Wall clock time and date at job start Mon Mar 30 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32752 * 125.69256 * 2 1 4 4 C 1.32978 * 109.22928 * 180.26509 * 3 2 1 5 5 C 1.39997 * 125.96932 * 179.72421 * 4 3 2 6 6 H 1.08002 * 120.00463 * 179.97438 * 5 4 3 7 7 C 1.40237 * 119.99618 * 0.02562 * 5 4 3 8 8 N 1.30686 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99918 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46890 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47213 * 119.99905 * 9 7 5 12 12 H 1.48495 * 109.47165 * 240.00034 * 9 7 5 13 13 N 1.37543 * 108.07009 * 359.73464 * 4 3 2 14 14 H 0.97006 * 126.55890 * 180.02562 * 13 4 3 15 15 C 1.36218 * 125.69007 * 179.79890 * 2 1 3 16 16 C 1.50703 * 126.40119 * 0.02562 * 15 2 1 17 17 C 1.50474 * 109.62930 * 120.09961 * 16 15 2 18 18 C 1.54268 * 112.38918 * 213.74029 * 17 16 15 19 19 C 1.54072 * 112.94522 * 318.57842 * 18 17 16 20 20 C 1.50471 * 112.49702 * 318.16698 * 19 18 17 21 21 C 1.54245 * 108.51963 * 94.15116 * 20 19 18 22 22 C 1.45532 * 112.40824 * 280.01210 * 21 20 19 23 23 H 1.08997 * 109.46920 * 270.19831 * 1 2 3 24 24 H 1.08997 * 109.46859 * 30.20477 * 1 2 3 25 25 H 1.08999 * 109.46773 * 150.20234 * 1 2 3 26 26 H 0.97004 * 119.99555 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.62712 * 359.71137 * 16 15 2 28 28 H 1.08996 * 108.87961 * 334.83610 * 17 16 15 29 29 H 1.08995 * 108.87705 * 93.27582 * 17 16 15 30 30 H 1.09001 * 108.83427 * 197.61629 * 18 17 16 31 31 H 1.08996 * 108.65089 * 79.41336 * 18 17 16 32 32 H 1.08996 * 108.87148 * 197.39264 * 19 18 17 33 33 H 1.08999 * 108.79473 * 78.89656 * 19 18 17 34 34 H 1.08992 * 109.63290 * 334.44290 * 20 19 18 35 35 H 1.09000 * 109.78743 * 213.95267 * 20 19 18 36 36 H 1.09002 * 108.89218 * 159.25489 * 21 20 19 37 37 H 1.09000 * 108.89510 * 40.77393 * 21 20 19 38 38 H 1.09005 * 108.89581 * 301.18197 * 22 21 20 39 39 H 1.09004 * 108.89612 * 182.69517 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2816 1.0782 0.0000 4 6 3.5568 0.7013 -0.0058 5 6 4.6664 1.5549 -0.0131 6 1 5.6648 1.1428 -0.0170 7 6 4.4817 2.9450 -0.0143 8 7 3.2737 3.4436 -0.0091 9 14 5.9622 4.0840 -0.0233 10 1 7.2082 3.2760 -0.0277 11 1 5.9217 4.9388 -1.2369 12 1 5.9337 4.9425 1.1880 13 7 3.5954 -0.6736 -0.0036 14 1 4.3905 -1.2293 -0.0063 15 6 2.3017 -1.1063 0.0039 16 6 1.8383 -2.5403 0.0084 17 6 2.3597 -3.2439 -1.2153 18 6 1.3774 -4.3096 -1.7436 19 6 0.7250 -5.1355 -0.6184 20 6 1.7046 -5.5164 0.4583 21 6 1.6326 -4.4616 1.5815 22 6 2.3838 -3.2572 1.2604 23 1 -0.3633 0.0036 1.0276 24 1 -0.3633 0.8881 -0.5170 25 1 -0.3633 -0.8918 -0.5107 26 1 3.1459 4.4052 -0.0095 27 1 0.7488 -2.5730 0.0133 28 1 2.5410 -2.5055 -1.9963 29 1 3.3028 -3.7307 -0.9673 30 1 1.9153 -4.9850 -2.4089 31 1 0.5935 -3.8097 -2.3126 32 1 0.3019 -6.0438 -1.0476 33 1 -0.0786 -4.5490 -0.1730 34 1 2.7124 -5.5420 0.0442 35 1 1.4487 -6.4969 0.8599 36 1 2.0339 -4.8941 2.4981 37 1 0.5893 -4.1933 1.7474 38 1 3.4257 -3.5267 1.0871 39 1 2.3343 -2.5738 2.1081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261337212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:00 Heat of formation + Delta-G solvation = -2.006812 kcal Electronic energy + Delta-G solvation = -18523.277924 eV Core-core repulsion = 15850.199555 eV Total energy + Delta-G solvation = -2673.078369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.95527 -39.51962 -35.37014 -33.65555 -33.37268 -33.28178 -30.48873 -28.91863 -26.74687 -25.42123 -24.31258 -22.30284 -21.09849 -20.25516 -19.90006 -18.94297 -17.42339 -16.64145 -15.97039 -15.84035 -15.47524 -15.18860 -14.93331 -14.48668 -14.00908 -13.87054 -13.60460 -13.44176 -13.03669 -13.02421 -12.89864 -12.88657 -12.75571 -12.33087 -11.86123 -11.66969 -11.63734 -11.50786 -11.25931 -11.16842 -11.04772 -10.97348 -9.96084 -9.66214 -8.74041 -8.30253 -6.22330 1.36298 1.42958 1.58619 1.84622 2.28155 2.74063 3.07256 3.65255 3.70792 3.85681 4.00496 4.27586 4.36730 4.39873 4.42714 4.45397 4.51220 4.63218 4.72697 4.81115 4.97378 5.00665 5.06409 5.10897 5.15921 5.23632 5.28616 5.33771 5.38251 5.42312 5.44854 5.48951 5.51784 5.59630 5.63573 5.87908 6.21409 6.36824 6.77442 7.06802 7.57542 8.37110 8.66283 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.038275 B = 0.005429 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.377374 B = 5155.873930 C = 5399.952926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.043 4.043 3 N -0.554 5.554 4 C 0.337 3.663 5 C -0.498 4.498 6 H 0.085 0.915 7 C 0.032 3.968 8 N -0.795 5.795 9 Si 0.993 3.007 10 H -0.254 1.254 11 H -0.270 1.270 12 H -0.270 1.270 13 N -0.606 5.606 14 H 0.403 0.597 15 C -0.101 4.101 16 C 0.019 3.981 17 C -0.105 4.105 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.102 4.102 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.274 0.726 27 H 0.085 0.915 28 H 0.033 0.967 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 -15.381 -0.068 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.175 4.175 3 N -0.278 5.278 4 C 0.090 3.910 5 C -0.538 4.538 6 H 0.103 0.897 7 C -0.186 4.186 8 N -0.421 5.421 9 Si 0.814 3.186 10 H -0.177 1.177 11 H -0.195 1.195 12 H -0.195 1.195 13 N -0.214 5.214 14 H 0.239 0.761 15 C -0.214 4.214 16 C 0.000 4.000 17 C -0.143 4.143 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.140 4.140 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.762 -14.424 -0.067 14.687 hybrid contribution 1.307 0.047 -0.001 1.308 sum -1.455 -14.377 -0.068 14.451 Atomic orbital electron populations 1.19842 0.88477 1.01218 1.00900 1.21237 0.96980 0.89989 1.09293 1.71060 1.00148 1.27948 1.28622 1.20411 0.93480 0.79655 0.97499 1.18531 0.91410 0.91130 1.52744 0.89692 1.26703 0.99691 0.99762 0.92484 1.70175 1.24066 1.13335 1.34522 0.85014 0.77727 0.77488 0.78390 1.17722 1.19523 1.19532 1.43148 1.06919 1.07283 1.64002 0.76098 1.20904 0.84062 0.96048 1.20426 1.19120 0.99942 0.86021 0.94949 1.21392 0.99346 0.96986 0.96606 1.21898 0.98193 0.96584 0.98119 1.21338 0.98413 0.99687 0.95954 1.21321 0.99971 0.98277 0.95452 1.20468 1.00659 0.94934 0.99019 1.20449 0.99720 0.96902 0.96885 0.92459 0.93766 0.90439 0.91630 0.89665 0.94810 0.92399 0.91472 0.92600 0.90822 0.92256 0.92088 0.90434 0.91676 0.91932 0.93019 0.94635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.91 10.07 71.24 0.72 -1.19 16 2 C -0.04 -2.21 7.07 41.95 0.30 -1.91 16 3 N -0.55 -33.56 9.40 -182.22 -1.71 -35.27 16 4 C 0.34 19.47 7.61 133.59 1.02 20.48 16 5 C -0.50 -28.27 9.46 23.18 0.22 -28.05 16 6 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 7 C 0.03 1.75 5.50 85.35 0.47 2.22 16 8 N -0.79 -46.96 11.90 21.88 0.26 -46.70 16 9 Si 0.99 40.81 29.56 68.60 2.03 42.83 16 10 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 13 N -0.61 -28.90 6.25 -179.88 -1.13 -30.03 16 14 H 0.40 16.68 8.96 -92.70 -0.83 15.85 16 15 C -0.10 -4.47 5.41 41.38 0.22 -4.24 16 16 C 0.02 0.62 2.20 -11.94 -0.03 0.60 16 17 C -0.11 -3.02 4.91 30.21 0.15 -2.87 16 18 C -0.11 -2.42 5.85 31.39 0.18 -2.23 16 19 C -0.12 -2.14 5.32 30.14 0.16 -1.98 16 20 C -0.11 -2.04 5.61 30.20 0.17 -1.87 16 21 C -0.11 -2.45 5.26 28.74 0.15 -2.30 16 22 C -0.10 -2.90 4.68 28.73 0.13 -2.76 16 23 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.86 16 25 H 0.08 2.62 7.16 -2.39 -0.02 2.60 16 26 H 0.27 14.72 8.29 -92.70 -0.77 13.95 16 27 H 0.09 2.65 5.67 -2.39 -0.01 2.63 16 28 H 0.03 1.15 7.70 -2.39 -0.02 1.13 16 29 H 0.06 1.56 6.65 -2.39 -0.02 1.54 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.14 6.63 -2.39 -0.02 1.12 16 34 H 0.06 1.16 6.99 -2.39 -0.02 1.14 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.33 7.47 -2.39 -0.02 1.32 16 38 H 0.05 1.44 7.48 -2.38 -0.02 1.42 16 39 H 0.03 1.18 7.96 -2.38 -0.02 1.16 16 Total: -1.00 -69.74 303.18 3.52 -66.22 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.21 Total: 29.06 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.86 Total: -26.11 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -2.58 Total: -112.00 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -69.74 3.52 -66.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.214 kcal (2) G-P(sol) polarization free energy of solvation -69.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds