Wall clock time and date at job start Mon Mar 30 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47078 * 2 1 4 4 C 1.53005 * 109.47452 * 239.99671 * 2 1 3 5 5 C 1.50701 * 109.47403 * 119.99276 * 2 1 3 6 6 C 1.34860 * 125.95690 * 75.00104 * 5 2 1 7 7 N 1.36323 * 106.68579 * 180.02562 * 6 5 2 8 8 C 1.35419 * 107.39611 * 0.03627 * 7 6 5 9 9 N 1.30092 * 108.63476 * 359.94933 * 8 7 6 10 10 C 1.51046 * 123.98037 * 179.88690 * 8 7 6 11 11 C 1.53402 * 108.20328 * 344.00651 * 10 8 7 12 12 H 1.08994 * 109.55262 * 288.89924 * 11 10 8 13 13 C 1.50697 * 109.51046 * 168.77293 * 11 10 8 14 14 H 1.08002 * 120.00599 * 240.24748 * 13 11 10 15 15 C 1.37880 * 119.99675 * 60.24281 * 13 11 10 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 11 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 11 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 C 1.53157 * 109.23271 * 48.85134 * 11 10 8 22 22 C 1.46475 * 127.77453 * 180.02562 * 7 6 5 23 23 H 1.09001 * 109.46681 * 300.00166 * 1 2 3 24 24 H 1.08994 * 109.47071 * 60.00584 * 1 2 3 25 25 H 1.09001 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47543 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47141 * 299.99696 * 3 2 1 28 28 H 1.08997 * 109.47534 * 59.99583 * 3 2 1 29 29 H 1.08997 * 109.46870 * 300.00424 * 4 2 1 30 30 H 1.09001 * 109.46826 * 59.99714 * 4 2 1 31 31 H 1.08996 * 109.47119 * 179.97438 * 4 2 1 32 32 H 1.07993 * 126.66025 * 0.02562 * 6 5 2 33 33 H 1.09001 * 109.71678 * 224.33543 * 10 8 7 34 34 H 1.08996 * 109.71665 * 103.68761 * 10 8 7 35 35 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.46787 * 50.52575 * 21 11 10 37 37 H 1.08996 * 109.46531 * 170.51137 * 21 11 10 38 38 H 1.08993 * 109.58385 * 43.10687 * 22 7 6 39 39 H 1.09001 * 109.58280 * 282.69723 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7102 1.2305 6 6 2.0300 -2.0438 1.4316 7 7 2.5683 -2.2544 2.6662 8 6 2.8827 -1.0428 3.1829 9 7 2.5598 -0.1258 2.3185 10 6 3.5036 -0.8412 4.5450 11 6 3.3304 -2.1373 5.3471 12 1 2.2822 -2.2607 5.6191 13 6 4.1704 -2.0719 6.5966 14 1 4.9472 -2.8033 6.7641 15 6 3.9472 -1.0782 7.5260 16 7 4.6798 -1.0214 8.6168 17 14 2.6032 0.1865 7.2367 18 1 3.1655 1.3462 6.4989 19 1 1.5110 -0.4256 6.4382 20 1 2.0650 0.6445 8.5427 21 6 3.7798 -3.3247 4.4904 22 6 2.7839 -3.5346 3.3445 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1301 -0.7209 -1.2494 32 1 1.6714 -2.7984 0.7474 33 1 3.0032 -0.0209 5.0595 34 1 4.5642 -0.6152 4.4359 35 1 4.5225 -0.3225 9.2707 36 1 4.7690 -3.1226 4.0797 37 1 3.8190 -4.2229 5.1066 38 1 3.1879 -4.2591 2.6375 39 1 1.8381 -3.8999 3.7446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261106926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:30 Heat of formation + Delta-G solvation = 37.918056 kcal Electronic energy + Delta-G solvation = -18609.955678 eV Core-core repulsion = 15938.608581 eV Total energy + Delta-G solvation = -2671.347097 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.90356 -37.28301 -35.56358 -33.28250 -31.79705 -28.93356 -28.46677 -27.16605 -26.95606 -24.91492 -23.40659 -21.74884 -20.54480 -18.43291 -18.31491 -16.88111 -16.39473 -15.37537 -14.86126 -14.47656 -14.02301 -13.87390 -13.45345 -13.38582 -13.31026 -12.88372 -12.58917 -12.26014 -12.14993 -11.95768 -11.54334 -11.32389 -11.10021 -10.92039 -10.78016 -10.75284 -10.38932 -10.33411 -9.98299 -9.61833 -9.30600 -9.24585 -9.00307 -8.64439 -7.70369 -6.17638 -4.19636 2.50544 3.24295 3.29427 3.37179 3.38632 3.56698 4.33622 4.65993 4.91751 5.08619 5.13462 5.17453 5.21054 5.28177 5.32039 5.50671 5.62788 5.65743 5.70777 5.84696 5.86081 5.98175 6.04185 6.05652 6.09155 6.18879 6.28271 6.36829 6.44407 6.46766 6.57713 6.60910 6.85451 6.94485 7.20964 7.27586 7.57031 7.73038 8.37997 8.65946 8.84639 9.43609 10.94888 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031069 B = 0.006610 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.013794 B = 4234.812795 C = 4795.892003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.018 3.982 3 C -0.127 4.127 4 C -0.135 4.135 5 C 0.005 3.995 6 C -0.068 4.068 7 N -0.452 5.452 8 C 0.230 3.770 9 N -0.496 5.496 10 C -0.043 4.043 11 C 0.013 3.987 12 H 0.033 0.967 13 C -0.518 4.518 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.894 5.894 17 Si 0.876 3.124 18 H -0.272 1.272 19 H -0.266 1.266 20 H -0.293 1.293 21 C -0.115 4.115 22 C 0.101 3.899 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.164 0.836 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.266 0.734 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 -2.022 -16.357 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.017 3.983 3 C -0.184 4.184 4 C -0.193 4.193 5 C -0.125 4.125 6 C -0.202 4.202 7 N -0.134 5.134 8 C -0.033 4.033 9 N -0.215 5.215 10 C -0.081 4.081 11 C -0.007 4.007 12 H 0.051 0.949 13 C -0.556 4.556 14 H 0.096 0.904 15 C -0.127 4.127 16 N -0.531 5.531 17 Si 0.706 3.294 18 H -0.198 1.198 19 H -0.191 1.191 20 H -0.220 1.220 21 C -0.153 4.153 22 C -0.021 4.021 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.181 0.819 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.305 -1.257 -16.001 17.245 hybrid contribution -0.833 -0.226 -0.176 0.881 sum -7.138 -1.483 -16.177 17.744 Atomic orbital electron populations 1.21851 0.94314 1.01529 1.01503 1.18761 0.94595 0.94993 0.89979 1.21655 1.01196 0.94492 1.01061 1.21862 1.01207 0.99877 0.96328 1.20477 1.05717 0.90162 0.96114 1.22047 1.10150 0.98298 0.89661 1.45423 1.45784 1.08402 1.13806 1.23923 1.01510 0.79675 0.98184 1.69973 1.18014 1.31803 1.01689 1.20982 1.00116 1.01522 0.85529 1.19278 0.98047 0.89197 0.94140 0.94917 1.20893 1.18831 1.14568 1.01297 0.90357 1.24986 0.95581 0.97317 0.94801 1.69879 1.39484 1.33892 1.09892 0.87013 0.83112 0.82466 0.76852 1.19787 1.19078 1.22009 1.21856 0.97318 1.01470 0.94644 1.22134 1.01361 0.82852 0.95738 0.92608 0.92660 0.92913 0.92702 0.93483 0.91998 0.92840 0.92562 0.92632 0.81914 0.90863 0.89256 0.92394 0.91533 0.89748 0.90291 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.46 37.16 0.31 -1.29 16 2 C 0.02 0.24 0.95 -155.66 -0.15 0.09 16 3 C -0.13 -1.73 8.04 37.16 0.30 -1.43 16 4 C -0.13 -1.48 8.19 37.16 0.30 -1.18 16 5 C 0.01 0.09 5.53 -82.71 -0.46 -0.37 16 6 C -0.07 -1.09 10.90 -16.75 -0.18 -1.27 16 7 N -0.45 -8.06 3.13 -113.75 -0.36 -8.41 16 8 C 0.23 4.79 7.65 -155.24 -1.19 3.60 16 9 N -0.50 -10.27 10.59 -6.88 -0.07 -10.34 16 10 C -0.04 -0.95 4.90 -27.51 -0.13 -1.09 16 11 C 0.01 0.29 1.71 -91.48 -0.16 0.13 16 12 H 0.03 0.76 7.17 -51.93 -0.37 0.39 16 13 C -0.52 -13.76 9.11 -34.44 -0.31 -14.08 16 14 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 16 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 17 Si 0.88 21.67 24.29 -169.99 -4.13 17.55 16 18 H -0.27 -6.65 6.98 56.52 0.39 -6.26 16 19 H -0.27 -6.45 6.51 56.52 0.37 -6.08 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 C -0.12 -2.06 5.18 -26.51 -0.14 -2.20 16 22 C 0.10 1.53 6.98 -3.92 -0.03 1.50 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 29 H 0.05 0.53 7.50 -51.93 -0.39 0.14 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.16 2.03 7.66 -52.49 -0.40 1.63 16 33 H 0.07 1.74 3.76 -51.93 -0.20 1.55 16 34 H 0.09 2.00 8.11 -51.93 -0.42 1.58 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 37 H 0.08 1.42 8.11 -51.93 -0.42 0.99 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 303.70 15.07 4.58 4.58 Total: -1.00 -30.45 303.70 -7.58 -38.03 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.44 Total: -0.09 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.92 Total: -15.54 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.34 Total: -44.52 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.13 Total: 17.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.45 -7.58 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261106926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.944 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds