Wall clock time and date at job start Mon Mar 30 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.36881 * 126.39874 * 300.02426 * 4 2 1 6 6 C 1.34664 * 106.81641 * 179.97438 * 5 4 2 7 7 C 1.50697 * 125.99107 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47504 * 125.00457 * 7 6 5 9 9 H 1.07996 * 120.00050 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31504 * 120.00024 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99796 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46822 * 90.00013 * 12 10 8 14 14 H 1.48502 * 109.47035 * 209.99871 * 12 10 8 15 15 H 1.48497 * 109.47197 * 330.00171 * 12 10 8 16 16 N 1.34137 * 108.02216 * 0.02562 * 6 5 4 17 17 C 1.30498 * 109.25243 * 359.72255 * 16 6 5 18 18 C 1.50703 * 125.64791 * 180.29444 * 17 16 6 19 19 C 1.53781 * 113.61348 * 39.31236 * 18 17 16 20 20 C 1.53954 * 87.01741 * 220.04849 * 19 18 17 21 21 C 1.53772 * 87.11162 * 25.36092 * 20 19 18 22 22 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 23 23 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 24 24 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 26 26 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 27 27 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 28 28 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 29 29 H 1.07999 * 126.58974 * 359.96879 * 5 4 2 30 30 H 1.09007 * 109.46916 * 245.00508 * 7 6 5 31 31 H 1.08999 * 109.47330 * 4.99917 * 7 6 5 32 32 H 0.97002 * 120.00227 * 180.02562 * 11 10 8 33 33 H 1.08997 * 112.84737 * 170.50789 * 18 17 16 34 34 H 1.09001 * 113.61751 * 334.56743 * 19 18 17 35 35 H 1.08997 * 113.61483 * 105.47044 * 19 18 17 36 36 H 1.09010 * 113.53620 * 270.81034 * 20 19 18 37 37 H 1.09000 * 113.74724 * 139.94950 * 20 19 18 38 38 H 1.09006 * 113.61474 * 220.08895 * 21 20 19 39 39 H 1.09001 * 113.61672 * 89.18711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.7693 -0.3391 2.4956 6 6 2.4047 -1.2382 3.2710 7 6 2.4165 -1.2567 4.7778 8 6 1.9409 -2.6002 5.2675 9 1 1.6580 -3.3642 4.5585 10 6 1.8660 -2.8538 6.6207 11 7 2.2091 -1.9231 7.4841 12 14 1.2759 -4.5190 7.2276 13 1 2.4373 -5.4329 7.3728 14 1 0.6057 -4.3574 8.5429 15 1 0.3156 -5.0904 6.2496 16 7 3.0253 -2.1145 2.4671 17 6 2.7936 -1.7959 1.2230 18 6 3.3087 -2.5370 0.0161 19 6 3.2947 -4.0660 0.1797 20 6 4.6553 -4.0750 -0.5406 21 6 4.8424 -2.6333 -0.0396 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.1772 0.4984 2.8337 30 1 3.4305 -1.0778 5.1354 31 1 1.7551 -0.4772 5.1560 32 1 2.1567 -2.1015 8.4361 33 1 2.8587 -2.1934 -0.9154 34 1 3.3479 -4.3946 1.2177 35 1 2.4997 -4.5578 -0.3807 36 1 4.5733 -4.1533 -1.6248 37 1 5.3709 -4.7804 -0.1182 38 1 5.2951 -1.9701 -0.7768 39 1 5.3196 -2.5693 0.9383 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261181237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:07 Heat of formation + Delta-G solvation = 62.539886 kcal Electronic energy + Delta-G solvation = -18246.509748 eV Core-core repulsion = 15576.230334 eV Total energy + Delta-G solvation = -2670.279414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52056 -38.17774 -35.85112 -33.01793 -30.66887 -29.76088 -27.51128 -27.39869 -25.41623 -25.02569 -23.16624 -21.59430 -20.05490 -19.26889 -18.47629 -16.54862 -16.01909 -15.32172 -14.83338 -14.60365 -14.46512 -14.30270 -13.36635 -13.05864 -12.85681 -12.42641 -12.32562 -12.19969 -12.13872 -11.94576 -11.68204 -11.36387 -11.17467 -11.12288 -10.64131 -10.57411 -10.50245 -10.30836 -10.24310 -9.68551 -9.22519 -8.86142 -8.66553 -8.23677 -7.27774 -5.85314 -3.84175 2.73247 3.26597 3.43085 3.47935 3.53075 4.05481 4.54194 4.61951 4.71138 4.78703 4.82468 4.91415 4.94844 5.11263 5.19676 5.37306 5.38615 5.50431 5.56451 5.60269 5.65378 5.78425 5.82896 5.94668 5.98057 6.04045 6.05092 6.22488 6.28935 6.43990 6.63668 6.74703 7.04687 7.64912 7.68396 7.86504 8.02261 8.13275 8.58114 9.10758 9.20816 9.77183 11.25846 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.006682 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.449149 B = 4189.200086 C = 5113.057539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.129 3.871 3 C -0.160 4.160 4 N -0.459 5.459 5 C -0.089 4.089 6 C 0.058 3.942 7 C 0.091 3.909 8 C -0.491 4.491 9 H 0.057 0.943 10 C 0.052 3.948 11 N -0.902 5.902 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.276 1.276 16 N -0.469 5.469 17 C 0.194 3.806 18 C -0.028 4.028 19 C -0.121 4.121 20 C -0.143 4.143 21 C -0.122 4.122 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.161 0.839 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.259 0.741 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 3.487 -19.276 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.145 5.145 5 C -0.218 4.218 6 C -0.071 4.071 7 C 0.054 3.946 8 C -0.530 4.530 9 H 0.075 0.925 10 C -0.147 4.147 11 N -0.543 5.543 12 Si 0.722 3.278 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.201 1.201 16 N -0.188 5.188 17 C -0.067 4.067 18 C -0.048 4.048 19 C -0.159 4.159 20 C -0.180 4.180 21 C -0.161 4.161 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.178 0.822 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.498 2.956 -18.922 19.158 hybrid contribution -0.981 -0.036 0.161 0.995 sum -0.483 2.920 -18.761 18.993 Atomic orbital electron populations 1.22151 0.93866 1.03037 1.02830 1.21262 0.95147 0.93792 0.87250 1.22137 1.01967 0.94816 1.02833 1.45340 1.40092 1.23125 1.05952 1.22266 1.11193 1.05866 0.82427 1.21618 0.96308 0.91123 0.98062 1.17645 0.97666 0.97701 0.81619 1.21091 1.42259 0.98438 0.91176 0.92455 1.24989 0.96001 0.96818 0.96929 1.69955 1.49540 1.33132 1.01661 0.86570 0.78840 0.84596 0.77843 1.20733 1.21439 1.20069 1.70105 1.23549 1.26823 0.98344 1.22969 0.98732 0.89694 0.95315 1.20836 0.96584 0.95318 0.92071 1.22955 0.96723 0.93645 1.02620 1.22839 0.98172 0.97405 0.99612 1.22923 0.94407 0.96473 1.02272 0.91559 0.91207 0.91894 0.88961 0.91196 0.91603 0.91956 0.82212 0.95191 0.95366 0.93181 0.89083 0.88107 0.91885 0.90654 0.91138 0.91944 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.25 37.16 0.34 -1.36 16 2 C 0.13 1.52 3.54 -67.92 -0.24 1.28 16 3 C -0.16 -1.62 9.25 37.16 0.34 -1.28 16 4 N -0.46 -7.71 2.61 -106.82 -0.28 -7.99 16 5 C -0.09 -1.76 10.49 -16.56 -0.17 -1.93 16 6 C 0.06 1.40 6.30 -82.85 -0.52 0.87 16 7 C 0.09 2.55 5.54 -29.04 -0.16 2.39 16 8 C -0.49 -14.79 9.08 -34.44 -0.31 -15.10 16 9 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 10 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -27.91 13.29 55.43 0.74 -27.17 16 12 Si 0.89 22.85 29.54 -169.99 -5.02 17.83 16 13 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 16 N -0.47 -10.87 10.83 -7.07 -0.08 -10.95 16 17 C 0.19 3.59 6.96 -155.42 -1.08 2.51 16 18 C -0.03 -0.39 4.01 -90.96 -0.36 -0.76 16 19 C -0.12 -1.68 7.63 -25.83 -0.20 -1.88 16 20 C -0.14 -1.62 8.09 -25.83 -0.21 -1.83 16 21 C -0.12 -1.59 7.63 -25.93 -0.20 -1.78 16 22 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.09 0.93 6.44 -51.93 -0.33 0.60 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.72 7.95 -51.93 -0.41 0.31 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.16 2.83 8.06 -52.49 -0.42 2.41 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 33 H 0.09 1.04 6.65 -51.93 -0.35 0.70 16 34 H 0.10 1.72 7.78 -51.93 -0.40 1.31 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 LS Contribution 321.15 15.07 4.84 4.84 Total: -1.00 -33.61 321.15 -9.19 -42.80 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.52 Total: -1.95 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.87 Total: -17.41 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.38 Total: -46.10 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.61 -9.19 -42.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261181237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.338 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds