Wall clock time and date at job start Mon Mar 30 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47114 * 2 1 4 4 C 1.53000 * 109.46598 * 240.00022 * 2 1 3 5 5 C 1.50699 * 109.47204 * 120.00317 * 2 1 3 6 6 C 1.34854 * 125.96659 * 75.00314 * 5 2 1 7 7 N 1.36317 * 106.68829 * 180.25403 * 6 5 2 8 8 C 1.35418 * 107.39746 * 359.55716 * 7 6 5 9 9 N 1.30097 * 108.63175 * 0.46982 * 8 7 6 10 10 C 1.51040 * 123.98123 * 180.24512 * 8 7 6 11 11 C 1.53398 * 108.21160 * 16.19770 * 10 8 7 12 12 H 1.09001 * 109.51204 * 71.10298 * 11 10 8 13 13 C 1.50698 * 109.51083 * 191.25009 * 11 10 8 14 14 H 1.08003 * 120.00189 * 119.99876 * 13 11 10 15 15 C 1.37884 * 120.00143 * 299.99454 * 13 11 10 16 16 N 1.31512 * 119.99962 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 119.99671 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47468 * 89.99542 * 17 15 13 19 19 H 1.48504 * 109.46878 * 209.99960 * 17 15 13 20 20 H 1.48502 * 109.47039 * 329.99661 * 17 15 13 21 21 C 1.53150 * 109.23465 * 311.17527 * 11 10 8 22 22 C 1.46469 * 127.77273 * 180.21087 * 7 6 5 23 23 H 1.09003 * 109.46788 * 299.99341 * 1 2 3 24 24 H 1.08999 * 109.47742 * 59.99668 * 1 2 3 25 25 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46785 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47087 * 300.00733 * 3 2 1 28 28 H 1.09001 * 109.47105 * 60.00230 * 3 2 1 29 29 H 1.08994 * 109.47463 * 299.99675 * 4 2 1 30 30 H 1.08999 * 109.47191 * 60.00141 * 4 2 1 31 31 H 1.09004 * 109.46881 * 179.97438 * 4 2 1 32 32 H 1.08002 * 126.65146 * 359.97438 * 6 5 2 33 33 H 1.09002 * 109.71618 * 135.87168 * 10 8 7 34 34 H 1.08993 * 109.71978 * 256.46983 * 10 8 7 35 35 H 0.96997 * 119.99382 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.46706 * 189.50099 * 21 11 10 37 37 H 1.09005 * 109.47101 * 309.49013 * 21 11 10 38 38 H 1.08998 * 109.78196 * 76.94044 * 22 7 6 39 39 H 1.08990 * 109.56269 * 316.55093 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 2.0301 -2.0439 1.4314 7 7 2.5635 -2.2543 2.6681 8 6 2.8850 -1.0433 3.1818 9 7 2.5605 -0.1260 2.3181 10 6 3.5107 -0.8422 4.5417 11 6 4.0694 -2.1896 5.0163 12 1 4.9483 -2.4478 4.4254 13 6 4.4507 -2.0921 6.4710 14 1 3.9802 -2.7386 7.1971 15 6 5.4002 -1.1776 6.8751 16 7 5.7325 -1.0922 8.1447 17 14 6.2135 -0.0591 5.6194 18 1 5.4245 1.1919 5.4863 19 1 7.5906 0.2694 6.0676 20 1 6.2719 -0.7495 4.3059 21 6 2.9987 -3.2703 4.8395 22 6 2.7807 -3.5346 3.3456 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6765 -0.2074 -2.1392 31 1 3.1299 -0.7209 -1.2496 32 1 1.6707 -2.7984 0.7473 33 1 4.3184 -0.1137 4.4707 34 1 2.7568 -0.4878 5.2446 35 1 6.4007 -0.4492 8.4288 36 1 3.3256 -4.1887 5.3270 37 1 2.0646 -2.9331 5.2888 38 1 3.6594 -4.0276 2.9298 39 1 1.9065 -4.1715 3.2111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261106922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:27 Heat of formation + Delta-G solvation = 20.436268 kcal Electronic energy + Delta-G solvation = -18611.751286 eV Core-core repulsion = 15939.646122 eV Total energy + Delta-G solvation = -2672.105164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.26846 -38.57549 -36.94243 -34.92096 -33.70121 -30.36504 -29.96055 -28.06954 -28.02481 -26.64449 -24.90210 -22.96071 -22.22236 -19.86316 -19.65845 -18.80645 -17.78412 -16.79117 -16.60608 -15.70573 -15.25307 -15.16836 -15.05802 -14.84020 -14.51652 -14.45366 -14.27020 -13.70624 -13.19401 -13.03547 -12.90274 -12.71123 -12.49326 -12.33401 -12.16715 -11.94074 -11.81089 -11.70851 -11.68480 -11.36217 -11.23375 -10.82528 -10.70605 -10.39026 -9.03135 -8.36654 -6.40114 1.16038 1.26681 1.31697 1.38323 1.98998 2.17174 2.24576 2.96936 3.43357 3.70527 3.87232 3.91660 4.04252 4.14139 4.20258 4.30932 4.44359 4.49488 4.55023 4.64292 4.71055 4.85501 4.86614 4.91094 4.96512 4.98234 5.06893 5.08892 5.22323 5.25758 5.30221 5.43977 5.48399 5.53762 5.57356 5.61125 5.98367 6.22301 6.33829 6.67754 7.26129 7.27848 8.79621 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031065 B = 0.006613 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.113803 B = 4232.907310 C = 4795.111189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.014 3.986 3 C -0.124 4.124 4 C -0.130 4.130 5 C -0.015 4.015 6 C -0.049 4.049 7 N -0.450 5.450 8 C 0.192 3.808 9 N -0.525 5.525 10 C -0.035 4.035 11 C 0.014 3.986 12 H 0.027 0.973 13 C -0.514 4.514 14 H 0.051 0.949 15 C 0.027 3.973 16 N -0.939 5.939 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.291 1.291 20 H -0.259 1.259 21 C -0.111 4.111 22 C 0.104 3.896 23 H 0.034 0.966 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.208 0.792 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.267 0.733 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 -3.324 -19.095 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.013 3.987 3 C -0.182 4.182 4 C -0.187 4.187 5 C -0.145 4.145 6 C -0.183 4.183 7 N -0.132 5.132 8 C -0.071 4.071 9 N -0.244 5.244 10 C -0.074 4.074 11 C -0.006 4.006 12 H 0.045 0.955 13 C -0.551 4.551 14 H 0.069 0.931 15 C -0.171 4.171 16 N -0.579 5.579 17 Si 0.759 3.241 18 H -0.200 1.200 19 H -0.218 1.218 20 H -0.183 1.183 21 C -0.148 4.148 22 C -0.017 4.017 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.224 0.776 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.249 -2.580 -18.773 21.086 hybrid contribution 0.733 0.106 0.350 0.819 sum -8.516 -2.473 -18.423 20.446 Atomic orbital electron populations 1.21805 0.92724 1.02378 1.01658 1.18955 0.95786 0.94361 0.89596 1.21632 0.99928 0.95387 1.01239 1.21829 1.00360 1.00837 0.95715 1.21178 1.05787 0.91201 0.96310 1.22728 1.07963 0.98800 0.88790 1.45592 1.45012 1.08224 1.14371 1.23383 1.04152 0.81377 0.98173 1.69896 1.18434 1.33053 1.03042 1.20624 0.98385 1.00661 0.87775 1.19197 0.94966 0.91258 0.95156 0.95479 1.21222 1.21625 1.19765 0.92532 0.93087 1.25654 0.96979 0.98272 0.96243 1.69991 1.33634 1.37588 1.16695 0.86118 0.77533 0.80189 0.80221 1.20014 1.21827 1.18337 1.21741 0.99073 1.00349 0.93656 1.22285 1.04493 0.82275 0.92631 0.94687 0.90288 0.91678 0.94651 0.90672 0.94370 0.91138 0.90340 0.93999 0.77567 0.92940 0.90787 0.92329 0.88643 0.92071 0.88593 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.46 71.98 0.61 -1.96 16 2 C 0.01 0.34 0.95 -52.93 -0.05 0.29 16 3 C -0.12 -3.26 8.04 71.98 0.58 -2.68 16 4 C -0.13 -2.36 8.19 71.98 0.59 -1.77 16 5 C -0.02 -0.49 5.53 41.40 0.23 -0.26 16 6 C -0.05 -1.38 10.90 83.22 0.91 -0.47 16 7 N -0.45 -14.73 3.13 -513.82 -1.61 -16.34 16 8 C 0.19 7.86 7.65 138.23 1.06 8.92 16 9 N -0.52 -21.51 10.59 -175.69 -1.86 -23.37 16 10 C -0.04 -1.61 4.88 30.09 0.15 -1.46 16 11 C 0.01 0.61 1.71 -11.36 -0.02 0.59 16 12 H 0.03 1.25 7.19 -2.39 -0.02 1.23 16 13 C -0.51 -28.00 9.11 25.60 0.23 -27.76 16 14 H 0.05 3.00 7.99 -2.91 -0.02 2.97 16 15 C 0.03 1.56 5.45 84.66 0.46 2.02 16 16 N -0.94 -57.61 13.96 21.45 0.30 -57.31 16 17 Si 0.93 46.15 24.28 68.60 1.67 47.81 16 18 H -0.27 -13.51 6.98 99.48 0.69 -12.81 16 19 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 20 H -0.26 -12.37 6.50 99.48 0.65 -11.72 16 21 C -0.11 -3.78 5.18 30.74 0.16 -3.62 16 22 C 0.10 2.74 6.98 86.48 0.60 3.34 16 23 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.15 8.09 -2.39 -0.02 1.13 16 29 H 0.07 1.04 7.50 -2.39 -0.02 1.03 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.21 3.82 7.67 -2.91 -0.02 3.80 16 33 H 0.05 2.55 3.73 -2.39 -0.01 2.54 16 34 H 0.07 3.46 8.11 -2.39 -0.02 3.44 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.10 3.03 8.12 -2.39 -0.02 3.01 16 37 H 0.06 2.14 8.12 -2.38 -0.02 2.12 16 38 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -68.99 303.66 4.93 -64.05 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.94 Total: 9.98 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 5.50 Total: -24.83 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -3.17 Total: -97.02 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.67 Total: 47.81 kcal Total: -68.99 4.93 -64.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261106922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.490 kcal (2) G-P(sol) polarization free energy of solvation -68.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds