Wall clock time and date at job start Mon Mar 30 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47048 * 2 1 4 4 C 1.50701 * 109.46838 * 119.99450 * 2 1 3 5 5 N 1.36417 * 126.40516 * 299.95817 * 4 2 1 6 6 H 0.96996 * 126.55650 * 0.02562 * 5 4 2 7 7 C 1.37552 * 106.88501 * 180.02562 * 5 4 2 8 8 C 1.39993 * 125.95828 * 179.97438 * 7 5 4 9 9 H 1.07995 * 120.00399 * 0.02562 * 8 7 5 10 10 C 1.40240 * 119.99808 * 179.97438 * 8 7 5 11 11 N 1.30692 * 119.99825 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00245 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47275 * 89.99996 * 12 10 8 14 14 H 1.48506 * 109.47308 * 210.00559 * 12 10 8 15 15 H 1.48501 * 109.46861 * 330.00200 * 12 10 8 16 16 N 1.32981 * 108.07357 * 359.74095 * 7 5 4 17 17 C 1.32763 * 109.22591 * 0.42864 * 16 7 5 18 18 C 1.50696 * 125.69022 * 179.82718 * 17 16 7 19 19 C 1.54894 * 110.48422 * 302.93885 * 18 17 16 20 20 C 1.55238 * 102.58338 * 156.67616 * 19 18 17 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 H 1.08994 * 109.47224 * 300.00290 * 1 2 3 24 24 H 1.08996 * 109.47062 * 60.00264 * 1 2 3 25 25 H 1.09001 * 109.46805 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47224 * 239.99710 * 2 1 3 27 27 H 1.08997 * 109.47084 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46966 * 299.99757 * 3 2 1 29 29 H 1.09003 * 109.47453 * 59.99601 * 3 2 1 30 30 H 0.97001 * 119.99924 * 179.97438 * 11 10 8 31 31 H 1.09002 * 110.43350 * 180.39663 * 18 17 16 32 32 H 1.08996 * 110.75388 * 275.05970 * 19 18 17 33 33 H 1.08993 * 110.76071 * 38.44196 * 19 18 17 34 34 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 35 35 H 1.09006 * 110.46947 * 80.77225 * 20 19 18 36 36 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 37 37 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 38 38 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 39 39 H 1.08996 * 110.07773 * 119.30576 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7852 -0.3594 2.5255 6 1 1.2536 0.3931 2.8287 7 6 2.4342 -1.2768 3.3188 8 6 2.4457 -1.2907 4.7186 9 1 1.9102 -0.5325 5.2706 10 6 3.1517 -2.2899 5.4041 11 7 3.7992 -3.2077 4.7360 12 14 3.1664 -2.3090 7.2719 13 1 2.0267 -3.1217 7.7677 14 1 4.4416 -2.9006 7.7508 15 1 3.0429 -0.9199 7.7821 16 7 3.0445 -2.1510 2.5240 17 6 2.8184 -1.8225 1.2576 18 6 3.3394 -2.5605 0.0515 19 6 4.8854 -2.6452 0.0938 20 6 5.1810 -3.8804 -0.7990 21 6 4.0469 -4.8709 -0.4637 22 6 2.8759 -4.0317 0.0770 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 4.2879 -3.8987 5.2101 31 1 3.0089 -2.0723 -0.8654 32 1 5.3332 -1.7451 -0.3273 33 1 5.2355 -2.8121 1.1124 34 1 6.1502 -4.3103 -0.5461 35 1 5.1480 -3.6053 -1.8533 36 1 4.3812 -5.5782 0.2952 37 1 3.7393 -5.4055 -1.3624 38 1 2.6420 -4.3318 1.0984 39 1 1.9999 -4.1583 -0.5590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261341049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:30 Heat of formation + Delta-G solvation = 13.746070 kcal Electronic energy + Delta-G solvation = -18641.559594 eV Core-core repulsion = 15969.164322 eV Total energy + Delta-G solvation = -2672.395273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.04741 -37.05634 -34.75859 -33.05971 -30.94641 -28.64685 -27.94344 -27.25558 -26.70646 -24.71416 -21.11014 -20.51485 -19.74176 -19.15403 -17.89814 -17.04118 -15.44032 -15.16328 -14.56281 -14.06530 -14.03648 -13.40720 -13.22838 -12.92708 -12.59863 -12.30955 -12.24713 -11.81042 -11.35442 -11.15149 -10.87243 -10.72274 -10.65510 -10.58857 -10.49650 -10.37052 -10.32506 -10.30099 -10.06024 -9.91645 -9.61244 -9.12176 -7.92076 -7.63831 -6.79164 -6.32523 -4.17406 3.08372 3.19173 3.21282 3.68342 4.08313 4.67137 4.89498 5.33089 5.37486 5.40249 5.42681 5.54709 5.71769 5.77632 5.96175 6.00044 6.13804 6.16579 6.19001 6.21335 6.22265 6.30014 6.32090 6.42453 6.54249 6.56301 6.65448 6.66082 6.72235 6.73493 6.95783 7.11088 7.22394 7.30723 7.52013 7.78405 8.16328 8.35796 8.67989 9.06325 9.51665 10.34796 10.60384 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016404 B = 0.008753 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.475393 B = 3198.001888 C = 4495.323329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.002 4.002 3 C -0.139 4.139 4 C -0.133 4.133 5 N -0.616 5.616 6 H 0.390 0.610 7 C 0.375 3.625 8 C -0.467 4.467 9 H 0.074 0.926 10 C 0.084 3.916 11 N -0.742 5.742 12 Si 0.907 3.093 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.267 1.267 16 N -0.501 5.501 17 C 0.028 3.972 18 C 0.002 3.998 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.111 4.111 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.269 0.731 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 1.959 -7.871 8.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 C -0.197 4.197 4 C -0.246 4.246 5 N -0.223 5.223 6 H 0.224 0.776 7 C 0.130 3.870 8 C -0.507 4.507 9 H 0.092 0.908 10 C -0.139 4.139 11 N -0.367 5.367 12 Si 0.732 3.268 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.191 1.191 16 N -0.223 5.223 17 C -0.106 4.106 18 C -0.017 4.017 19 C -0.147 4.147 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.149 4.149 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.697 1.042 -7.684 7.786 hybrid contribution -0.812 1.104 0.833 1.604 sum -1.509 2.146 -6.851 7.336 Atomic orbital electron populations 1.21825 0.96376 1.01324 1.00179 1.19235 0.93920 0.94217 0.94783 1.21827 1.01125 0.96578 1.00179 1.20042 1.14977 1.04722 0.84827 1.43148 1.46207 1.27251 1.05662 0.77643 1.20084 0.90155 0.84435 0.92280 1.18043 1.32355 1.12965 0.87366 0.90802 1.25619 0.94115 0.94578 0.99594 1.70011 1.21110 1.09369 1.36212 0.86368 0.78127 0.79102 0.83239 1.19838 1.20406 1.19086 1.71098 1.27075 1.26344 0.97755 1.20225 1.00947 0.95129 0.94331 1.20050 0.94303 0.93806 0.93576 1.22535 0.95630 0.95901 1.00642 1.22404 0.97971 0.96794 0.98930 1.22086 0.96077 0.97947 0.99614 1.22112 0.96276 0.94621 1.01893 0.93647 0.93696 0.92855 0.90833 0.92853 0.93705 0.93642 0.91965 0.92059 0.93041 0.89940 0.92536 0.92674 0.92217 0.93128 0.90336 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.18 37.16 0.34 -1.81 16 2 C 0.00 -0.03 3.29 -91.77 -0.30 -0.33 16 3 C -0.14 -2.15 9.17 37.16 0.34 -1.81 16 4 C -0.13 -2.91 5.76 -81.28 -0.47 -3.37 16 5 N -0.62 -14.25 6.26 -8.20 -0.05 -14.30 16 6 H 0.39 7.96 8.96 -40.82 -0.37 7.59 16 7 C 0.38 10.21 7.61 -155.59 -1.18 9.02 16 8 C -0.47 -12.65 9.46 -38.17 -0.36 -13.01 16 9 H 0.07 1.87 7.85 -52.49 -0.41 1.45 16 10 C 0.08 2.21 5.50 -17.28 -0.10 2.12 16 11 N -0.74 -20.51 11.90 55.56 0.66 -19.85 16 12 Si 0.91 19.36 29.56 -169.99 -5.03 14.34 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 16 N -0.50 -13.80 9.06 -8.95 -0.08 -13.88 16 17 C 0.03 0.67 5.59 -82.92 -0.46 0.20 16 18 C 0.00 0.04 3.25 -90.11 -0.29 -0.25 16 19 C -0.11 -2.07 6.34 -24.55 -0.16 -2.22 16 20 C -0.12 -1.93 6.84 -24.88 -0.17 -2.10 16 21 C -0.12 -1.94 6.80 -25.62 -0.17 -2.11 16 22 C -0.11 -2.11 6.36 -25.62 -0.16 -2.27 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.22 6.44 -51.93 -0.33 0.89 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.27 6.85 8.29 -40.82 -0.34 6.51 16 31 H 0.06 1.11 6.47 -51.93 -0.34 0.78 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.85 7.93 -51.93 -0.41 1.44 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.77 7.66 -51.93 -0.40 1.38 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -29.30 314.57 -9.37 -38.67 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.47 Total: 8.24 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.15 Total: -17.95 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.53 Total: -48.03 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.30 -9.37 -38.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.420 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds