Wall clock time and date at job start Mon Mar 30 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47364 * 2 1 4 4 N 1.36884 * 126.59230 * 265.02134 * 3 2 1 5 5 H 0.97000 * 126.39559 * 359.97438 * 4 3 2 6 6 C 1.35046 * 107.20316 * 179.97438 * 4 3 2 7 7 C 1.50700 * 125.64602 * 179.97438 * 6 4 3 8 8 C 1.50706 * 109.47062 * 124.99909 * 7 6 4 9 9 H 1.07998 * 119.99503 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00434 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99826 * 359.72891 * 10 8 7 12 12 Si 1.86800 * 120.00406 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46758 * 269.72576 * 12 10 8 14 14 H 1.48499 * 109.47026 * 29.72423 * 12 10 8 15 15 H 1.48496 * 109.47474 * 149.72459 * 12 10 8 16 16 N 1.30494 * 108.70199 * 0.23055 * 6 4 3 17 17 C 1.34128 * 109.25420 * 359.63031 * 16 6 4 18 18 C 1.50704 * 125.98810 * 180.11719 * 17 16 6 19 19 C 1.54267 * 110.03271 * 58.20550 * 18 17 16 20 20 C 1.54970 * 104.16040 * 217.13903 * 19 18 17 21 21 C 1.54890 * 102.77638 * 37.88444 * 20 19 18 22 22 C 1.53873 * 110.03126 * 300.98722 * 18 17 16 23 23 H 1.09001 * 109.47590 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47485 * 300.00032 * 1 2 3 25 25 H 1.09010 * 109.47117 * 59.99848 * 1 2 3 26 26 H 1.09000 * 109.46831 * 239.99593 * 2 1 3 27 27 H 1.09003 * 109.46884 * 120.00486 * 2 1 3 28 28 H 1.09004 * 109.47406 * 5.00615 * 7 6 4 29 29 H 1.08993 * 109.47274 * 245.00242 * 7 6 4 30 30 H 0.97000 * 120.00236 * 0.27947 * 11 10 8 31 31 H 1.09003 * 110.01709 * 179.59427 * 18 17 16 32 32 H 1.09008 * 110.48535 * 335.78172 * 19 18 17 33 33 H 1.08995 * 110.49329 * 98.42819 * 19 18 17 34 34 H 1.08998 * 110.71843 * 279.57137 * 20 19 18 35 35 H 1.09003 * 110.76816 * 156.22330 * 20 19 18 36 36 H 1.09004 * 110.48493 * 203.40692 * 21 20 19 37 37 H 1.09003 * 110.59911 * 80.82289 * 21 20 19 38 38 H 1.09003 * 110.03166 * 238.56774 * 22 18 17 39 39 H 1.08996 * 110.03334 * 359.95194 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.3943 2.1582 -1.0949 5 1 2.3759 1.8637 -2.0189 6 6 2.7817 3.3724 -0.6483 7 6 3.2644 4.5117 -1.5086 8 6 2.4326 5.7375 -1.2319 9 1 1.6346 5.6958 -0.5054 10 6 2.6910 6.9125 -1.9054 11 7 3.6669 6.9650 -2.7855 12 14 1.6605 8.4321 -1.5619 13 1 0.4951 8.4582 -2.4820 14 1 1.1811 8.3979 -0.1568 15 1 2.4858 9.6483 -1.7738 16 7 2.6741 3.3939 0.6520 17 6 2.2110 2.2090 1.0771 18 6 1.9435 1.8251 2.5097 19 6 0.9216 2.7968 3.1352 20 6 1.4113 2.9742 4.5947 21 6 2.9523 2.9928 4.4391 22 6 3.2340 1.9492 3.3384 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8901 26 1 1.8932 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.1703 4.2385 -2.5597 29 1 4.3091 4.7222 -1.2801 30 1 4.2022 6.1759 -2.9638 31 1 1.5655 0.8038 2.5579 32 1 0.9329 3.7522 2.6104 33 1 -0.0780 2.3626 3.1175 34 1 1.0956 2.1334 5.2123 35 1 1.0536 3.9161 5.0106 36 1 3.4335 2.7019 5.3728 37 1 3.2942 3.9793 4.1259 38 1 3.4819 0.9884 3.7896 39 1 4.0540 2.2863 2.7044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261351523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:19 Heat of formation + Delta-G solvation = 11.529956 kcal Electronic energy + Delta-G solvation = -18278.953956 eV Core-core repulsion = 15606.462586 eV Total energy + Delta-G solvation = -2672.491371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.51492 -37.60556 -34.20975 -33.25049 -31.92690 -29.79648 -28.37585 -28.35675 -25.93294 -23.44233 -22.59177 -20.51668 -20.44352 -20.11016 -18.49199 -16.89369 -16.34898 -15.57679 -14.86695 -14.56105 -14.07475 -13.84225 -13.67240 -13.22086 -12.98852 -12.82601 -12.29747 -11.99652 -11.68096 -11.37059 -11.20678 -11.12936 -10.92686 -10.82172 -10.77206 -10.64365 -10.50442 -10.35506 -10.18693 -10.05970 -9.09285 -9.01435 -8.77085 -8.38225 -7.34231 -6.37464 -4.07089 2.67286 3.45503 3.51030 3.67184 3.76319 3.87633 4.56753 4.85640 4.98726 5.00304 5.05576 5.09872 5.36366 5.40062 5.44357 5.58540 5.71959 5.73180 5.84614 5.86317 5.89487 5.93273 5.94649 6.06451 6.14240 6.17752 6.23622 6.32419 6.41937 6.54363 6.65659 6.76002 6.86369 7.00052 7.18061 7.49165 7.97483 8.18672 8.49602 8.84287 9.02285 9.60916 11.01521 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.006745 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.045950 B = 4150.425326 C = 4973.401946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C -0.061 4.061 4 N -0.575 5.575 5 H 0.409 0.591 6 C 0.266 3.734 7 C 0.084 3.916 8 C -0.579 4.579 9 H 0.057 0.943 10 C 0.016 3.984 11 N -0.914 5.914 12 Si 1.074 2.926 13 H -0.289 1.289 14 H -0.287 1.287 15 H -0.284 1.284 16 N -0.480 5.480 17 C 0.014 3.986 18 C -0.002 4.002 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.111 4.111 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.021 0.979 29 H 0.037 0.963 30 H 0.267 0.733 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 -13.866 8.904 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.175 4.175 4 N -0.178 5.178 5 H 0.245 0.755 6 C 0.002 3.998 7 C 0.045 3.955 8 C -0.618 4.618 9 H 0.076 0.924 10 C -0.187 4.187 11 N -0.551 5.551 12 Si 0.902 3.098 13 H -0.216 1.216 14 H -0.213 1.213 15 H -0.209 1.209 16 N -0.199 5.199 17 C -0.116 4.116 18 C -0.021 4.021 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.149 4.149 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.487 -11.610 9.053 15.391 hybrid contribution -0.001 -2.495 -0.728 2.599 sum -4.488 -14.105 8.325 16.982 Atomic orbital electron populations 1.21775 0.95075 1.01073 1.02463 1.19815 0.95587 0.90013 1.02267 1.20699 1.12931 0.96240 0.87677 1.43307 1.52452 1.13091 1.08909 0.75458 1.24088 0.98594 0.86076 0.91079 1.17915 0.97334 0.88879 0.91373 1.21844 1.18623 0.95308 1.26016 0.92416 1.25866 0.97798 1.01426 0.93657 1.70791 1.18806 1.32788 1.32709 0.83458 0.75233 0.75191 0.75875 1.21560 1.21253 1.20932 1.70165 1.20046 1.20918 1.08768 1.20305 1.05730 0.91413 0.94178 1.19977 0.95391 0.98144 0.88632 1.22410 0.97133 1.00535 0.95079 1.22481 0.95906 1.00877 0.96768 1.22313 0.95769 1.00048 0.97700 1.22114 0.97879 0.98198 0.96693 0.92674 0.92227 0.92942 0.92031 0.90358 0.96142 0.94519 0.92318 0.90963 0.90291 0.92498 0.92148 0.91909 0.92481 0.91197 0.92687 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 37.15 0.37 -1.29 16 2 C -0.04 -0.47 6.02 -27.89 -0.17 -0.64 16 3 C -0.06 -1.05 6.49 -81.60 -0.53 -1.58 16 4 N -0.57 -10.69 6.15 -6.54 -0.04 -10.73 16 5 H 0.41 6.37 8.96 -40.82 -0.37 6.01 16 6 C 0.27 6.12 7.37 -155.42 -1.15 4.97 16 7 C 0.08 2.16 4.91 -29.03 -0.14 2.01 16 8 C -0.58 -16.72 9.06 -34.44 -0.31 -17.03 16 9 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 10 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 11 N -0.91 -27.64 13.65 55.43 0.76 -26.88 16 12 Si 1.07 25.85 29.90 -169.99 -5.08 20.76 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 N -0.48 -11.11 11.01 -7.07 -0.08 -11.19 16 17 C 0.01 0.26 5.30 -82.85 -0.44 -0.18 16 18 C 0.00 -0.03 3.31 -90.65 -0.30 -0.33 16 19 C -0.11 -1.72 6.36 -25.03 -0.16 -1.88 16 20 C -0.12 -1.57 6.91 -24.69 -0.17 -1.74 16 21 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16 22 C -0.11 -1.62 6.45 -25.61 -0.17 -1.79 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.87 7.42 -51.93 -0.39 0.49 16 28 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 29 H 0.04 1.00 8.00 -51.93 -0.42 0.58 16 30 H 0.27 7.93 7.22 -40.82 -0.29 7.63 16 31 H 0.07 0.95 6.99 -51.93 -0.36 0.59 16 32 H 0.08 1.47 7.69 -51.92 -0.40 1.07 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.17 7.66 -51.93 -0.40 0.78 16 LS Contribution 317.53 15.07 4.79 4.79 Total: -1.00 -32.04 317.53 -9.56 -41.60 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.47 Total: 2.60 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -3.43 Total: -20.94 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.64 Total: -48.80 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.04 -9.56 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261351523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.128 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds