Wall clock time and date at job start Mon Mar 30 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47048 * 2 1 4 4 C 1.50701 * 109.46838 * 119.99450 * 2 1 3 5 5 N 1.36417 * 126.40516 * 299.95817 * 4 2 1 6 6 H 0.96996 * 126.55650 * 0.02562 * 5 4 2 7 7 C 1.37552 * 106.88501 * 180.02562 * 5 4 2 8 8 C 1.39993 * 125.95828 * 179.97438 * 7 5 4 9 9 H 1.07995 * 120.00399 * 0.02562 * 8 7 5 10 10 C 1.40240 * 119.99808 * 179.97438 * 8 7 5 11 11 N 1.30692 * 119.99825 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00245 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47275 * 89.99996 * 12 10 8 14 14 H 1.48506 * 109.47308 * 210.00559 * 12 10 8 15 15 H 1.48501 * 109.46861 * 330.00200 * 12 10 8 16 16 N 1.32981 * 108.07357 * 359.74095 * 7 5 4 17 17 C 1.32763 * 109.22591 * 0.42864 * 16 7 5 18 18 C 1.50696 * 125.69022 * 179.82718 * 17 16 7 19 19 C 1.54894 * 110.48422 * 302.93885 * 18 17 16 20 20 C 1.55238 * 102.58338 * 156.67616 * 19 18 17 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 H 1.08994 * 109.47224 * 300.00290 * 1 2 3 24 24 H 1.08996 * 109.47062 * 60.00264 * 1 2 3 25 25 H 1.09001 * 109.46805 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47224 * 239.99710 * 2 1 3 27 27 H 1.08997 * 109.47084 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46966 * 299.99757 * 3 2 1 29 29 H 1.09003 * 109.47453 * 59.99601 * 3 2 1 30 30 H 0.97001 * 119.99924 * 179.97438 * 11 10 8 31 31 H 1.09002 * 110.43350 * 180.39663 * 18 17 16 32 32 H 1.08996 * 110.75388 * 275.05970 * 19 18 17 33 33 H 1.08993 * 110.76071 * 38.44196 * 19 18 17 34 34 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 35 35 H 1.09006 * 110.46947 * 80.77225 * 20 19 18 36 36 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 37 37 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 38 38 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 39 39 H 1.08996 * 110.07773 * 119.30576 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7852 -0.3594 2.5255 6 1 1.2536 0.3931 2.8287 7 6 2.4342 -1.2768 3.3188 8 6 2.4457 -1.2907 4.7186 9 1 1.9102 -0.5325 5.2706 10 6 3.1517 -2.2899 5.4041 11 7 3.7992 -3.2077 4.7360 12 14 3.1664 -2.3090 7.2719 13 1 2.0267 -3.1217 7.7677 14 1 4.4416 -2.9006 7.7508 15 1 3.0429 -0.9199 7.7821 16 7 3.0445 -2.1510 2.5240 17 6 2.8184 -1.8225 1.2576 18 6 3.3394 -2.5605 0.0515 19 6 4.8854 -2.6452 0.0938 20 6 5.1810 -3.8804 -0.7990 21 6 4.0469 -4.8709 -0.4637 22 6 2.8759 -4.0317 0.0770 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 4.2879 -3.8987 5.2101 31 1 3.0089 -2.0723 -0.8654 32 1 5.3332 -1.7451 -0.3273 33 1 5.2355 -2.8121 1.1124 34 1 6.1502 -4.3103 -0.5461 35 1 5.1480 -3.6053 -1.8533 36 1 4.3812 -5.5782 0.2952 37 1 3.7393 -5.4055 -1.3624 38 1 2.6420 -4.3318 1.0984 39 1 1.9999 -4.1583 -0.5590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261341049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:29 Heat of formation + Delta-G solvation = -2.286810 kcal Electronic energy + Delta-G solvation = -18642.254832 eV Core-core repulsion = 15969.164322 eV Total energy + Delta-G solvation = -2673.090511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.88571 -38.54072 -36.26172 -34.94775 -32.72258 -30.43907 -29.40530 -29.00396 -27.93994 -26.45116 -22.77211 -22.22447 -21.11661 -20.86143 -19.67151 -18.83979 -17.32078 -16.62869 -16.25155 -15.56255 -15.46073 -15.12476 -14.75267 -14.52996 -14.09855 -13.89651 -13.72333 -13.13485 -13.01913 -12.83903 -12.55323 -12.17378 -12.06558 -12.00718 -12.00068 -11.92154 -11.83354 -11.80408 -11.72614 -11.30060 -11.13682 -11.03441 -9.84028 -9.54588 -8.68571 -8.27066 -6.17286 1.37268 1.42108 1.55586 1.88406 2.28414 2.77886 3.11032 3.65607 3.89849 4.00142 4.06321 4.10013 4.20154 4.41994 4.57352 4.66666 4.72130 4.77116 4.80063 4.85248 4.86699 4.95292 4.98727 5.00893 5.08621 5.20538 5.22883 5.28116 5.33170 5.37378 5.44868 5.49813 5.55017 5.62947 5.79477 5.92051 6.27038 6.40881 6.81799 7.11467 7.61967 8.44446 8.68416 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.016404 B = 0.008753 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.475393 B = 3198.001888 C = 4495.323329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.004 4.004 3 C -0.134 4.134 4 C -0.113 4.113 5 N -0.608 5.608 6 H 0.401 0.599 7 C 0.333 3.667 8 C -0.500 4.500 9 H 0.081 0.919 10 C 0.035 3.965 11 N -0.789 5.789 12 Si 0.987 3.013 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.257 1.257 16 N -0.534 5.534 17 C -0.014 4.014 18 C 0.002 3.998 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.108 4.108 23 H 0.040 0.960 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.271 0.729 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 2.877 -9.829 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.023 4.023 3 C -0.191 4.191 4 C -0.227 4.227 5 N -0.215 5.215 6 H 0.237 0.763 7 C 0.086 3.914 8 C -0.540 4.540 9 H 0.099 0.901 10 C -0.184 4.184 11 N -0.415 5.415 12 Si 0.808 3.192 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.181 1.181 16 N -0.256 5.256 17 C -0.147 4.147 18 C -0.018 4.018 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.146 4.146 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.306 1.982 -9.664 9.951 hybrid contribution -0.694 0.900 1.310 1.735 sum -2.000 2.882 -8.353 9.060 Atomic orbital electron populations 1.21760 0.94568 1.01028 1.01752 1.19433 0.95348 0.95044 0.92500 1.21761 1.00330 0.95272 1.01747 1.20907 1.12377 1.03622 0.85773 1.43171 1.45462 1.26893 1.05986 0.76314 1.20401 0.92018 0.85962 0.93009 1.18440 1.33538 1.13992 0.87984 0.90103 1.26599 0.93219 0.93729 1.04868 1.70164 1.22500 1.10400 1.38420 0.85151 0.78232 0.79410 0.76370 1.19212 1.19875 1.18124 1.70999 1.27678 1.27271 0.99696 1.20947 1.02516 0.96796 0.94428 1.20185 0.94731 0.94001 0.92847 1.22440 0.95166 0.98219 0.98830 1.22373 0.98057 0.94664 0.99830 1.22071 0.95106 0.97630 1.00494 1.22038 0.98324 0.94765 0.99502 0.94066 0.90166 0.94116 0.89564 0.94076 0.90180 0.94063 0.91851 0.89501 0.91962 0.94759 0.91639 0.89446 0.93562 0.89740 0.95293 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.18 71.98 0.66 -3.06 16 2 C 0.00 -0.12 3.29 -11.54 -0.04 -0.15 16 3 C -0.13 -3.71 9.17 71.98 0.66 -3.05 16 4 C -0.11 -4.94 5.76 41.38 0.24 -4.71 16 5 N -0.61 -28.68 6.26 -179.87 -1.13 -29.80 16 6 H 0.40 16.53 8.96 -92.71 -0.83 15.70 16 7 C 0.33 18.95 7.61 133.59 1.02 19.96 16 8 C -0.50 -28.20 9.46 23.18 0.22 -27.98 16 9 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 10 C 0.03 1.88 5.50 85.35 0.47 2.35 16 11 N -0.79 -46.04 11.90 21.88 0.26 -45.78 16 12 Si 0.99 41.00 29.56 68.60 2.03 43.02 16 13 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 14 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 15 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 16 N -0.53 -31.00 9.06 -182.22 -1.65 -32.65 16 17 C -0.01 -0.70 5.59 41.95 0.23 -0.47 16 18 C 0.00 0.06 3.25 -10.46 -0.03 0.03 16 19 C -0.11 -4.12 6.34 32.01 0.20 -3.92 16 20 C -0.11 -3.27 6.84 31.79 0.22 -3.05 16 21 C -0.12 -3.59 6.80 31.32 0.21 -3.37 16 22 C -0.11 -4.12 6.36 31.32 0.20 -3.92 16 23 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 2.57 6.44 -2.39 -0.02 2.55 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.27 14.59 8.29 -92.71 -0.77 13.82 16 31 H 0.09 2.94 6.47 -2.39 -0.02 2.92 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.03 1.61 7.93 -2.39 -0.02 1.59 16 34 H 0.06 1.80 8.14 -2.38 -0.02 1.79 16 35 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.03 1.36 7.66 -2.39 -0.02 1.35 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -68.41 314.57 3.97 -64.44 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.20 Total: 32.11 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.26 Total: -31.34 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -2.52 Total: -108.23 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -68.41 3.97 -64.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.149 kcal (2) G-P(sol) polarization free energy of solvation -68.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds