Wall clock time and date at job start Mon Mar 30 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.36881 * 126.39874 * 300.02426 * 4 2 1 6 6 C 1.34664 * 106.81641 * 179.97438 * 5 4 2 7 7 C 1.50697 * 125.99107 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47504 * 125.00457 * 7 6 5 9 9 H 1.07996 * 120.00050 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31504 * 120.00024 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99796 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46822 * 90.00013 * 12 10 8 14 14 H 1.48502 * 109.47035 * 209.99871 * 12 10 8 15 15 H 1.48497 * 109.47197 * 330.00171 * 12 10 8 16 16 N 1.34137 * 108.02216 * 0.02562 * 6 5 4 17 17 C 1.30498 * 109.25243 * 359.72255 * 16 6 5 18 18 C 1.50703 * 125.64791 * 180.29444 * 17 16 6 19 19 C 1.53781 * 113.61348 * 39.31236 * 18 17 16 20 20 C 1.53954 * 87.01741 * 220.04849 * 19 18 17 21 21 C 1.53772 * 87.11162 * 25.36092 * 20 19 18 22 22 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 23 23 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 24 24 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 26 26 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 27 27 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 28 28 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 29 29 H 1.07999 * 126.58974 * 359.96879 * 5 4 2 30 30 H 1.09007 * 109.46916 * 245.00508 * 7 6 5 31 31 H 1.08999 * 109.47330 * 4.99917 * 7 6 5 32 32 H 0.97002 * 120.00227 * 180.02562 * 11 10 8 33 33 H 1.08997 * 112.84737 * 170.50789 * 18 17 16 34 34 H 1.09001 * 113.61751 * 334.56743 * 19 18 17 35 35 H 1.08997 * 113.61483 * 105.47044 * 19 18 17 36 36 H 1.09010 * 113.53620 * 270.81034 * 20 19 18 37 37 H 1.09000 * 113.74724 * 139.94950 * 20 19 18 38 38 H 1.09006 * 113.61474 * 220.08895 * 21 20 19 39 39 H 1.09001 * 113.61672 * 89.18711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.7693 -0.3391 2.4956 6 6 2.4047 -1.2382 3.2710 7 6 2.4165 -1.2567 4.7778 8 6 1.9409 -2.6002 5.2675 9 1 1.6580 -3.3642 4.5585 10 6 1.8660 -2.8538 6.6207 11 7 2.2091 -1.9231 7.4841 12 14 1.2759 -4.5190 7.2276 13 1 2.4373 -5.4329 7.3728 14 1 0.6057 -4.3574 8.5429 15 1 0.3156 -5.0904 6.2496 16 7 3.0253 -2.1145 2.4671 17 6 2.7936 -1.7959 1.2230 18 6 3.3087 -2.5370 0.0161 19 6 3.2947 -4.0660 0.1797 20 6 4.6553 -4.0750 -0.5406 21 6 4.8424 -2.6333 -0.0396 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.1772 0.4984 2.8337 30 1 3.4305 -1.0778 5.1354 31 1 1.7551 -0.4772 5.1560 32 1 2.1567 -2.1015 8.4361 33 1 2.8587 -2.1934 -0.9154 34 1 3.3479 -4.3946 1.2177 35 1 2.4997 -4.5578 -0.3807 36 1 4.5733 -4.1533 -1.6248 37 1 5.3709 -4.7804 -0.1182 38 1 5.2951 -1.9701 -0.7768 39 1 5.3196 -2.5693 0.9383 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261181237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:06 Heat of formation + Delta-G solvation = 43.109436 kcal Electronic energy + Delta-G solvation = -18247.352316 eV Core-core repulsion = 15576.230334 eV Total energy + Delta-G solvation = -2671.121982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.99990 -39.25531 -37.03624 -35.21270 -32.40190 -31.24455 -29.29718 -28.20271 -26.49581 -26.46404 -25.04510 -22.86668 -21.44171 -20.68021 -19.68294 -18.40680 -17.79076 -16.47687 -16.37637 -16.18571 -15.76279 -15.41657 -14.72127 -14.43250 -14.24462 -13.95528 -13.66782 -13.36010 -13.32439 -13.23578 -13.10298 -12.90649 -12.63401 -12.55047 -12.28472 -12.06319 -11.79318 -11.63874 -11.50296 -11.30354 -11.25233 -10.64860 -10.45309 -10.19468 -8.94096 -8.16103 -6.25773 1.25239 1.36476 1.39608 1.50469 2.00181 2.32480 2.48931 3.14136 3.50996 3.64333 3.76823 3.81741 3.93522 3.98696 4.08927 4.13857 4.19784 4.59126 4.65174 4.68961 4.71908 4.81120 4.86425 4.88996 4.94243 4.95669 5.10153 5.14249 5.16648 5.22862 5.27960 5.31527 5.50403 5.57716 5.71217 5.79426 6.01479 6.31785 6.58853 6.83715 7.40139 7.51904 8.94126 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.006682 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.449149 B = 4189.200086 C = 5113.057539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 C -0.155 4.155 4 N -0.449 5.449 5 C -0.069 4.069 6 C 0.004 3.996 7 C 0.103 3.897 8 C -0.512 4.512 9 H 0.043 0.957 10 C 0.000 4.000 11 N -0.933 5.933 12 Si 0.965 3.035 13 H -0.274 1.274 14 H -0.273 1.273 15 H -0.271 1.271 16 N -0.520 5.520 17 C 0.201 3.799 18 C -0.029 4.029 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.123 4.123 22 H 0.052 0.948 23 H 0.107 0.893 24 H 0.049 0.951 25 H 0.121 0.879 26 H 0.106 0.894 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.178 0.822 30 H -0.009 1.009 31 H 0.013 0.987 32 H 0.265 0.735 33 H 0.133 0.867 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 3.279 -22.722 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.018 3.982 3 C -0.213 4.213 4 N -0.133 5.133 5 C -0.201 4.201 6 C -0.124 4.124 7 C 0.066 3.934 8 C -0.551 4.551 9 H 0.061 0.939 10 C -0.197 4.197 11 N -0.574 5.574 12 Si 0.790 3.210 13 H -0.200 1.200 14 H -0.198 1.198 15 H -0.195 1.195 16 N -0.240 5.240 17 C -0.061 4.061 18 C -0.049 4.049 19 C -0.169 4.169 20 C -0.160 4.160 21 C -0.162 4.162 22 H 0.071 0.929 23 H 0.125 0.875 24 H 0.068 0.932 25 H 0.139 0.861 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.195 0.805 30 H 0.010 0.990 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.339 2.769 -22.398 22.571 hybrid contribution -0.714 0.090 1.156 1.362 sum -1.054 2.859 -21.241 21.459 Atomic orbital electron populations 1.22153 0.92712 1.02588 1.04057 1.21804 0.96093 0.94632 0.85683 1.22134 1.01407 0.93703 1.04063 1.45641 1.38813 1.22540 1.06344 1.22286 1.09471 1.04750 0.83583 1.21151 1.00314 0.94269 0.96677 1.17271 0.94748 0.96369 0.85055 1.21287 1.43043 0.99145 0.91589 0.93876 1.25899 0.95785 1.01085 0.96884 1.70071 1.49960 1.35263 1.02148 0.85449 0.78535 0.79361 0.77666 1.19971 1.19838 1.19519 1.69945 1.25347 1.28159 1.00537 1.23752 0.97439 0.89708 0.95250 1.21245 0.97406 0.94716 0.91548 1.22908 0.99354 0.93788 1.00823 1.22818 0.95974 0.95885 1.01344 1.22856 0.93416 0.98585 1.01293 0.92894 0.87458 0.93157 0.86101 0.87546 0.92824 0.92810 0.80483 0.99049 0.96873 0.92664 0.84948 0.92515 0.89936 0.86944 0.91359 0.89046 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.25 71.98 0.67 -2.16 16 2 C 0.12 2.40 3.54 44.99 0.16 2.56 16 3 C -0.16 -2.64 9.25 71.98 0.67 -1.97 16 4 N -0.45 -14.63 2.61 -491.88 -1.28 -15.92 16 5 C -0.07 -2.82 10.49 83.09 0.87 -1.94 16 6 C 0.00 0.22 6.30 41.39 0.26 0.48 16 7 C 0.10 6.22 5.54 29.10 0.16 6.38 16 8 C -0.51 -32.61 9.08 25.60 0.23 -32.37 16 9 H 0.04 2.80 7.74 -2.91 -0.02 2.77 16 10 C 0.00 0.03 5.46 84.66 0.46 0.49 16 11 N -0.93 -59.75 13.29 21.45 0.28 -59.46 16 12 Si 0.97 48.05 29.54 68.60 2.03 50.08 16 13 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 15 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 16 N -0.52 -25.38 10.83 -176.28 -1.91 -27.29 16 17 C 0.20 7.42 6.96 138.13 0.96 8.38 16 18 C -0.03 -0.76 4.01 -11.02 -0.04 -0.80 16 19 C -0.13 -3.46 7.63 31.18 0.24 -3.22 16 20 C -0.12 -2.45 8.09 31.18 0.25 -2.20 16 21 C -0.12 -2.96 7.63 31.11 0.24 -2.73 16 22 H 0.05 1.10 7.95 -2.39 -0.02 1.08 16 23 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.12 1.80 6.44 -2.39 -0.02 1.79 16 26 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.05 7.95 -2.39 -0.02 1.03 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.18 6.37 8.06 -2.91 -0.02 6.35 16 30 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 31 H 0.01 0.79 8.11 -2.39 -0.02 0.77 16 32 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.13 2.34 6.65 -2.39 -0.02 2.33 16 34 H 0.06 2.02 7.78 -2.39 -0.02 2.00 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.06 1.77 8.09 -2.39 -0.02 1.75 16 Total: -1.00 -79.32 321.15 5.25 -74.07 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.00 Total: 7.64 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 5.12 Total: -29.11 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -2.91 Total: -102.67 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -79.32 5.25 -74.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261181237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.182 kcal (2) G-P(sol) polarization free energy of solvation -79.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds