Wall clock time and date at job start Mon Mar 30 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47078 * 2 1 4 4 C 1.53005 * 109.47452 * 239.99671 * 2 1 3 5 5 C 1.50701 * 109.47403 * 119.99276 * 2 1 3 6 6 C 1.34860 * 125.95690 * 75.00104 * 5 2 1 7 7 N 1.36323 * 106.68579 * 180.02562 * 6 5 2 8 8 C 1.35419 * 107.39611 * 0.03627 * 7 6 5 9 9 N 1.30092 * 108.63476 * 359.94933 * 8 7 6 10 10 C 1.51046 * 123.98037 * 179.88690 * 8 7 6 11 11 C 1.53402 * 108.20328 * 344.00651 * 10 8 7 12 12 H 1.08994 * 109.55262 * 288.89924 * 11 10 8 13 13 C 1.50697 * 109.51046 * 168.77293 * 11 10 8 14 14 H 1.08002 * 120.00599 * 240.24748 * 13 11 10 15 15 C 1.37880 * 119.99675 * 60.24281 * 13 11 10 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 11 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 11 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 C 1.53157 * 109.23271 * 48.85134 * 11 10 8 22 22 C 1.46475 * 127.77453 * 180.02562 * 7 6 5 23 23 H 1.09001 * 109.46681 * 300.00166 * 1 2 3 24 24 H 1.08994 * 109.47071 * 60.00584 * 1 2 3 25 25 H 1.09001 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47543 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47141 * 299.99696 * 3 2 1 28 28 H 1.08997 * 109.47534 * 59.99583 * 3 2 1 29 29 H 1.08997 * 109.46870 * 300.00424 * 4 2 1 30 30 H 1.09001 * 109.46826 * 59.99714 * 4 2 1 31 31 H 1.08996 * 109.47119 * 179.97438 * 4 2 1 32 32 H 1.07993 * 126.66025 * 0.02562 * 6 5 2 33 33 H 1.09001 * 109.71678 * 224.33543 * 10 8 7 34 34 H 1.08996 * 109.71665 * 103.68761 * 10 8 7 35 35 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.46787 * 50.52575 * 21 11 10 37 37 H 1.08996 * 109.46531 * 170.51137 * 21 11 10 38 38 H 1.08993 * 109.58385 * 43.10687 * 22 7 6 39 39 H 1.09001 * 109.58280 * 282.69723 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7102 1.2305 6 6 2.0300 -2.0438 1.4316 7 7 2.5683 -2.2544 2.6662 8 6 2.8827 -1.0428 3.1829 9 7 2.5598 -0.1258 2.3185 10 6 3.5036 -0.8412 4.5450 11 6 3.3304 -2.1373 5.3471 12 1 2.2822 -2.2607 5.6191 13 6 4.1704 -2.0719 6.5966 14 1 4.9472 -2.8033 6.7641 15 6 3.9472 -1.0782 7.5260 16 7 4.6798 -1.0214 8.6168 17 14 2.6032 0.1865 7.2367 18 1 3.1655 1.3462 6.4989 19 1 1.5110 -0.4256 6.4382 20 1 2.0650 0.6445 8.5427 21 6 3.7798 -3.3247 4.4904 22 6 2.7839 -3.5346 3.3445 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1301 -0.7209 -1.2494 32 1 1.6714 -2.7984 0.7474 33 1 3.0032 -0.0209 5.0595 34 1 4.5642 -0.6152 4.4359 35 1 4.5225 -0.3225 9.2707 36 1 4.7690 -3.1226 4.0797 37 1 3.8190 -4.2229 5.1066 38 1 3.1879 -4.2591 2.6375 39 1 1.8381 -3.8999 3.7446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261106926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:29 Heat of formation + Delta-G solvation = 20.287915 kcal Electronic energy + Delta-G solvation = -18610.720179 eV Core-core repulsion = 15938.608581 eV Total energy + Delta-G solvation = -2672.111597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.26727 -38.57414 -36.94138 -34.91994 -33.70012 -30.36410 -29.95916 -28.06508 -28.03003 -26.64388 -24.90005 -22.96027 -22.22223 -19.86106 -19.65621 -18.80833 -17.77949 -16.79055 -16.59965 -15.73329 -15.20133 -15.18369 -15.07679 -14.79017 -14.54739 -14.45652 -14.28854 -13.70085 -13.18049 -13.03775 -12.90281 -12.71526 -12.49465 -12.33757 -12.16704 -11.93973 -11.80274 -11.72784 -11.66983 -11.36554 -11.23396 -10.82480 -10.70575 -10.38905 -9.03101 -8.36595 -6.40095 1.16152 1.26655 1.31689 1.38312 1.99013 2.17226 2.24625 2.96965 3.43467 3.70562 3.87313 3.91807 4.04291 4.14232 4.20217 4.31028 4.44383 4.49596 4.55054 4.64318 4.71032 4.85668 4.86173 4.91357 4.96463 4.98358 5.07099 5.08741 5.22422 5.25788 5.30347 5.44116 5.48463 5.53422 5.57490 5.61395 5.98442 6.22332 6.33875 6.67799 7.26171 7.27952 8.79657 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031069 B = 0.006610 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.013794 B = 4234.812795 C = 4795.892003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.014 3.986 3 C -0.124 4.124 4 C -0.129 4.129 5 C -0.015 4.015 6 C -0.049 4.049 7 N -0.450 5.450 8 C 0.191 3.809 9 N -0.525 5.525 10 C -0.035 4.035 11 C 0.014 3.986 12 H 0.027 0.973 13 C -0.513 4.513 14 H 0.051 0.949 15 C 0.027 3.973 16 N -0.939 5.939 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.259 1.259 20 H -0.291 1.291 21 C -0.111 4.111 22 C 0.104 3.896 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.208 0.792 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.267 0.733 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 -3.401 -19.601 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.013 3.987 3 C -0.181 4.181 4 C -0.186 4.186 5 C -0.145 4.145 6 C -0.183 4.183 7 N -0.132 5.132 8 C -0.071 4.071 9 N -0.244 5.244 10 C -0.074 4.074 11 C -0.006 4.006 12 H 0.045 0.955 13 C -0.551 4.551 14 H 0.069 0.931 15 C -0.171 4.171 16 N -0.579 5.579 17 Si 0.759 3.241 18 H -0.200 1.200 19 H -0.183 1.183 20 H -0.218 1.218 21 C -0.148 4.148 22 C -0.017 4.017 23 H 0.051 0.949 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.224 0.776 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.140 0.860 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.177 -2.653 -19.250 21.082 hybrid contribution -0.211 0.171 0.773 0.819 sum -8.388 -2.482 -18.477 20.443 Atomic orbital electron populations 1.21816 0.92958 1.02332 1.01588 1.18957 0.95618 0.94450 0.89678 1.21627 1.00081 0.95294 1.01134 1.21821 1.00476 1.00766 0.95584 1.21179 1.05751 0.91204 0.96344 1.22730 1.07841 0.98815 0.88895 1.45599 1.45074 1.08216 1.14333 1.23386 1.04368 0.81348 0.97986 1.69892 1.18478 1.33054 1.03002 1.20623 0.99237 1.00489 0.87079 1.19199 0.96714 0.91504 0.93172 0.95481 1.21221 1.18045 1.13069 1.02800 0.93088 1.25654 0.97505 0.99249 0.94740 1.69992 1.41592 1.35177 1.11154 0.86119 0.81031 0.80379 0.76553 1.20008 1.18337 1.21812 1.21740 0.97995 0.99715 0.95371 1.22293 1.01486 0.82443 0.95446 0.94896 0.90223 0.91730 0.94375 0.90704 0.94563 0.91191 0.90386 0.93766 0.77572 0.92942 0.90770 0.92331 0.92057 0.88644 0.86048 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.46 71.98 0.61 -2.05 16 2 C 0.01 0.34 0.95 -52.93 -0.05 0.29 16 3 C -0.12 -3.22 8.04 71.98 0.58 -2.64 16 4 C -0.13 -2.30 8.19 71.98 0.59 -1.71 16 5 C -0.02 -0.49 5.53 41.41 0.23 -0.26 16 6 C -0.05 -1.38 10.90 83.22 0.91 -0.47 16 7 N -0.45 -14.74 3.13 -513.80 -1.61 -16.35 16 8 C 0.19 7.85 7.65 138.24 1.06 8.91 16 9 N -0.52 -21.50 10.59 -175.68 -1.86 -23.37 16 10 C -0.04 -1.60 4.90 30.09 0.15 -1.45 16 11 C 0.01 0.61 1.71 -11.35 -0.02 0.59 16 12 H 0.03 1.24 7.17 -2.39 -0.02 1.23 16 13 C -0.51 -27.99 9.11 25.60 0.23 -27.75 16 14 H 0.05 3.00 7.99 -2.91 -0.02 2.97 16 15 C 0.03 1.56 5.45 84.65 0.46 2.02 16 16 N -0.94 -57.60 13.96 21.45 0.30 -57.31 16 17 Si 0.93 46.13 24.29 68.60 1.67 47.79 16 18 H -0.27 -13.50 6.98 99.48 0.69 -12.81 16 19 H -0.26 -12.37 6.51 99.48 0.65 -11.72 16 20 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 21 C -0.11 -3.78 5.18 30.74 0.16 -3.62 16 22 C 0.10 2.74 6.98 86.47 0.60 3.35 16 23 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.04 1.10 8.08 -2.39 -0.02 1.08 16 29 H 0.07 1.02 7.50 -2.39 -0.02 1.00 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.21 3.82 7.66 -2.91 -0.02 3.80 16 33 H 0.05 2.55 3.76 -2.39 -0.01 2.54 16 34 H 0.07 3.46 8.11 -2.39 -0.02 3.44 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 37 H 0.10 3.03 8.11 -2.39 -0.02 3.01 16 38 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -68.97 303.70 4.93 -64.04 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.94 Total: 10.00 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 5.50 Total: -24.81 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -3.17 Total: -97.02 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.67 Total: 47.79 kcal Total: -68.97 4.93 -64.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261106926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.326 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds