Wall clock time and date at job start Mon Mar 30 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47364 * 2 1 4 4 N 1.36884 * 126.59230 * 265.02134 * 3 2 1 5 5 H 0.97000 * 126.39559 * 359.97438 * 4 3 2 6 6 C 1.35046 * 107.20316 * 179.97438 * 4 3 2 7 7 C 1.50700 * 125.64602 * 179.97438 * 6 4 3 8 8 C 1.50706 * 109.47062 * 124.99909 * 7 6 4 9 9 H 1.07998 * 119.99503 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00434 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99826 * 359.72891 * 10 8 7 12 12 Si 1.86800 * 120.00406 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46758 * 269.72576 * 12 10 8 14 14 H 1.48499 * 109.47026 * 29.72423 * 12 10 8 15 15 H 1.48496 * 109.47474 * 149.72459 * 12 10 8 16 16 N 1.30494 * 108.70199 * 0.23055 * 6 4 3 17 17 C 1.34128 * 109.25420 * 359.63031 * 16 6 4 18 18 C 1.50704 * 125.98810 * 180.11719 * 17 16 6 19 19 C 1.54267 * 110.03271 * 58.20550 * 18 17 16 20 20 C 1.54970 * 104.16040 * 217.13903 * 19 18 17 21 21 C 1.54890 * 102.77638 * 37.88444 * 20 19 18 22 22 C 1.53873 * 110.03126 * 300.98722 * 18 17 16 23 23 H 1.09001 * 109.47590 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47485 * 300.00032 * 1 2 3 25 25 H 1.09010 * 109.47117 * 59.99848 * 1 2 3 26 26 H 1.09000 * 109.46831 * 239.99593 * 2 1 3 27 27 H 1.09003 * 109.46884 * 120.00486 * 2 1 3 28 28 H 1.09004 * 109.47406 * 5.00615 * 7 6 4 29 29 H 1.08993 * 109.47274 * 245.00242 * 7 6 4 30 30 H 0.97000 * 120.00236 * 0.27947 * 11 10 8 31 31 H 1.09003 * 110.01709 * 179.59427 * 18 17 16 32 32 H 1.09008 * 110.48535 * 335.78172 * 19 18 17 33 33 H 1.08995 * 110.49329 * 98.42819 * 19 18 17 34 34 H 1.08998 * 110.71843 * 279.57137 * 20 19 18 35 35 H 1.09003 * 110.76816 * 156.22330 * 20 19 18 36 36 H 1.09004 * 110.48493 * 203.40692 * 21 20 19 37 37 H 1.09003 * 110.59911 * 80.82289 * 21 20 19 38 38 H 1.09003 * 110.03166 * 238.56774 * 22 18 17 39 39 H 1.08996 * 110.03334 * 359.95194 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.3943 2.1582 -1.0949 5 1 2.3759 1.8637 -2.0189 6 6 2.7817 3.3724 -0.6483 7 6 3.2644 4.5117 -1.5086 8 6 2.4326 5.7375 -1.2319 9 1 1.6346 5.6958 -0.5054 10 6 2.6910 6.9125 -1.9054 11 7 3.6669 6.9650 -2.7855 12 14 1.6605 8.4321 -1.5619 13 1 0.4951 8.4582 -2.4820 14 1 1.1811 8.3979 -0.1568 15 1 2.4858 9.6483 -1.7738 16 7 2.6741 3.3939 0.6520 17 6 2.2110 2.2090 1.0771 18 6 1.9435 1.8251 2.5097 19 6 0.9216 2.7968 3.1352 20 6 1.4113 2.9742 4.5947 21 6 2.9523 2.9928 4.4391 22 6 3.2340 1.9492 3.3384 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8901 26 1 1.8932 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.1703 4.2385 -2.5597 29 1 4.3091 4.7222 -1.2801 30 1 4.2022 6.1759 -2.9638 31 1 1.5655 0.8038 2.5579 32 1 0.9329 3.7522 2.6104 33 1 -0.0780 2.3626 3.1175 34 1 1.0956 2.1334 5.2123 35 1 1.0536 3.9161 5.0106 36 1 3.4335 2.7019 5.3728 37 1 3.2942 3.9793 4.1259 38 1 3.4819 0.9884 3.7896 39 1 4.0540 2.2863 2.7044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261351523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:19 Heat of formation + Delta-G solvation = -7.144884 kcal Electronic energy + Delta-G solvation = -18279.763758 eV Core-core repulsion = 15606.462586 eV Total energy + Delta-G solvation = -2673.301172 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.04807 -38.77676 -35.97869 -34.83370 -33.42850 -31.47810 -29.85489 -29.50247 -27.40183 -25.39772 -23.88461 -21.94325 -21.80699 -21.40060 -19.89446 -18.95728 -17.91012 -16.75852 -16.31002 -15.80877 -15.71298 -15.27235 -15.21416 -14.61698 -14.32152 -14.15958 -13.91830 -13.81006 -13.12113 -12.69224 -12.55750 -12.42445 -12.38622 -12.14350 -12.03510 -11.95965 -11.92083 -11.85048 -11.47404 -11.37512 -10.98668 -10.65377 -10.60877 -10.53865 -8.93510 -8.64429 -6.42103 1.17758 1.49207 1.58755 1.78365 2.24620 2.29067 2.54929 3.10935 3.58635 3.82984 3.87522 3.90631 4.09923 4.13374 4.40099 4.45277 4.49303 4.61474 4.67820 4.74287 4.76673 4.79039 4.88123 4.90778 4.93896 5.02346 5.04675 5.11322 5.19704 5.25578 5.34308 5.39632 5.47282 5.55223 5.62354 5.85231 6.01929 6.12641 6.44795 6.68082 7.33340 7.42939 8.68081 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.006745 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.045950 B = 4150.425326 C = 4973.401946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.038 4.038 4 N -0.563 5.563 5 H 0.422 0.578 6 C 0.222 3.778 7 C 0.093 3.907 8 C -0.592 4.592 9 H 0.039 0.961 10 C -0.030 4.030 11 N -0.933 5.933 12 Si 1.119 2.881 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.276 1.276 16 N -0.512 5.512 17 C -0.015 4.015 18 C -0.002 4.002 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.109 4.109 23 H 0.087 0.913 24 H 0.052 0.948 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.021 0.979 29 H 0.011 0.989 30 H 0.257 0.743 31 H 0.106 0.894 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 -16.327 10.303 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.153 4.153 4 N -0.167 5.167 5 H 0.261 0.739 6 C -0.042 4.042 7 C 0.054 3.946 8 C -0.631 4.631 9 H 0.057 0.943 10 C -0.228 4.228 11 N -0.570 5.570 12 Si 0.940 3.060 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.201 1.201 16 N -0.232 5.232 17 C -0.144 4.144 18 C -0.021 4.021 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.147 4.147 23 H 0.105 0.895 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.096 -14.097 10.429 18.564 hybrid contribution 0.509 -1.841 -1.136 2.223 sum -5.586 -15.938 9.292 19.276 Atomic orbital electron populations 1.21749 0.93900 1.02884 1.01491 1.20066 0.96365 0.86626 1.04467 1.21584 1.09595 0.97828 0.86257 1.43208 1.51373 1.11897 1.10182 0.73915 1.23338 1.02438 0.87271 0.91173 1.17561 0.95508 0.89573 0.91944 1.22056 1.18520 0.96996 1.25517 0.94300 1.27306 0.98127 1.04478 0.92885 1.70899 1.19715 1.32479 1.33898 0.82900 0.74590 0.72037 0.76454 1.19323 1.20591 1.20150 1.70034 1.20393 1.23674 1.09135 1.20969 1.06358 0.90408 0.96634 1.20172 0.95766 0.99658 0.86493 1.22376 0.98417 0.98332 0.96190 1.22473 0.94755 1.02308 0.95554 1.22318 0.96910 0.98196 0.98556 1.22110 0.96387 0.99851 0.96365 0.89455 0.92853 0.94357 0.90036 0.87960 0.96106 0.97118 0.93308 0.87637 0.95014 0.90581 0.88870 0.91878 0.89788 0.94486 0.89444 0.94904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.89 71.98 0.71 -1.99 16 2 C -0.04 -0.77 6.02 29.84 0.18 -0.59 16 3 C -0.04 -1.23 6.49 40.95 0.27 -0.96 16 4 N -0.56 -20.98 6.15 -174.61 -1.07 -22.06 16 5 H 0.42 13.02 8.96 -92.71 -0.83 12.19 16 6 C 0.22 10.66 7.37 138.13 1.02 11.68 16 7 C 0.09 5.08 4.91 29.10 0.14 5.22 16 8 C -0.59 -35.77 9.06 25.60 0.23 -35.53 16 9 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 10 C -0.03 -1.80 5.46 84.65 0.46 -1.34 16 11 N -0.93 -57.94 13.65 21.45 0.29 -57.64 16 12 Si 1.12 52.70 29.90 68.60 2.05 54.75 16 13 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 N -0.51 -24.76 11.01 -176.29 -1.94 -26.70 16 17 C -0.01 -0.55 5.30 41.39 0.22 -0.33 16 18 C 0.00 -0.05 3.31 -10.81 -0.04 -0.08 16 19 C -0.12 -3.36 6.36 31.70 0.20 -3.16 16 20 C -0.11 -2.66 6.91 31.91 0.22 -2.44 16 21 C -0.12 -3.20 6.83 31.67 0.22 -2.99 16 22 C -0.11 -3.04 6.45 31.32 0.20 -2.83 16 23 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.74 7.42 -2.39 -0.02 1.72 16 28 H 0.02 1.11 8.01 -2.39 -0.02 1.09 16 29 H 0.01 0.63 8.00 -2.39 -0.02 0.61 16 30 H 0.26 15.98 7.22 -92.71 -0.67 15.31 16 31 H 0.11 2.33 6.99 -2.39 -0.02 2.31 16 32 H 0.03 1.21 7.69 -2.38 -0.02 1.19 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.03 1.13 7.66 -2.39 -0.02 1.11 16 Total: -1.00 -73.63 317.53 3.66 -69.97 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.29 Total: 17.02 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 4.04 Total: -35.35 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -2.72 Total: -106.39 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 2.05 Total: 54.75 kcal Total: -73.63 3.66 -69.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261351523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.829 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds