Wall clock time and date at job start Mon Mar 30 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 C 1.50693 * 109.47547 * 120.00164 * 2 1 3 5 5 N 1.36889 * 126.59189 * 300.02636 * 4 2 1 6 6 H 0.97006 * 126.39129 * 359.94236 * 5 4 2 7 7 C 1.35041 * 107.20798 * 179.97438 * 5 4 2 8 8 C 1.50702 * 125.65156 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47168 * 124.99485 * 8 7 5 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 89.99934 * 13 11 9 15 15 H 1.48499 * 109.47026 * 209.99782 * 13 11 9 16 16 H 1.48496 * 109.47474 * 329.99818 * 13 11 9 17 17 N 1.30502 * 108.69905 * 0.22319 * 7 5 4 18 18 C 1.34128 * 109.25781 * 359.63477 * 17 7 5 19 19 C 1.50698 * 125.99059 * 180.11595 * 18 17 7 20 20 C 1.53781 * 113.61598 * 39.43227 * 19 18 17 21 21 C 1.53955 * 87.01952 * 220.04824 * 20 19 18 22 22 C 1.53780 * 113.61326 * 301.82483 * 19 18 17 23 23 H 1.08998 * 109.47172 * 299.99414 * 1 2 3 24 24 H 1.09004 * 109.47421 * 60.00242 * 1 2 3 25 25 H 1.09008 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.09011 * 109.47206 * 240.00007 * 2 1 3 27 27 H 1.09004 * 109.46748 * 300.00170 * 3 2 1 28 28 H 1.08998 * 109.47109 * 60.00134 * 3 2 1 29 29 H 1.09000 * 109.47023 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46490 * 4.99602 * 8 7 5 31 31 H 1.08999 * 109.46382 * 244.99819 * 8 7 5 32 32 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 33 33 H 1.09005 * 112.84849 * 170.63001 * 19 18 17 34 34 H 1.09002 * 113.61188 * 334.56977 * 20 19 18 35 35 H 1.08997 * 113.61178 * 105.47062 * 20 19 18 36 36 H 1.08996 * 113.53956 * 270.81234 * 21 20 19 37 37 H 1.09004 * 113.73986 * 139.93914 * 21 20 19 38 38 H 1.09002 * 113.61528 * 254.53122 * 22 19 18 39 39 H 1.09000 * 113.61227 * 25.43187 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7859 -0.3627 2.5312 6 1 1.2543 0.3897 2.8350 7 6 2.4216 -1.2622 3.3125 8 6 2.4262 -1.2687 4.8195 9 6 1.9474 -2.6080 5.3175 10 1 1.6674 -3.3774 4.6132 11 6 1.8659 -2.8508 6.6723 12 7 2.2008 -1.9116 7.5299 13 14 1.2718 -4.5107 7.2897 14 1 2.4320 -5.4241 7.4476 15 1 0.5956 -4.3382 8.6004 16 1 0.3158 -5.0893 6.3118 17 7 3.0356 -2.1218 2.5463 18 6 2.8096 -1.8098 1.2615 19 6 3.3379 -2.5550 0.0630 20 6 3.3290 -4.0832 0.2348 21 6 4.6957 -4.0903 -0.4740 22 6 4.8725 -2.6451 0.0209 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.6765 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.7633 -0.4859 5.1881 31 1 3.4386 -1.0875 5.1804 32 1 2.5090 -1.0495 7.2093 33 1 2.8944 -2.2183 -0.8740 34 1 3.3749 -4.4059 1.2749 35 1 2.5408 -4.5814 -0.3297 36 1 4.6233 -4.1747 -1.5583 37 1 5.4106 -4.7904 -0.0417 38 1 5.3286 -1.9839 -0.7160 39 1 5.3411 -2.5739 1.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261350725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:27 Heat of formation + Delta-G solvation = 40.047052 kcal Electronic energy + Delta-G solvation = -18231.993196 eV Core-core repulsion = 15560.738419 eV Total energy + Delta-G solvation = -2671.254777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.56188 -38.08029 -35.46503 -33.51123 -31.63242 -29.88451 -27.22774 -27.18884 -25.24904 -24.77946 -23.27748 -21.25150 -20.15104 -19.68477 -18.52918 -16.93334 -16.22511 -15.43465 -14.71811 -14.58039 -14.40550 -13.85086 -13.70781 -13.25456 -12.91793 -12.35913 -12.24505 -12.05457 -12.03452 -11.95893 -11.62899 -11.28970 -11.16973 -10.97171 -10.63028 -10.52050 -10.32513 -10.17491 -10.14263 -10.06913 -9.07690 -8.98487 -8.76792 -8.38047 -7.33454 -6.37452 -4.07072 2.67398 3.47204 3.50326 3.66428 3.76524 3.85615 4.56805 4.82569 4.89503 4.96367 5.02912 5.04441 5.15720 5.30077 5.39253 5.42953 5.52078 5.53390 5.73320 5.74761 5.81989 5.91735 5.97030 6.07777 6.10672 6.14181 6.16983 6.21114 6.28221 6.35857 6.57298 6.84687 6.87464 7.01049 7.18434 7.48559 7.97697 8.18883 8.49667 8.84305 9.02406 9.60923 11.01523 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.006693 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.489758 B = 4182.412608 C = 5114.900390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.014 4.014 3 C -0.144 4.144 4 C -0.050 4.050 5 N -0.572 5.572 6 H 0.408 0.592 7 C 0.267 3.733 8 C 0.084 3.916 9 C -0.579 4.579 10 H 0.058 0.942 11 C 0.015 3.985 12 N -0.914 5.914 13 Si 1.075 2.925 14 H -0.286 1.286 15 H -0.285 1.285 16 H -0.289 1.289 17 N -0.482 5.482 18 C 0.014 3.986 19 C -0.026 4.026 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.126 4.126 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.021 0.979 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 3.602 -16.892 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.164 4.164 5 N -0.174 5.174 6 H 0.245 0.755 7 C 0.002 3.998 8 C 0.045 3.955 9 C -0.618 4.618 10 H 0.076 0.924 11 C -0.188 4.188 12 N -0.551 5.551 13 Si 0.904 3.096 14 H -0.213 1.213 15 H -0.211 1.211 16 H -0.215 1.215 17 N -0.201 5.201 18 C -0.115 4.115 19 C -0.046 4.046 20 C -0.164 4.164 21 C -0.181 4.181 22 C -0.163 4.163 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.149 2.033 -15.275 15.410 hybrid contribution -0.497 2.040 -1.488 2.574 sum -0.646 4.074 -16.762 17.262 Atomic orbital electron populations 1.21856 0.94929 1.02155 1.01352 1.19510 0.95129 0.95024 0.93653 1.21849 1.01459 0.95524 1.01356 1.20594 1.08651 1.01895 0.85275 1.43226 1.42239 1.25930 1.06021 0.75548 1.24060 0.92990 0.86325 0.96378 1.17911 0.97873 0.99271 0.80418 1.21845 1.47611 0.98140 0.94222 0.92412 1.25873 0.95177 1.04629 0.93079 1.70788 1.41778 1.05419 1.37106 0.83441 0.76527 0.74182 0.75489 1.21268 1.21078 1.21491 1.70127 1.24235 1.25608 1.00090 1.20193 1.02014 0.96030 0.93302 1.20720 0.95600 0.94776 0.93470 1.22920 0.96313 0.95149 1.02000 1.22852 0.98260 0.97501 0.99527 1.22878 0.95654 0.96147 1.01657 0.93134 0.92464 0.92294 0.89459 0.92448 0.93191 0.92388 0.96146 0.94548 0.92317 0.89239 0.88736 0.92317 0.90851 0.91661 0.92315 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.17 37.15 0.34 -1.32 16 2 C -0.01 -0.17 3.29 -91.78 -0.30 -0.47 16 3 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 4 C -0.05 -0.84 5.75 -81.60 -0.47 -1.31 16 5 N -0.57 -10.58 6.15 -6.54 -0.04 -10.62 16 6 H 0.41 6.44 8.96 -40.82 -0.37 6.07 16 7 C 0.27 6.12 7.37 -155.41 -1.15 4.98 16 8 C 0.08 2.16 4.91 -29.04 -0.14 2.02 16 9 C -0.58 -16.72 9.06 -34.44 -0.31 -17.03 16 10 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 11 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 12 N -0.91 -27.61 13.65 55.43 0.76 -26.86 16 13 Si 1.08 25.84 29.90 -169.99 -5.08 20.76 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 N -0.48 -11.14 10.86 -7.07 -0.08 -11.22 16 18 C 0.01 0.27 6.12 -82.85 -0.51 -0.24 16 19 C -0.03 -0.41 4.04 -90.96 -0.37 -0.77 16 20 C -0.13 -1.92 7.64 -25.83 -0.20 -2.12 16 21 C -0.14 -1.84 8.09 -25.83 -0.21 -2.05 16 22 C -0.13 -1.80 7.63 -25.92 -0.20 -2.00 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.09 1.00 6.59 -51.92 -0.34 0.66 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.02 0.52 8.00 -51.93 -0.42 0.10 16 31 H 0.04 0.99 8.01 -51.93 -0.42 0.57 16 32 H 0.27 7.92 7.22 -40.82 -0.29 7.63 16 33 H 0.09 1.17 6.74 -51.93 -0.35 0.82 16 34 H 0.09 1.73 7.81 -51.93 -0.41 1.33 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -31.85 320.18 -9.32 -41.18 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.44 Total: 3.12 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.26 Total: -21.19 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.64 Total: -48.69 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.85 -9.32 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261350725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.223 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds