4.98 -59.06 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 1.02 Total: 16.46 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 5.25 Total: -26.58 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -3.31 Total: -93.44 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -64.04 4.98 -59.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.948 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds