Wall clock time and date at job start Mon Mar 30 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 C 1.50693 * 109.47547 * 120.00164 * 2 1 3 5 5 N 1.36889 * 126.59189 * 300.02636 * 4 2 1 6 6 H 0.97006 * 126.39129 * 359.94236 * 5 4 2 7 7 C 1.35041 * 107.20798 * 179.97438 * 5 4 2 8 8 C 1.50702 * 125.65156 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47168 * 124.99485 * 8 7 5 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 89.99934 * 13 11 9 15 15 H 1.48499 * 109.47026 * 209.99782 * 13 11 9 16 16 H 1.48496 * 109.47474 * 329.99818 * 13 11 9 17 17 N 1.30502 * 108.69905 * 0.22319 * 7 5 4 18 18 C 1.34128 * 109.25781 * 359.63477 * 17 7 5 19 19 C 1.50698 * 125.99059 * 180.11595 * 18 17 7 20 20 C 1.53781 * 113.61598 * 39.43227 * 19 18 17 21 21 C 1.53955 * 87.01952 * 220.04824 * 20 19 18 22 22 C 1.53780 * 113.61326 * 301.82483 * 19 18 17 23 23 H 1.08998 * 109.47172 * 299.99414 * 1 2 3 24 24 H 1.09004 * 109.47421 * 60.00242 * 1 2 3 25 25 H 1.09008 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.09011 * 109.47206 * 240.00007 * 2 1 3 27 27 H 1.09004 * 109.46748 * 300.00170 * 3 2 1 28 28 H 1.08998 * 109.47109 * 60.00134 * 3 2 1 29 29 H 1.09000 * 109.47023 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46490 * 4.99602 * 8 7 5 31 31 H 1.08999 * 109.46382 * 244.99819 * 8 7 5 32 32 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 33 33 H 1.09005 * 112.84849 * 170.63001 * 19 18 17 34 34 H 1.09002 * 113.61188 * 334.56977 * 20 19 18 35 35 H 1.08997 * 113.61178 * 105.47062 * 20 19 18 36 36 H 1.08996 * 113.53956 * 270.81234 * 21 20 19 37 37 H 1.09004 * 113.73986 * 139.93914 * 21 20 19 38 38 H 1.09002 * 113.61528 * 254.53122 * 22 19 18 39 39 H 1.09000 * 113.61227 * 25.43187 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7859 -0.3627 2.5312 6 1 1.2543 0.3897 2.8350 7 6 2.4216 -1.2622 3.3125 8 6 2.4262 -1.2687 4.8195 9 6 1.9474 -2.6080 5.3175 10 1 1.6674 -3.3774 4.6132 11 6 1.8659 -2.8508 6.6723 12 7 2.2008 -1.9116 7.5299 13 14 1.2718 -4.5107 7.2897 14 1 2.4320 -5.4241 7.4476 15 1 0.5956 -4.3382 8.6004 16 1 0.3158 -5.0893 6.3118 17 7 3.0356 -2.1218 2.5463 18 6 2.8096 -1.8098 1.2615 19 6 3.3379 -2.5550 0.0630 20 6 3.3290 -4.0832 0.2348 21 6 4.6957 -4.0903 -0.4740 22 6 4.8725 -2.6451 0.0209 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.6765 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.7633 -0.4859 5.1881 31 1 3.4386 -1.0875 5.1804 32 1 2.5090 -1.0495 7.2093 33 1 2.8944 -2.2183 -0.8740 34 1 3.3749 -4.4059 1.2749 35 1 2.5408 -4.5814 -0.3297 36 1 4.6233 -4.1747 -1.5583 37 1 5.4106 -4.7904 -0.0417 38 1 5.3286 -1.9839 -0.7160 39 1 5.3411 -2.5739 1.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261350725.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:27 Heat of formation + Delta-G solvation = 21.689345 kcal Electronic energy + Delta-G solvation = -18232.789246 eV Core-core repulsion = 15560.738419 eV Total energy + Delta-G solvation = -2672.050826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.08891 -39.25715 -36.64354 -35.60730 -33.18225 -31.68886 -28.87093 -28.05633 -26.41680 -26.18941 -25.22125 -22.58808 -21.71232 -20.97474 -19.84491 -18.98190 -17.80930 -16.58129 -16.22774 -15.86662 -15.69546 -15.50107 -15.15375 -14.81772 -14.19193 -13.93370 -13.75214 -13.38615 -13.29064 -13.16092 -12.99205 -12.66358 -12.51536 -12.39826 -12.12718 -11.95071 -11.89396 -11.56765 -11.33108 -11.28402 -10.97074 -10.64316 -10.58281 -10.49022 -8.93022 -8.64189 -6.41795 1.18140 1.50440 1.59079 1.78302 2.21897 2.28061 2.55289 3.11238 3.62707 3.77241 3.84401 3.90896 3.96701 4.05035 4.16407 4.26716 4.40696 4.51369 4.57704 4.71479 4.79266 4.80031 4.87286 4.91562 4.94212 4.98677 5.07282 5.09641 5.11675 5.14746 5.24554 5.32789 5.41172 5.51263 5.73851 5.85969 5.99156 6.13005 6.44633 6.67390 7.33649 7.42443 8.68414 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.006693 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.489758 B = 4182.412608 C = 5114.900390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 C -0.141 4.141 4 C -0.024 4.024 5 N -0.559 5.559 6 H 0.420 0.580 7 C 0.223 3.777 8 C 0.093 3.907 9 C -0.592 4.592 10 H 0.039 0.961 11 C -0.030 4.030 12 N -0.933 5.933 13 Si 1.120 2.880 14 H -0.274 1.274 15 H -0.275 1.275 16 H -0.277 1.277 17 N -0.513 5.513 18 C -0.018 4.018 19 C -0.027 4.027 20 C -0.135 4.135 21 C -0.125 4.125 22 C -0.127 4.127 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.020 0.980 31 H 0.011 0.989 32 H 0.257 0.743 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.151 3.821 -19.960 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.199 4.199 4 C -0.139 4.139 5 N -0.162 5.162 6 H 0.258 0.742 7 C -0.041 4.041 8 C 0.054 3.946 9 C -0.631 4.631 10 H 0.058 0.942 11 C -0.228 4.228 12 N -0.570 5.570 13 Si 0.941 3.059 14 H -0.200 1.200 15 H -0.200 1.200 16 H -0.202 1.202 17 N -0.233 5.233 18 C -0.146 4.146 19 C -0.046 4.046 20 C -0.173 4.173 21 C -0.163 4.163 22 C -0.164 4.164 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.065 0.935 26 H 0.126 0.874 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.963 2.281 -18.348 18.514 hybrid contribution -0.240 2.034 -0.631 2.143 sum -1.202 4.315 -18.979 19.500 Atomic orbital electron populations 1.21845 0.93729 1.01802 1.02672 1.19756 0.96012 0.95778 0.91618 1.21830 1.00995 0.94352 1.02681 1.21445 1.05949 1.00677 0.85820 1.43104 1.41389 1.25360 1.06345 0.74159 1.23317 0.96461 0.88907 0.95394 1.17558 0.96054 0.97873 0.83069 1.22059 1.47673 0.99076 0.94287 0.94242 1.27314 0.94602 1.07385 0.93511 1.70897 1.43147 1.05596 1.37357 0.82884 0.76837 0.70497 0.75644 1.19977 1.19977 1.20209 1.70003 1.24601 1.26279 1.02399 1.20885 1.03321 0.97555 0.92878 1.20987 0.96230 0.94158 0.93206 1.22867 0.98780 0.95589 1.00093 1.22827 0.96152 0.96098 1.01186 1.22806 0.94976 0.98095 1.00571 0.93751 0.89301 0.93495 0.87388 0.89407 0.93673 0.93133 0.96165 0.97100 0.93311 0.85759 0.93106 0.90649 0.87340 0.91861 0.89691 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.17 71.98 0.66 -2.11 16 2 C -0.01 -0.26 3.29 -11.54 -0.04 -0.30 16 3 C -0.14 -2.58 9.18 71.98 0.66 -1.92 16 4 C -0.02 -0.77 5.75 40.95 0.24 -0.53 16 5 N -0.56 -20.83 6.15 -174.60 -1.07 -21.90 16 6 H 0.42 13.24 8.96 -92.70 -0.83 12.41 16 7 C 0.22 10.70 7.37 138.13 1.02 11.72 16 8 C 0.09 5.08 4.91 29.10 0.14 5.23 16 9 C -0.59 -35.67 9.06 25.60 0.23 -35.44 16 10 H 0.04 2.47 7.74 -2.91 -0.02 2.44 16 11 C -0.03 -1.81 5.46 84.66 0.46 -1.34 16 12 N -0.93 -57.85 13.65 21.45 0.29 -57.56 16 13 Si 1.12 52.61 29.90 68.60 2.05 54.66 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 N -0.51 -24.73 10.86 -176.28 -1.91 -26.65 16 18 C -0.02 -0.67 6.12 41.39 0.25 -0.41 16 19 C -0.03 -0.78 4.04 -11.01 -0.04 -0.82 16 20 C -0.14 -4.03 7.64 31.18 0.24 -3.79 16 21 C -0.13 -2.92 8.09 31.18 0.25 -2.67 16 22 C -0.13 -3.46 7.63 31.12 0.24 -3.22 16 23 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.11 1.95 6.59 -2.38 -0.02 1.94 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.02 1.08 8.00 -2.39 -0.02 1.06 16 31 H 0.01 0.64 8.01 -2.39 -0.02 0.62 16 32 H 0.26 15.96 7.22 -92.71 -0.67 15.29 16 33 H 0.12 2.71 6.74 -2.38 -0.02 2.69 16 34 H 0.05 1.95 7.81 -2.39 -0.02 1.93 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.72 8.09 -2.39 -0.02 1.70 16 Total: -1.00 -72.77 320.18 3.96 -68.81 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.30 Total: 18.26 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 4.31 Total: -35.62 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -2.70 Total: -106.11 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.05 Total: 54.66 kcal Total: -72.77 3.96 -68.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261350725.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.499 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds