Wall clock time and date at job start Mon Mar 30 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32752 * 125.69256 * 2 1 4 4 C 1.32978 * 109.22928 * 180.26509 * 3 2 1 5 5 C 1.39997 * 125.96932 * 179.72421 * 4 3 2 6 6 H 1.08002 * 120.00463 * 179.97438 * 5 4 3 7 7 C 1.40237 * 119.99618 * 0.02562 * 5 4 3 8 8 N 1.30686 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99918 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46890 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47213 * 119.99905 * 9 7 5 12 12 H 1.48495 * 109.47165 * 240.00034 * 9 7 5 13 13 N 1.37543 * 108.07009 * 359.73464 * 4 3 2 14 14 H 0.97006 * 126.55890 * 180.02562 * 13 4 3 15 15 C 1.36218 * 125.69007 * 179.79890 * 2 1 3 16 16 C 1.50703 * 126.40119 * 0.02562 * 15 2 1 17 17 C 1.50474 * 109.62930 * 120.09961 * 16 15 2 18 18 C 1.54268 * 112.38918 * 213.74029 * 17 16 15 19 19 C 1.54072 * 112.94522 * 318.57842 * 18 17 16 20 20 C 1.50471 * 112.49702 * 318.16698 * 19 18 17 21 21 C 1.54245 * 108.51963 * 94.15116 * 20 19 18 22 22 C 1.45532 * 112.40824 * 280.01210 * 21 20 19 23 23 H 1.08997 * 109.46920 * 270.19831 * 1 2 3 24 24 H 1.08997 * 109.46859 * 30.20477 * 1 2 3 25 25 H 1.08999 * 109.46773 * 150.20234 * 1 2 3 26 26 H 0.97004 * 119.99555 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.62712 * 359.71137 * 16 15 2 28 28 H 1.08996 * 108.87961 * 334.83610 * 17 16 15 29 29 H 1.08995 * 108.87705 * 93.27582 * 17 16 15 30 30 H 1.09001 * 108.83427 * 197.61629 * 18 17 16 31 31 H 1.08996 * 108.65089 * 79.41336 * 18 17 16 32 32 H 1.08996 * 108.87148 * 197.39264 * 19 18 17 33 33 H 1.08999 * 108.79473 * 78.89656 * 19 18 17 34 34 H 1.08992 * 109.63290 * 334.44290 * 20 19 18 35 35 H 1.09000 * 109.78743 * 213.95267 * 20 19 18 36 36 H 1.09002 * 108.89218 * 159.25489 * 21 20 19 37 37 H 1.09000 * 108.89510 * 40.77393 * 21 20 19 38 38 H 1.09005 * 108.89581 * 301.18197 * 22 21 20 39 39 H 1.09004 * 108.89612 * 182.69517 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2816 1.0782 0.0000 4 6 3.5568 0.7013 -0.0058 5 6 4.6664 1.5549 -0.0131 6 1 5.6648 1.1428 -0.0170 7 6 4.4817 2.9450 -0.0143 8 7 3.2737 3.4436 -0.0091 9 14 5.9622 4.0840 -0.0233 10 1 7.2082 3.2760 -0.0277 11 1 5.9217 4.9388 -1.2369 12 1 5.9337 4.9425 1.1880 13 7 3.5954 -0.6736 -0.0036 14 1 4.3905 -1.2293 -0.0063 15 6 2.3017 -1.1063 0.0039 16 6 1.8383 -2.5403 0.0084 17 6 2.3597 -3.2439 -1.2153 18 6 1.3774 -4.3096 -1.7436 19 6 0.7250 -5.1355 -0.6184 20 6 1.7046 -5.5164 0.4583 21 6 1.6326 -4.4616 1.5815 22 6 2.3838 -3.2572 1.2604 23 1 -0.3633 0.0036 1.0276 24 1 -0.3633 0.8881 -0.5170 25 1 -0.3633 -0.8918 -0.5107 26 1 3.1459 4.4052 -0.0095 27 1 0.7488 -2.5730 0.0133 28 1 2.5410 -2.5055 -1.9963 29 1 3.3028 -3.7307 -0.9673 30 1 1.9153 -4.9850 -2.4089 31 1 0.5935 -3.8097 -2.3126 32 1 0.3019 -6.0438 -1.0476 33 1 -0.0786 -4.5490 -0.1730 34 1 2.7124 -5.5420 0.0442 35 1 1.4487 -6.4969 0.8599 36 1 2.0339 -4.8941 2.4981 37 1 0.5893 -4.1933 1.7474 38 1 3.4257 -3.5267 1.0871 39 1 2.3343 -2.5738 2.1081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261337212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:00 Heat of formation + Delta-G solvation = 15.462060 kcal Electronic energy + Delta-G solvation = -18522.520417 eV Core-core repulsion = 15850.199555 eV Total energy + Delta-G solvation = -2672.320862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11757 -38.29027 -33.46864 -32.29894 -32.18954 -31.49900 -28.71650 -26.99133 -25.29437 -24.34532 -22.76331 -20.62579 -19.79942 -18.76701 -18.18682 -17.12000 -15.60755 -15.16014 -14.65202 -14.47690 -14.21822 -13.76075 -13.30916 -12.96691 -12.71025 -12.59557 -11.98840 -11.95483 -11.70279 -11.53914 -11.30724 -11.15736 -11.11753 -10.58521 -10.55749 -10.49754 -10.31911 -10.08496 -10.05161 -10.01024 -9.85529 -9.13140 -7.95697 -7.67065 -6.79157 -6.32699 -4.18167 3.07622 3.19497 3.22983 3.68774 4.08416 4.70089 4.77042 4.90957 4.91220 5.02155 5.38041 5.43214 5.46229 5.55114 5.66386 5.70680 5.76860 5.86304 6.01553 6.17349 6.20406 6.21884 6.29390 6.34528 6.39276 6.43500 6.52415 6.56108 6.63412 6.68912 6.73578 6.80585 6.87785 7.25787 7.47245 7.79150 8.15783 8.35902 8.68704 9.06054 9.51541 10.34056 10.60633 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.038275 B = 0.005429 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.377374 B = 5155.873930 C = 5399.952926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.012 3.988 3 N -0.510 5.510 4 C 0.376 3.624 5 C -0.467 4.467 6 H 0.076 0.924 7 C 0.083 3.917 8 N -0.744 5.744 9 Si 0.908 3.092 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.276 1.276 13 N -0.615 5.615 14 H 0.390 0.610 15 C -0.132 4.132 16 C 0.017 3.983 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.113 4.113 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.270 0.730 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 -13.009 -0.079 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.122 4.122 3 N -0.233 5.233 4 C 0.131 3.869 5 C -0.507 4.507 6 H 0.094 0.906 7 C -0.140 4.140 8 N -0.369 5.369 9 Si 0.733 3.267 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.201 1.201 13 N -0.222 5.222 14 H 0.224 0.776 15 C -0.244 4.244 16 C -0.003 4.003 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.150 4.150 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.051 -12.010 -0.077 12.391 hybrid contribution 1.454 -0.544 0.001 1.552 sum -1.597 -12.553 -0.076 12.655 Atomic orbital electron populations 1.19838 0.91080 1.00366 1.00060 1.20469 0.94844 0.89929 1.07002 1.71178 0.98984 1.25452 1.27662 1.20096 0.93267 0.78015 0.95542 1.18102 0.90996 0.90064 1.51534 0.90630 1.25654 0.96381 0.98371 0.93610 1.70031 1.21309 1.12776 1.32818 0.86281 0.81931 0.80181 0.78270 1.18899 1.20132 1.20140 1.43141 1.05766 1.08129 1.65190 0.77578 1.20079 0.85069 0.93898 1.25377 1.18972 0.99437 0.89005 0.92858 1.21507 0.97984 0.96889 0.98563 1.21932 0.98809 0.97131 0.97350 1.21329 0.98623 0.99116 0.96424 1.21333 1.00078 0.97859 0.96139 1.20494 1.00975 0.95906 0.97740 1.20552 0.99104 0.96257 0.99112 0.93388 0.92521 0.93446 0.91948 0.90508 0.91983 0.93178 0.92964 0.92457 0.92927 0.91993 0.91856 0.92580 0.92981 0.92273 0.93214 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.13 10.07 36.01 0.36 -0.77 16 2 C 0.01 0.29 7.07 -82.92 -0.59 -0.30 16 3 N -0.51 -14.82 9.40 -8.95 -0.08 -14.90 16 4 C 0.38 10.47 7.61 -155.60 -1.18 9.29 16 5 C -0.47 -12.85 9.46 -38.17 -0.36 -13.21 16 6 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 7 C 0.08 2.22 5.50 -17.29 -0.10 2.12 16 8 N -0.74 -21.13 11.90 55.56 0.66 -20.47 16 9 Si 0.91 19.51 29.56 -169.99 -5.03 14.48 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 N -0.62 -14.38 6.25 -8.21 -0.05 -14.44 16 14 H 0.39 8.01 8.96 -40.82 -0.37 7.64 16 15 C -0.13 -2.90 5.41 -81.28 -0.44 -3.34 16 16 C 0.02 0.29 2.20 -92.38 -0.20 0.08 16 17 C -0.11 -1.70 4.91 -27.33 -0.13 -1.83 16 18 C -0.11 -1.43 5.85 -25.51 -0.15 -1.58 16 19 C -0.12 -1.31 5.32 -27.43 -0.15 -1.46 16 20 C -0.12 -1.29 5.61 -27.34 -0.15 -1.44 16 21 C -0.11 -1.40 5.26 -29.60 -0.16 -1.56 16 22 C -0.11 -1.70 4.68 -29.60 -0.14 -1.84 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.83 7.16 -51.93 -0.37 0.45 16 26 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 27 H 0.08 1.28 5.67 -51.93 -0.29 0.98 16 28 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 29 H 0.05 0.73 6.65 -51.93 -0.35 0.38 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.71 6.63 -51.93 -0.34 0.37 16 34 H 0.06 0.73 6.99 -51.93 -0.36 0.36 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.72 7.47 -51.93 -0.39 0.34 16 38 H 0.05 0.74 7.48 -51.93 -0.39 0.36 16 39 H 0.06 1.02 7.96 -51.93 -0.41 0.61 16 LS Contribution 303.18 15.07 4.57 4.57 Total: -1.00 -30.69 303.18 -9.49 -40.18 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.18 Total: 6.41 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -3.38 Total: -15.83 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.53 Total: -49.81 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.69 -9.49 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.646 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds