Wall clock time and date at job start Mon Mar 30 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47114 * 2 1 4 4 C 1.53000 * 109.46598 * 240.00022 * 2 1 3 5 5 C 1.50699 * 109.47204 * 120.00317 * 2 1 3 6 6 C 1.34854 * 125.96659 * 75.00314 * 5 2 1 7 7 N 1.36317 * 106.68829 * 180.25403 * 6 5 2 8 8 C 1.35418 * 107.39746 * 359.55716 * 7 6 5 9 9 N 1.30097 * 108.63175 * 0.46982 * 8 7 6 10 10 C 1.51040 * 123.98123 * 180.24512 * 8 7 6 11 11 C 1.53398 * 108.21160 * 16.19770 * 10 8 7 12 12 H 1.09001 * 109.51204 * 71.10298 * 11 10 8 13 13 C 1.50698 * 109.51083 * 191.25009 * 11 10 8 14 14 H 1.08003 * 120.00189 * 119.99876 * 13 11 10 15 15 C 1.37884 * 120.00143 * 299.99454 * 13 11 10 16 16 N 1.31512 * 119.99962 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 119.99671 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47468 * 89.99542 * 17 15 13 19 19 H 1.48504 * 109.46878 * 209.99960 * 17 15 13 20 20 H 1.48502 * 109.47039 * 329.99661 * 17 15 13 21 21 C 1.53150 * 109.23465 * 311.17527 * 11 10 8 22 22 C 1.46469 * 127.77273 * 180.21087 * 7 6 5 23 23 H 1.09003 * 109.46788 * 299.99341 * 1 2 3 24 24 H 1.08999 * 109.47742 * 59.99668 * 1 2 3 25 25 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46785 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47087 * 300.00733 * 3 2 1 28 28 H 1.09001 * 109.47105 * 60.00230 * 3 2 1 29 29 H 1.08994 * 109.47463 * 299.99675 * 4 2 1 30 30 H 1.08999 * 109.47191 * 60.00141 * 4 2 1 31 31 H 1.09004 * 109.46881 * 179.97438 * 4 2 1 32 32 H 1.08002 * 126.65146 * 359.97438 * 6 5 2 33 33 H 1.09002 * 109.71618 * 135.87168 * 10 8 7 34 34 H 1.08993 * 109.71978 * 256.46983 * 10 8 7 35 35 H 0.96997 * 119.99382 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.46706 * 189.50099 * 21 11 10 37 37 H 1.09005 * 109.47101 * 309.49013 * 21 11 10 38 38 H 1.08998 * 109.78196 * 76.94044 * 22 7 6 39 39 H 1.08990 * 109.56269 * 316.55093 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 2.0301 -2.0439 1.4314 7 7 2.5635 -2.2543 2.6681 8 6 2.8850 -1.0433 3.1818 9 7 2.5605 -0.1260 2.3181 10 6 3.5107 -0.8422 4.5417 11 6 4.0694 -2.1896 5.0163 12 1 4.9483 -2.4478 4.4254 13 6 4.4507 -2.0921 6.4710 14 1 3.9802 -2.7386 7.1971 15 6 5.4002 -1.1776 6.8751 16 7 5.7325 -1.0922 8.1447 17 14 6.2135 -0.0591 5.6194 18 1 5.4245 1.1919 5.4863 19 1 7.5906 0.2694 6.0676 20 1 6.2719 -0.7495 4.3059 21 6 2.9987 -3.2703 4.8395 22 6 2.7807 -3.5346 3.3456 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6765 -0.2074 -2.1392 31 1 3.1299 -0.7209 -1.2496 32 1 1.6707 -2.7984 0.7473 33 1 4.3184 -0.1137 4.4707 34 1 2.7568 -0.4878 5.2446 35 1 6.4007 -0.4492 8.4288 36 1 3.3256 -4.1887 5.3270 37 1 2.0646 -2.9331 5.2888 38 1 3.6594 -4.0276 2.9298 39 1 1.9065 -4.1715 3.2111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261106922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:28 Heat of formation + Delta-G solvation = 38.072883 kcal Electronic energy + Delta-G solvation = -18610.986505 eV Core-core repulsion = 15939.646122 eV Total energy + Delta-G solvation = -2671.340383 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.90468 -37.28403 -35.56455 -33.28361 -31.79771 -28.93433 -28.46772 -27.16571 -26.95670 -24.91466 -23.40792 -21.74943 -20.54458 -18.43296 -18.31880 -16.88080 -16.39691 -15.38004 -14.86033 -14.45448 -14.05093 -13.87011 -13.48377 -13.40651 -13.25810 -12.87715 -12.58607 -12.27015 -12.15441 -11.95628 -11.54452 -11.32415 -11.09631 -10.92130 -10.77133 -10.75872 -10.38784 -10.33336 -9.98635 -9.61517 -9.30524 -9.24530 -9.00466 -8.64451 -7.70410 -6.17669 -4.19632 2.50458 3.24282 3.29470 3.37229 3.38660 3.56618 4.33606 4.65969 4.91716 5.08613 5.13229 5.17564 5.21333 5.27716 5.32085 5.50795 5.62734 5.65716 5.70816 5.84602 5.85984 5.98123 6.04512 6.05446 6.09013 6.18842 6.28212 6.36805 6.45206 6.45771 6.57860 6.60882 6.85293 6.94433 7.20988 7.27504 7.57004 7.72980 8.38005 8.65856 8.84622 9.43594 10.94876 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031065 B = 0.006613 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.113803 B = 4232.907310 C = 4795.111189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.018 3.982 3 C -0.127 4.127 4 C -0.135 4.135 5 C 0.005 3.995 6 C -0.068 4.068 7 N -0.452 5.452 8 C 0.230 3.770 9 N -0.496 5.496 10 C -0.043 4.043 11 C 0.013 3.987 12 H 0.033 0.967 13 C -0.518 4.518 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.894 5.894 17 Si 0.876 3.124 18 H -0.272 1.272 19 H -0.293 1.293 20 H -0.266 1.266 21 C -0.115 4.115 22 C 0.101 3.899 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.164 0.836 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.266 0.734 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 -1.910 -15.622 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.017 3.983 3 C -0.184 4.184 4 C -0.193 4.193 5 C -0.125 4.125 6 C -0.202 4.202 7 N -0.134 5.134 8 C -0.033 4.033 9 N -0.215 5.215 10 C -0.082 4.082 11 C -0.006 4.006 12 H 0.051 0.949 13 C -0.556 4.556 14 H 0.096 0.904 15 C -0.127 4.127 16 N -0.531 5.531 17 Si 0.706 3.294 18 H -0.198 1.198 19 H -0.220 1.220 20 H -0.191 1.191 21 C -0.153 4.153 22 C -0.021 4.021 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.181 0.819 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.885 -1.148 -15.295 17.246 hybrid contribution 0.386 -0.309 -0.722 0.876 sum -7.498 -1.457 -16.017 17.746 Atomic orbital electron populations 1.21847 0.94271 1.01509 1.01501 1.18760 0.94615 0.94978 0.89972 1.21657 1.01194 0.94505 1.01075 1.21866 1.01226 0.99886 0.96347 1.20476 1.05741 0.90160 0.96093 1.22046 1.10288 0.98289 0.89529 1.45417 1.45773 1.08410 1.13796 1.23920 1.01308 0.79694 0.98361 1.69977 1.17964 1.31802 1.01736 1.20983 0.99329 1.01587 0.86267 1.19276 0.93587 0.89373 0.98409 0.94928 1.20893 1.22862 1.21318 0.90521 0.90357 1.24987 0.95998 0.96714 0.94988 1.69877 1.32220 1.36132 1.14910 0.87012 0.78579 0.81845 0.81988 1.19790 1.22021 1.19079 1.21858 1.01057 1.01658 0.90716 1.22126 1.01668 0.82915 0.95386 0.92582 0.92680 0.92922 0.92753 0.93470 0.91957 0.92824 0.92548 0.92657 0.81911 0.90865 0.89261 0.92393 0.89750 0.91535 0.90387 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.46 37.16 0.31 -1.25 16 2 C 0.02 0.24 0.95 -155.66 -0.15 0.09 16 3 C -0.13 -1.74 8.04 37.16 0.30 -1.44 16 4 C -0.14 -1.51 8.19 37.16 0.30 -1.21 16 5 C 0.01 0.09 5.53 -82.72 -0.46 -0.37 16 6 C -0.07 -1.09 10.90 -16.76 -0.18 -1.27 16 7 N -0.45 -8.05 3.13 -113.76 -0.36 -8.41 16 8 C 0.23 4.79 7.65 -155.24 -1.19 3.61 16 9 N -0.50 -10.27 10.59 -6.88 -0.07 -10.34 16 10 C -0.04 -0.96 4.88 -27.51 -0.13 -1.09 16 11 C 0.01 0.29 1.71 -91.49 -0.16 0.13 16 12 H 0.03 0.76 7.19 -51.93 -0.37 0.39 16 13 C -0.52 -13.77 9.11 -34.44 -0.31 -14.08 16 14 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16 15 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 16 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 17 Si 0.88 21.68 24.28 -169.99 -4.13 17.55 16 18 H -0.27 -6.65 6.98 56.52 0.39 -6.26 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.27 -6.45 6.50 56.52 0.37 -6.08 16 21 C -0.12 -2.06 5.18 -26.51 -0.14 -2.20 16 22 C 0.10 1.53 6.98 -3.92 -0.03 1.50 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 29 H 0.05 0.54 7.50 -51.93 -0.39 0.15 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.16 2.03 7.67 -52.49 -0.40 1.63 16 33 H 0.07 1.74 3.73 -51.93 -0.19 1.55 16 34 H 0.09 2.00 8.11 -51.93 -0.42 1.58 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 36 H 0.08 1.42 8.12 -51.93 -0.42 0.99 16 37 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -30.45 303.66 -7.57 -38.03 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.44 Total: -0.09 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.92 Total: -15.55 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.34 Total: -44.52 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.13 Total: 17.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.45 -7.57 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261106922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.100 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds