Wall clock time and date at job start Mon Mar 30 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47178 * 2 1 4 4 C 1.37918 * 119.57803 * 125.00136 * 3 2 1 5 5 C 1.39449 * 119.06659 * 180.02562 * 4 3 2 6 6 N 1.39172 * 120.86489 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99839 * 354.57179 * 6 5 4 8 8 C 1.50705 * 109.46996 * 90.00399 * 7 6 5 9 9 H 1.08000 * 120.00223 * 359.71929 * 8 7 6 10 10 C 1.37875 * 120.00056 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00391 * 179.72107 * 10 8 7 12 12 Si 1.86801 * 119.99934 * 359.72211 * 10 8 7 13 13 H 1.48500 * 109.47511 * 89.99886 * 12 10 8 14 14 H 1.48498 * 109.47341 * 210.00234 * 12 10 8 15 15 H 1.48506 * 109.47299 * 330.00023 * 12 10 8 16 16 C 1.46502 * 119.99895 * 174.57281 * 6 5 4 17 17 C 1.52998 * 109.47004 * 304.65508 * 16 6 5 18 18 C 1.53002 * 109.47100 * 64.65341 * 16 6 5 19 19 C 1.39496 * 118.26764 * 0.26639 * 5 4 3 20 20 C 1.37876 * 119.06734 * 359.44388 * 19 5 4 21 21 N 1.31981 * 119.57954 * 304.98006 * 3 2 1 22 22 H 1.09010 * 109.47101 * 300.00381 * 1 2 3 23 23 H 1.09001 * 109.47252 * 59.99322 * 1 2 3 24 24 H 1.08998 * 109.47681 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47249 * 239.99868 * 2 1 3 26 26 H 1.09003 * 109.47117 * 119.99911 * 2 1 3 27 27 H 1.08003 * 120.46214 * 359.97302 * 4 3 2 28 28 H 1.08993 * 109.47404 * 330.00064 * 7 6 5 29 29 H 1.08998 * 109.47202 * 209.99660 * 7 6 5 30 30 H 0.97001 * 120.00174 * 180.02562 * 11 10 8 31 31 H 1.09001 * 109.46851 * 184.65727 * 16 6 5 32 32 H 1.09001 * 109.47414 * 65.01127 * 17 16 6 33 33 H 1.09003 * 109.47006 * 185.01326 * 17 16 6 34 34 H 1.08998 * 109.47300 * 305.01066 * 17 16 6 35 35 H 1.08999 * 109.46837 * 55.01902 * 18 16 6 36 36 H 1.08995 * 109.46728 * 175.01986 * 18 16 6 37 37 H 1.08999 * 109.47190 * 295.02114 * 18 16 6 38 38 H 1.08004 * 120.46259 * 179.72888 * 19 5 4 39 39 H 1.07998 * 119.57256 * 180.29118 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9080 1.8333 0.9825 5 6 3.3656 3.1506 0.9726 6 7 4.2501 3.6064 1.9456 7 6 4.6198 2.7364 3.0648 8 6 5.8384 1.9310 2.6937 9 1 6.2893 2.0515 1.7198 10 6 6.3744 1.0364 3.5956 11 7 7.4345 0.3296 3.2699 12 14 5.5948 0.8284 5.2804 13 1 4.5599 -0.2349 5.2192 14 1 6.6387 0.4470 6.2653 15 1 4.9658 2.1078 5.6963 16 6 4.8115 4.9563 1.8507 17 6 5.4981 5.1287 0.4943 18 6 3.6886 5.9864 1.9885 19 6 2.9098 4.0008 -0.0350 20 6 2.0391 3.5084 -0.9839 21 7 1.6292 2.2544 -0.9405 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.2338 1.1460 1.7492 28 1 3.7933 2.0623 3.2894 29 1 4.8402 3.3457 3.9413 30 1 7.8113 -0.3000 3.9043 31 1 5.5399 5.1037 2.6480 32 1 4.7539 5.0696 -0.2999 33 1 5.9919 6.0998 0.4580 34 1 6.2378 4.3398 0.3585 35 1 3.1429 5.8071 2.9149 36 1 4.1157 6.9890 2.0066 37 1 3.0075 5.8968 1.1423 38 1 3.2380 5.0290 -0.0738 39 1 1.6848 4.1582 -1.7704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307788698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:08 Heat of formation + Delta-G solvation = 20.966536 kcal Electronic energy + Delta-G solvation = -18572.589586 eV Core-core repulsion = 15900.507416 eV Total energy + Delta-G solvation = -2672.082170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33260 -38.76024 -35.30737 -34.66137 -33.79996 -31.89879 -30.39573 -28.89943 -28.04496 -25.08594 -24.80249 -23.34479 -22.64829 -20.54446 -19.08533 -17.89160 -17.58879 -16.68246 -16.29752 -15.67101 -15.45650 -15.27148 -14.90199 -14.71242 -14.51103 -14.40071 -14.09894 -13.69859 -13.29208 -13.16005 -13.09298 -12.83663 -12.63109 -12.37461 -12.30305 -12.00176 -11.94803 -11.86631 -11.67083 -11.44648 -11.09926 -10.84344 -10.09627 -9.69472 -8.37330 -8.30332 -6.41022 0.43403 0.81776 1.32629 1.32809 1.43005 2.27858 2.32451 2.98330 3.11029 3.58367 3.85014 3.98432 4.20556 4.22048 4.32982 4.40306 4.43225 4.47213 4.60201 4.69109 4.75384 4.77578 4.82840 4.88903 4.92910 4.98820 5.05553 5.06199 5.18055 5.25663 5.32183 5.38269 5.43357 5.44726 5.49240 5.96453 6.08088 6.52958 6.65662 6.72069 7.24067 7.36391 8.81812 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.015897 B = 0.009047 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.962854 B = 3094.192761 C = 4281.321096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C 0.152 3.848 4 C -0.267 4.267 5 C 0.255 3.745 6 N -0.601 5.601 7 C 0.230 3.770 8 C -0.534 4.534 9 H 0.026 0.974 10 C 0.015 3.985 11 N -0.944 5.944 12 Si 0.943 3.057 13 H -0.265 1.265 14 H -0.281 1.281 15 H -0.243 1.243 16 C 0.138 3.862 17 C -0.169 4.169 18 C -0.164 4.164 19 C -0.277 4.277 20 C 0.128 3.872 21 N -0.548 5.548 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.027 0.973 29 H 0.038 0.962 30 H 0.268 0.732 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.024 0.976 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.166 0.834 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.696 8.620 -3.589 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.112 4.112 3 C 0.017 3.983 4 C -0.292 4.292 5 C 0.141 3.859 6 N -0.307 5.307 7 C 0.107 3.893 8 C -0.572 4.572 9 H 0.044 0.956 10 C -0.184 4.184 11 N -0.584 5.584 12 Si 0.766 3.234 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.167 1.167 16 C 0.035 3.965 17 C -0.226 4.226 18 C -0.222 4.222 19 C -0.301 4.301 20 C -0.028 4.028 21 N -0.262 5.262 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.129 0.871 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.183 0.817 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.992 8.273 -3.974 15.101 hybrid contribution 1.304 -0.428 1.483 2.021 sum -10.688 7.846 -2.491 13.490 Atomic orbital electron populations 1.21559 0.92840 1.02353 1.01884 1.20505 0.97927 0.89903 1.02890 1.21151 0.91398 0.96602 0.89192 1.21608 1.06534 0.96284 1.04788 1.18316 0.86953 0.92374 0.88260 1.46906 1.44983 1.14646 1.24129 1.19411 0.94018 0.89988 0.85866 1.21589 1.12263 1.22464 1.00922 0.95588 1.25829 0.95089 0.94630 1.02833 1.70059 1.24064 1.26467 1.37799 0.85786 0.78668 0.80192 0.78804 1.19047 1.20606 1.16682 1.21143 0.95679 0.80985 0.98676 1.22383 1.00787 1.01996 0.97474 1.22387 0.98368 0.98706 1.02704 1.22279 1.06646 1.02273 0.98931 1.22902 0.91867 0.91612 0.96438 1.67476 1.28366 1.04893 1.25493 0.93639 0.92080 0.90647 0.90004 0.90949 0.87089 0.95479 0.94394 0.92314 0.90528 0.90243 0.89222 0.95652 0.93116 0.89166 0.90578 0.81678 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.77 71.98 0.70 -2.51 16 2 C -0.07 -2.25 6.33 29.85 0.19 -2.07 16 3 C 0.15 5.55 6.17 42.46 0.26 5.81 16 4 C -0.27 -11.00 8.82 22.49 0.20 -10.80 16 5 C 0.25 9.93 6.13 38.57 0.24 10.17 16 6 N -0.60 -24.09 2.50 -677.05 -1.69 -25.79 16 7 C 0.23 10.62 3.85 85.64 0.33 10.95 16 8 C -0.53 -30.12 9.93 25.60 0.25 -29.87 16 9 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 10 C 0.01 0.83 5.47 84.65 0.46 1.29 16 11 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 12 Si 0.94 42.38 27.47 68.60 1.88 44.27 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 16 C 0.14 4.45 3.27 44.99 0.15 4.60 16 17 C -0.17 -5.04 8.92 71.98 0.64 -4.40 16 18 C -0.16 -3.91 9.07 71.98 0.65 -3.26 16 19 C -0.28 -8.67 7.15 22.49 0.16 -8.51 16 20 C 0.13 3.80 11.17 84.58 0.94 4.74 16 21 N -0.55 -18.75 9.88 -184.20 -1.82 -20.57 16 22 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 23 H 0.06 1.55 7.94 -2.39 -0.02 1.53 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.07 2.20 7.87 -2.39 -0.02 2.18 16 27 H 0.11 5.04 6.31 -2.91 -0.02 5.02 16 28 H 0.03 1.26 5.93 -2.39 -0.01 1.24 16 29 H 0.04 1.69 7.01 -2.39 -0.02 1.67 16 30 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.08 2.60 7.83 -2.39 -0.02 2.58 16 32 H 0.08 2.18 4.67 -2.39 -0.01 2.17 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.71 4.87 -2.39 -0.01 1.70 16 38 H 0.17 4.24 3.28 -2.91 -0.01 4.23 16 39 H 0.18 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -67.39 307.75 4.83 -62.56 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.97 Total: 21.35 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 5.18 Total: -23.86 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -3.21 Total: -104.32 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.27 kcal Total: -67.39 4.83 -62.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307788698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.525 kcal (2) G-P(sol) polarization free energy of solvation -67.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds