Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47354 * 2 1 4 4 N 1.46897 * 109.47320 * 239.99235 * 2 1 3 5 5 C 1.53007 * 109.46994 * 119.99611 * 2 1 3 6 6 C 1.52998 * 109.47206 * 65.00033 * 5 2 1 7 7 N 1.46495 * 109.47236 * 180.02562 * 6 5 2 8 8 C 1.38859 * 119.99920 * 180.02562 * 7 6 5 9 9 C 1.39560 * 119.84294 * 359.72193 * 8 7 6 10 10 C 1.36344 * 120.15861 * 179.71950 * 9 8 7 11 11 C 1.40884 * 119.83858 * 0.55594 * 10 9 8 12 12 C 1.41134 * 120.15673 * 179.69853 * 11 10 9 13 13 H 1.08006 * 119.99856 * 155.10648 * 12 11 10 14 14 C 1.39864 * 119.99956 * 335.10464 * 12 11 10 15 15 N 1.30899 * 120.00253 * 342.13139 * 14 12 11 16 16 Si 1.86796 * 119.99768 * 162.13060 * 14 12 11 17 17 H 1.48504 * 109.47219 * 94.65490 * 16 14 12 18 18 H 1.48502 * 109.47229 * 214.65407 * 16 14 12 19 19 H 1.48506 * 109.47275 * 334.65268 * 16 14 12 20 20 C 1.40889 * 119.68782 * 359.71677 * 11 10 9 21 21 C 1.36337 * 119.83450 * 0.02562 * 20 11 10 22 22 H 1.08997 * 109.47208 * 300.00838 * 1 2 3 23 23 H 1.09004 * 109.46561 * 60.00374 * 1 2 3 24 24 H 1.08996 * 109.47198 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47111 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46568 * 299.99703 * 3 2 1 27 27 H 1.08999 * 109.47175 * 59.99204 * 3 2 1 28 28 H 1.00906 * 111.00060 * 180.02562 * 4 2 1 29 29 H 1.00900 * 111.00310 * 303.95688 * 4 2 1 30 30 H 1.09006 * 109.46640 * 304.99800 * 5 2 1 31 31 H 1.09001 * 109.47360 * 185.00034 * 5 2 1 32 32 H 1.08998 * 109.47148 * 59.99765 * 6 5 2 33 33 H 1.09009 * 109.47217 * 300.00110 * 6 5 2 34 34 H 0.97000 * 120.00456 * 359.97438 * 7 6 5 35 35 H 1.08000 * 119.92336 * 359.97438 * 9 8 7 36 36 H 1.07998 * 120.08188 * 180.27319 * 10 9 8 37 37 H 0.96995 * 120.00367 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.08381 * 179.97438 * 20 11 10 39 39 H 1.08005 * 119.92082 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7212 1.2494 6 6 1.6352 -2.1954 1.1882 7 7 2.1230 -2.8858 2.3847 8 6 1.8756 -4.2417 2.5532 9 6 1.1570 -4.9423 1.5834 10 6 0.9153 -6.2751 1.7396 11 6 1.3829 -6.9423 2.8890 12 6 1.1310 -8.3204 3.0605 13 1 1.7848 -8.9157 3.6807 14 6 0.0348 -8.9150 2.4274 15 7 -0.9424 -8.1710 1.9746 16 14 -0.0348 -10.7710 2.2279 17 1 -0.8052 -11.3612 3.3520 18 1 -0.6991 -11.1062 0.9427 19 1 1.3446 -11.3212 2.2304 20 6 2.1027 -6.2273 3.8665 21 6 2.3415 -4.8961 3.6946 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 3.0284 -0.7064 -1.2224 29 1 1.6442 -1.6275 -1.2557 30 1 1.6053 -0.2615 2.1370 31 1 3.1263 -0.6443 1.2953 32 1 2.0698 -2.6550 0.3005 33 1 0.5488 -2.2723 1.1422 34 1 2.6194 -2.3959 3.0588 35 1 0.7949 -4.4285 0.7052 36 1 0.3628 -6.8170 0.9863 37 1 -1.7025 -8.5834 1.5352 38 1 2.4638 -6.7324 4.7503 39 1 2.8929 -4.3466 4.4433 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304650221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 6.169375 kcal Electronic energy + Delta-G solvation = -17610.286854 eV Core-core repulsion = 14937.563031 eV Total energy + Delta-G solvation = -2672.723823 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.64718 -37.60451 -34.87171 -32.96606 -30.00501 -29.64752 -29.45158 -27.70154 -27.38740 -24.36206 -22.99137 -20.95754 -19.91622 -19.22164 -17.20871 -16.23820 -15.91842 -15.22457 -15.08918 -14.79762 -14.52245 -14.01554 -13.76613 -12.89106 -12.61572 -12.48691 -12.20220 -12.10600 -12.00569 -11.90007 -11.64923 -11.57219 -11.31325 -11.01183 -10.87716 -10.81776 -10.62073 -10.42820 -9.70885 -9.29699 -9.21973 -8.80533 -8.51774 -7.50220 -6.64283 -6.39383 -4.03595 2.91326 3.09354 3.15052 3.20040 3.34966 4.05564 4.14978 4.47337 4.70006 4.76515 4.85004 5.07689 5.26418 5.35222 5.57021 5.59988 5.71141 5.79959 5.82407 5.85338 6.01647 6.06538 6.13328 6.26045 6.27786 6.32324 6.92271 6.93078 7.08943 7.19919 7.35494 7.36352 7.54840 7.68418 7.83493 8.14958 8.28597 8.48812 8.69502 8.79356 9.05937 9.14896 10.37474 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.039244 B = 0.004179 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.307442 B = 6698.976667 C = 7150.676944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.116 3.884 3 C -0.137 4.137 4 N -0.841 5.841 5 C -0.159 4.159 6 C 0.137 3.863 7 N -0.762 5.762 8 C 0.089 3.911 9 C -0.163 4.163 10 C -0.125 4.125 11 C 0.075 3.925 12 C -0.468 4.468 13 H 0.072 0.928 14 C 0.075 3.925 15 N -0.808 5.808 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.187 4.187 21 C -0.159 4.159 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.339 0.661 29 H 0.345 0.655 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.383 0.617 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.276 0.724 38 H 0.091 0.909 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 12.928 -3.690 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.023 3.977 3 C -0.194 4.194 4 N -0.372 5.372 5 C -0.199 4.199 6 C 0.011 3.989 7 N -0.398 5.398 8 C -0.008 4.008 9 C -0.185 4.185 10 C -0.145 4.145 11 C 0.072 3.928 12 C -0.499 4.499 13 H 0.091 0.909 14 C -0.140 4.140 15 N -0.435 5.435 16 Si 0.727 3.273 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.207 4.207 21 C -0.181 4.181 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.159 0.841 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.215 0.785 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.500 13.481 -4.396 14.398 hybrid contribution 0.450 -1.363 0.915 1.702 sum 2.950 12.118 -3.481 12.948 Atomic orbital electron populations 1.21890 0.93763 1.02556 1.01915 1.20740 0.95443 0.93920 0.87646 1.21798 1.00728 0.94947 1.01964 1.59010 1.13738 1.24140 1.40328 1.22584 1.01295 0.96144 0.99884 1.21043 0.98334 0.90333 0.89152 1.43842 1.65568 1.07099 1.23280 1.17362 1.03258 0.83144 0.96993 1.20072 1.04452 0.95494 0.98480 1.20928 1.02409 0.92849 0.98269 1.17493 0.91630 0.93282 0.90380 1.19367 1.09590 0.93976 1.26952 0.90948 1.25791 0.94518 1.00081 0.93621 1.69852 1.05928 1.37386 1.30322 0.86413 0.79299 0.83307 0.78289 1.19854 1.20263 1.18664 1.20549 1.07750 0.93144 0.99268 1.19811 1.06055 0.95309 0.96940 0.92237 0.91988 0.92106 0.92922 0.91888 0.92336 0.84866 0.84104 0.91188 0.91788 0.94021 0.93230 0.78509 0.89547 0.86414 0.91327 0.89044 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.49 37.16 0.32 -1.18 16 2 C 0.12 1.17 0.98 -131.60 -0.13 1.04 16 3 C -0.14 -1.21 8.77 37.16 0.33 -0.88 16 4 N -0.84 -8.68 8.67 0.74 0.01 -8.67 16 5 C -0.16 -1.78 4.52 -26.73 -0.12 -1.90 16 6 C 0.14 2.00 4.18 -4.05 -0.02 1.98 16 7 N -0.76 -13.33 5.70 -58.50 -0.33 -13.67 16 8 C 0.09 1.97 6.67 -83.69 -0.56 1.41 16 9 C -0.16 -3.86 9.23 -39.77 -0.37 -4.23 16 10 C -0.12 -3.30 8.63 -39.26 -0.34 -3.64 16 11 C 0.08 2.05 5.57 -106.79 -0.59 1.46 16 12 C -0.47 -12.82 9.03 -37.88 -0.34 -13.16 16 13 H 0.07 1.92 7.91 -52.48 -0.41 1.50 16 14 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 15 N -0.81 -21.58 10.98 55.54 0.61 -20.97 16 16 Si 0.90 19.31 29.59 -169.99 -5.03 14.28 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 20 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 21 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.69 6.56 -51.93 -0.34 0.35 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.34 3.20 9.00 -39.29 -0.35 2.85 16 29 H 0.34 3.75 7.21 -39.29 -0.28 3.46 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.62 6.50 -51.93 -0.34 0.28 16 33 H 0.05 0.78 6.34 -51.92 -0.33 0.45 16 34 H 0.38 6.00 8.47 -40.82 -0.35 5.65 16 35 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 36 H 0.12 3.23 6.18 -52.49 -0.32 2.90 16 37 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 38 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -28.26 313.27 -8.73 -36.99 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -6.02 Total: 13.65 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -2.69 Total: -26.33 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.28 Total: -43.31 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.26 -8.73 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304650221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.161 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds