Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47354 * 2 1 4 4 N 1.46897 * 109.47320 * 239.99235 * 2 1 3 5 5 C 1.53007 * 109.46994 * 119.99611 * 2 1 3 6 6 C 1.52998 * 109.47206 * 65.00033 * 5 2 1 7 7 N 1.46495 * 109.47236 * 180.02562 * 6 5 2 8 8 C 1.38859 * 119.99920 * 180.02562 * 7 6 5 9 9 C 1.39560 * 119.84294 * 359.72193 * 8 7 6 10 10 C 1.36344 * 120.15861 * 179.71950 * 9 8 7 11 11 C 1.40884 * 119.83858 * 0.55594 * 10 9 8 12 12 C 1.41134 * 120.15673 * 179.69853 * 11 10 9 13 13 H 1.08006 * 119.99856 * 155.10648 * 12 11 10 14 14 C 1.39864 * 119.99956 * 335.10464 * 12 11 10 15 15 N 1.30899 * 120.00253 * 342.13139 * 14 12 11 16 16 Si 1.86796 * 119.99768 * 162.13060 * 14 12 11 17 17 H 1.48504 * 109.47219 * 94.65490 * 16 14 12 18 18 H 1.48502 * 109.47229 * 214.65407 * 16 14 12 19 19 H 1.48506 * 109.47275 * 334.65268 * 16 14 12 20 20 C 1.40889 * 119.68782 * 359.71677 * 11 10 9 21 21 C 1.36337 * 119.83450 * 0.02562 * 20 11 10 22 22 H 1.08997 * 109.47208 * 300.00838 * 1 2 3 23 23 H 1.09004 * 109.46561 * 60.00374 * 1 2 3 24 24 H 1.08996 * 109.47198 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47111 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46568 * 299.99703 * 3 2 1 27 27 H 1.08999 * 109.47175 * 59.99204 * 3 2 1 28 28 H 1.00906 * 111.00060 * 180.02562 * 4 2 1 29 29 H 1.00900 * 111.00310 * 303.95688 * 4 2 1 30 30 H 1.09006 * 109.46640 * 304.99800 * 5 2 1 31 31 H 1.09001 * 109.47360 * 185.00034 * 5 2 1 32 32 H 1.08998 * 109.47148 * 59.99765 * 6 5 2 33 33 H 1.09009 * 109.47217 * 300.00110 * 6 5 2 34 34 H 0.97000 * 120.00456 * 359.97438 * 7 6 5 35 35 H 1.08000 * 119.92336 * 359.97438 * 9 8 7 36 36 H 1.07998 * 120.08188 * 180.27319 * 10 9 8 37 37 H 0.96995 * 120.00367 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.08381 * 179.97438 * 20 11 10 39 39 H 1.08005 * 119.92082 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7212 1.2494 6 6 1.6352 -2.1954 1.1882 7 7 2.1230 -2.8858 2.3847 8 6 1.8756 -4.2417 2.5532 9 6 1.1570 -4.9423 1.5834 10 6 0.9153 -6.2751 1.7396 11 6 1.3829 -6.9423 2.8890 12 6 1.1310 -8.3204 3.0605 13 1 1.7848 -8.9157 3.6807 14 6 0.0348 -8.9150 2.4274 15 7 -0.9424 -8.1710 1.9746 16 14 -0.0348 -10.7710 2.2279 17 1 -0.8052 -11.3612 3.3520 18 1 -0.6991 -11.1062 0.9427 19 1 1.3446 -11.3212 2.2304 20 6 2.1027 -6.2273 3.8665 21 6 2.3415 -4.8961 3.6946 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 3.0284 -0.7064 -1.2224 29 1 1.6442 -1.6275 -1.2557 30 1 1.6053 -0.2615 2.1370 31 1 3.1263 -0.6443 1.2953 32 1 2.0698 -2.6550 0.3005 33 1 0.5488 -2.2723 1.1422 34 1 2.6194 -2.3959 3.0588 35 1 0.7949 -4.4285 0.7052 36 1 0.3628 -6.8170 0.9863 37 1 -1.7025 -8.5834 1.5352 38 1 2.4638 -6.7324 4.7503 39 1 2.8929 -4.3466 4.4433 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304650221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = -11.396063 kcal Electronic energy + Delta-G solvation = -17611.048548 eV Core-core repulsion = 14937.563031 eV Total energy + Delta-G solvation = -2673.485517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.99789 -38.99867 -36.49465 -34.73558 -31.45268 -31.36617 -30.54516 -29.20156 -28.20607 -26.11331 -24.35806 -22.75963 -21.67555 -20.10581 -19.16586 -17.83574 -16.98879 -16.75902 -16.29666 -16.04202 -15.65156 -15.61189 -15.02657 -14.53550 -14.27057 -13.98067 -13.72653 -13.45563 -13.23745 -12.91197 -12.82365 -12.73334 -12.70878 -12.55224 -12.36301 -12.20831 -11.89007 -11.60809 -11.53765 -11.19459 -11.04731 -10.30632 -9.61671 -9.42904 -8.56058 -8.18350 -6.02279 1.09233 1.16513 1.39988 1.52418 1.58548 2.27067 2.82170 2.84963 3.61449 3.80470 3.83490 3.98895 4.13159 4.35170 4.38111 4.42990 4.49034 4.60434 4.82784 4.94110 4.95910 5.01659 5.04826 5.08605 5.11283 5.14214 5.26902 5.37952 5.38808 5.44349 5.66937 5.78359 5.94395 6.17445 6.28163 6.37243 6.56422 6.65461 6.85190 7.07224 7.13060 7.29471 8.47444 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.039244 B = 0.004179 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.307442 B = 6698.976667 C = 7150.676944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.118 3.882 3 C -0.133 4.133 4 N -0.845 5.845 5 C -0.146 4.146 6 C 0.135 3.865 7 N -0.752 5.752 8 C 0.108 3.892 9 C -0.174 4.174 10 C -0.144 4.144 11 C 0.036 3.964 12 C -0.507 4.507 13 H 0.068 0.932 14 C 0.032 3.968 15 N -0.842 5.842 16 Si 0.976 3.024 17 H -0.265 1.265 18 H -0.268 1.268 19 H -0.261 1.261 20 C -0.196 4.196 21 C -0.166 4.166 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.345 0.655 29 H 0.340 0.660 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.396 0.604 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.282 0.718 38 H 0.097 0.903 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 14.374 -3.657 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.024 3.976 3 C -0.191 4.191 4 N -0.376 5.376 5 C -0.186 4.186 6 C 0.010 3.990 7 N -0.387 5.387 8 C 0.008 3.992 9 C -0.196 4.196 10 C -0.164 4.164 11 C 0.033 3.967 12 C -0.538 4.538 13 H 0.086 0.914 14 C -0.180 4.180 15 N -0.470 5.470 16 Si 0.798 3.202 17 H -0.190 1.190 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.216 4.216 21 C -0.188 4.188 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.230 0.770 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.221 14.984 -4.360 15.934 hybrid contribution 0.275 -1.609 0.904 1.866 sum 3.496 13.375 -3.456 14.250 Atomic orbital electron populations 1.21901 0.94117 1.01726 1.02441 1.20768 0.95181 0.94660 0.86961 1.21768 1.01123 0.93739 1.02440 1.59025 1.14229 1.23856 1.40458 1.22497 1.01875 0.93508 1.00731 1.21179 0.97651 0.92353 0.87814 1.43905 1.64875 1.05418 1.24501 1.17482 1.00897 0.85042 0.95764 1.20224 1.04908 0.94770 0.99703 1.20858 1.03400 0.94074 0.98081 1.17821 0.93354 0.94008 0.91495 1.19604 1.10743 0.94675 1.28826 0.91371 1.26615 0.93580 1.04958 0.92802 1.69915 1.06528 1.39459 1.31075 0.85289 0.79297 0.76992 0.78640 1.18999 1.19254 1.18495 1.20769 1.07425 0.94334 0.99095 1.20120 1.06044 0.94713 0.97909 0.91429 0.91815 0.93575 0.92286 0.91983 0.91348 0.84220 0.84624 0.90563 0.90846 0.94083 0.94266 0.76969 0.87923 0.88358 0.90734 0.88448 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.49 71.98 0.61 -2.14 16 2 C 0.12 2.10 0.98 3.53 0.00 2.10 16 3 C -0.13 -1.96 8.77 71.98 0.63 -1.33 16 4 N -0.84 -15.86 8.67 -151.56 -1.31 -17.17 16 5 C -0.15 -2.85 4.52 30.60 0.14 -2.71 16 6 C 0.13 3.64 4.18 86.38 0.36 4.01 16 7 N -0.75 -24.37 5.70 -339.00 -1.93 -26.30 16 8 C 0.11 4.60 6.67 38.67 0.26 4.85 16 9 C -0.17 -8.24 9.23 22.15 0.20 -8.04 16 10 C -0.14 -7.87 8.63 22.48 0.19 -7.67 16 11 C 0.04 2.03 5.57 -21.27 -0.12 1.91 16 12 C -0.51 -28.79 9.03 23.37 0.21 -28.58 16 13 H 0.07 3.75 7.91 -2.91 -0.02 3.72 16 14 C 0.03 1.72 5.13 85.23 0.44 2.16 16 15 N -0.84 -46.34 10.98 21.81 0.24 -46.10 16 16 Si 0.98 40.31 29.59 68.60 2.03 42.34 16 17 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 18 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 C -0.20 -9.91 9.74 22.48 0.22 -9.69 16 21 C -0.17 -7.32 9.82 22.15 0.22 -7.10 16 22 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.01 6.56 -2.39 -0.02 0.99 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.34 5.77 9.00 -89.69 -0.81 4.96 16 29 H 0.34 6.95 7.21 -89.69 -0.65 6.31 16 30 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.15 6.50 -2.39 -0.02 1.13 16 33 H 0.04 1.18 6.34 -2.38 -0.02 1.16 16 34 H 0.40 11.03 8.47 -92.71 -0.79 10.24 16 35 H 0.10 4.41 6.68 -2.91 -0.02 4.39 16 36 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 37 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 38 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 39 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -61.69 313.27 1.21 -60.48 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -1.18 Total: 38.99 kcal Atomic # 6 Polarization: -55.60 SS G_CDS: 3.37 Total: -52.23 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -3.01 Total: -89.57 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -61.69 1.21 -60.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304650221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.084 kcal (2) G-P(sol) polarization free energy of solvation -61.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds