Wall clock time and date at job start Mon Mar 30 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31811 * 119.11939 * 2 1 4 4 C 1.32318 * 120.81812 * 179.97438 * 3 2 1 5 5 C 1.38620 * 119.10385 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.80195 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47460 * 93.74368 * 6 5 4 8 8 C 1.50704 * 109.47316 * 184.87884 * 7 6 5 9 9 H 1.08000 * 119.99983 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00089 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00174 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99834 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47433 * 89.99244 * 12 10 8 14 14 H 1.48497 * 109.46861 * 209.99853 * 12 10 8 15 15 H 1.48510 * 109.46964 * 329.99059 * 12 10 8 16 16 C 1.38579 * 118.39617 * 0.02562 * 5 4 3 17 17 C 1.50707 * 120.44659 * 180.02562 * 16 5 4 18 18 C 1.52995 * 109.47174 * 274.25976 * 17 16 5 19 19 C 1.52997 * 109.47581 * 174.29890 * 18 17 16 20 20 C 1.53002 * 109.47026 * 294.29983 * 18 17 16 21 21 N 1.31776 * 119.12597 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47473 * 269.97507 * 1 2 3 23 23 H 1.08997 * 109.47313 * 29.98201 * 1 2 3 24 24 H 1.09003 * 109.46826 * 149.97818 * 1 2 3 25 25 H 1.08005 * 120.45114 * 180.02562 * 4 3 2 26 26 H 1.09007 * 109.46933 * 213.74392 * 6 5 4 27 27 H 1.09000 * 109.47372 * 333.73788 * 6 5 4 28 28 H 1.09002 * 109.47337 * 304.87562 * 7 6 5 29 29 H 1.09004 * 109.47325 * 64.88317 * 7 6 5 30 30 H 0.96999 * 120.00466 * 180.02562 * 11 10 8 31 31 H 1.09002 * 109.47158 * 34.25885 * 17 16 5 32 32 H 1.08997 * 109.47102 * 154.25701 * 17 16 5 33 33 H 1.09007 * 109.47347 * 54.29318 * 18 17 16 34 34 H 1.09003 * 109.46761 * 59.99361 * 19 18 17 35 35 H 1.08997 * 109.47203 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.46871 * 299.99908 * 19 18 17 37 37 H 1.09003 * 109.46752 * 300.00294 * 20 18 17 38 38 H 1.09002 * 109.47390 * 59.99809 * 20 18 17 39 39 H 1.09000 * 109.47560 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4710 1.1907 0.0005 5 6 4.1808 0.0001 0.0005 6 6 5.6878 0.0001 0.0017 7 6 6.1968 -0.0947 1.4413 8 6 7.6989 0.0257 1.4521 9 1 8.2368 0.1564 0.5247 10 6 8.3866 -0.0319 2.6457 11 7 7.7317 -0.1916 3.7749 12 14 10.2486 0.1181 2.6591 13 1 10.6291 1.5471 2.7946 14 1 10.7990 -0.6515 3.8036 15 1 10.7978 -0.4222 1.3894 16 6 3.4712 -1.1902 -0.0006 17 6 4.1962 -2.5115 -0.0001 18 6 4.5371 -2.9068 -1.4382 19 6 5.3952 -4.1734 -1.4294 20 6 3.2453 -3.1714 -2.2142 21 7 2.1483 -1.1511 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 3.9905 2.1376 0.0009 26 1 6.0516 -0.8542 -0.5694 27 1 6.0515 0.9219 -0.4524 28 1 5.7634 0.7111 2.0337 29 1 5.9063 -1.0553 1.8669 30 1 8.2155 -0.2318 4.6147 31 1 5.1149 -2.4216 0.5795 32 1 3.5589 -3.2754 0.4454 33 1 5.0888 -2.0974 -1.9165 34 1 4.8434 -4.9827 -0.9511 35 1 5.6376 -4.4552 -2.4540 36 1 6.3155 -3.9848 -0.8765 37 1 2.6935 -3.9807 -1.7360 38 1 2.6338 -2.2690 -2.2206 39 1 3.4880 -3.4534 -3.2387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261350117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:54 Heat of formation + Delta-G solvation = 5.030161 kcal Electronic energy + Delta-G solvation = -18164.879795 eV Core-core repulsion = 15492.106572 eV Total energy + Delta-G solvation = -2672.773223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87630 -36.71687 -34.70879 -33.15538 -32.77594 -30.71312 -28.11715 -27.38763 -26.99616 -24.70402 -22.99689 -22.02301 -20.35664 -19.82479 -17.53103 -16.43883 -15.92362 -15.05923 -14.63749 -14.51420 -13.86150 -13.80222 -13.77589 -13.00997 -12.84069 -12.60060 -12.32671 -12.23372 -12.14970 -12.01825 -11.56776 -11.39741 -11.03715 -10.99144 -10.88728 -10.76028 -10.55091 -10.38015 -10.04544 -9.99447 -9.75680 -9.17367 -8.78378 -8.44337 -8.40691 -6.06423 -4.10264 1.33536 1.46135 3.28146 3.34992 3.37464 4.06452 4.21574 4.40600 4.43541 4.86259 5.05731 5.08123 5.24540 5.29555 5.39425 5.41048 5.61547 5.63773 5.66597 5.74150 5.80610 5.88197 5.95417 6.04102 6.07378 6.10762 6.20778 6.34408 6.43728 6.46062 6.54715 6.58843 6.76691 6.96913 7.41976 7.58269 7.66996 7.91566 8.31046 8.48380 8.96299 9.54584 11.04487 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.006340 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.551101 B = 4415.397796 C = 5378.023109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.289 3.711 3 N -0.525 5.525 4 C 0.142 3.858 5 C -0.163 4.163 6 C -0.072 4.072 7 C 0.031 3.969 8 C -0.523 4.523 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.181 3.819 17 C -0.073 4.073 18 C -0.088 4.088 19 C -0.146 4.146 20 C -0.142 4.142 21 N -0.516 5.516 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.165 0.835 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.016 0.984 29 H 0.019 0.981 30 H 0.261 0.739 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 -3.795 -9.720 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.021 3.979 3 N -0.239 5.239 4 C -0.023 4.023 5 C -0.167 4.167 6 C -0.111 4.111 7 C -0.006 4.006 8 C -0.561 4.561 9 H 0.075 0.925 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.198 1.198 16 C 0.035 3.965 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.203 4.203 20 C -0.199 4.199 21 N -0.230 5.230 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.182 0.818 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.499 -3.808 -9.524 14.678 hybrid contribution 1.965 0.257 0.286 2.002 sum -8.534 -3.552 -9.238 13.068 Atomic orbital electron populations 1.20435 0.86470 1.03375 1.03322 1.23017 0.97746 0.83772 0.93326 1.68148 1.10255 1.30492 1.15049 1.23109 0.89113 0.98513 0.91584 1.21952 1.00510 0.94257 0.99963 1.20780 0.86067 1.02040 1.02207 1.19084 0.95689 0.97488 0.88357 1.21194 0.91730 1.50280 0.92910 0.92456 1.25015 0.98457 0.95153 0.95646 1.69961 1.35635 1.49806 0.97808 0.86594 0.85611 0.78136 0.77679 1.20630 1.21211 1.19786 1.21487 0.88916 0.95630 0.90479 1.20782 1.00600 0.91823 0.97908 1.21037 0.96653 0.98425 0.94597 1.21821 1.00009 0.96886 1.01590 1.21821 0.97149 1.01811 0.99128 1.68020 1.09701 1.30386 1.14934 0.90245 0.90218 0.90214 0.81820 0.91356 0.91672 0.96580 0.96312 0.92893 0.88125 0.90099 0.90934 0.92699 0.92791 0.91867 0.92586 0.92880 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.32 36.00 0.37 -0.55 16 2 C 0.29 4.76 7.64 -157.20 -1.20 3.55 16 3 N -0.53 -9.17 10.33 -10.72 -0.11 -9.28 16 4 C 0.14 2.48 11.00 -17.20 -0.19 2.30 16 5 C -0.16 -2.98 5.17 -104.36 -0.54 -3.52 16 6 C -0.07 -1.41 4.64 -27.89 -0.13 -1.54 16 7 C 0.03 0.76 4.85 -27.88 -0.14 0.62 16 8 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 9 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 12 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 C 0.18 3.18 5.30 -82.24 -0.44 2.74 16 17 C -0.07 -1.15 4.32 -27.88 -0.12 -1.27 16 18 C -0.09 -1.18 2.70 -90.62 -0.24 -1.43 16 19 C -0.15 -1.73 9.19 37.16 0.34 -1.39 16 20 C -0.14 -1.78 8.99 37.16 0.33 -1.44 16 21 N -0.52 -8.88 9.61 -6.99 -0.07 -8.95 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.16 2.53 8.06 -52.48 -0.42 2.10 16 26 H 0.07 1.26 5.92 -51.93 -0.31 0.95 16 27 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.49 6.94 -51.93 -0.36 0.13 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.10 1.75 5.86 -51.93 -0.30 1.45 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.03 7.10 -51.93 -0.37 0.66 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.74 6.90 -51.93 -0.36 0.39 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -30.13 319.12 -8.32 -38.46 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.31 Total: -0.70 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.36 Total: -14.82 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.56 Total: -43.79 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.13 -8.32 -38.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261350117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.486 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds