Wall clock time and date at job start Mon Mar 30 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 C 1.53005 * 109.47090 * 239.99874 * 2 1 3 5 5 C 1.50700 * 109.46797 * 119.99983 * 2 1 3 6 6 C 1.38301 * 119.92636 * 0.02562 * 5 2 1 7 7 C 1.38084 * 120.07852 * 180.02562 * 6 5 2 8 8 C 1.38940 * 119.92194 * 359.97438 * 7 6 5 9 9 N 1.39674 * 120.07695 * 179.97438 * 8 7 6 10 10 C 1.38898 * 119.84789 * 359.97438 * 8 7 6 11 11 C 1.50699 * 120.03192 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47840 * 39.99854 * 11 10 8 13 13 N 1.46906 * 109.46867 * 160.00362 * 11 10 8 14 14 C 1.50706 * 109.46824 * 279.99476 * 11 10 8 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99398 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 C 1.38116 * 119.92585 * 0.25618 * 10 8 7 23 23 H 1.08993 * 109.46944 * 300.00421 * 1 2 3 24 24 H 1.09004 * 109.46800 * 60.00195 * 1 2 3 25 25 H 1.09003 * 109.46820 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47402 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47066 * 299.99642 * 3 2 1 28 28 H 1.09003 * 109.46977 * 59.99683 * 3 2 1 29 29 H 1.09002 * 109.46847 * 300.00022 * 4 2 1 30 30 H 1.08996 * 109.47300 * 59.99984 * 4 2 1 31 31 H 1.08994 * 109.46794 * 180.02562 * 4 2 1 32 32 H 1.08005 * 119.96432 * 359.97438 * 6 5 2 33 33 H 1.07997 * 120.04188 * 180.02562 * 7 6 5 34 34 H 0.96997 * 120.00192 * 180.02562 * 9 8 7 35 35 H 0.97004 * 119.99833 * 0.02562 * 9 8 7 36 36 H 1.00899 * 110.99290 * 296.04000 * 13 11 10 37 37 H 1.00897 * 111.00195 * 59.99123 * 13 11 10 38 38 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 39 39 H 1.07999 * 119.96702 * 179.72506 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.1322 -1.2359 2.1395 7 6 1.5889 -1.8870 3.2683 8 6 2.9546 -2.0144 3.4901 9 7 3.4201 -2.6719 4.6311 10 6 3.8558 -1.4864 2.5745 11 6 5.3379 -1.6217 2.8112 12 1 5.5534 -2.6131 3.2094 13 7 6.0552 -1.4370 1.5425 14 6 5.7865 -0.5753 3.7986 15 1 5.0699 0.1180 4.2136 16 6 7.1117 -0.5032 4.1722 17 7 7.5031 0.4097 5.0343 18 14 8.3513 -1.7018 3.4539 19 1 8.4312 -2.9077 4.3167 20 1 7.9228 -2.0978 2.0883 21 1 9.6852 -1.0528 3.3854 22 6 3.3920 -0.8322 1.4500 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 0.0707 -1.1362 1.9668 33 1 0.8855 -2.2974 3.9776 34 1 4.3738 -2.7598 4.7850 35 1 2.7898 -3.0405 5.2696 36 1 5.8198 -2.1652 0.8849 37 1 5.8717 -0.5246 1.1528 38 1 8.4354 0.4602 5.2974 39 1 4.0922 -0.4175 0.7399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309156877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:23 Heat of formation + Delta-G solvation = -4.249349 kcal Electronic energy + Delta-G solvation = -18637.538702 eV Core-core repulsion = 15964.363090 eV Total energy + Delta-G solvation = -2673.175613 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88299 -38.13443 -36.20190 -34.32092 -33.87637 -30.96097 -28.97729 -28.43625 -28.00925 -27.76800 -24.34629 -23.14968 -21.61011 -19.51836 -18.92187 -18.00653 -17.68327 -16.64609 -16.13981 -15.87114 -15.20910 -15.14807 -15.01681 -14.59133 -14.38122 -14.13447 -13.88006 -13.77849 -13.11131 -13.02620 -12.72674 -12.70407 -12.54272 -12.46960 -12.07235 -11.85135 -11.83196 -11.39797 -11.30165 -11.16689 -10.99876 -10.69686 -9.42667 -8.88244 -8.20844 -8.05472 -6.32062 0.73631 0.91666 1.50647 1.59145 1.96101 2.62683 3.09644 3.17167 3.31152 3.89567 3.98317 4.23218 4.24813 4.27321 4.32408 4.53609 4.66717 4.74529 4.85957 4.89619 4.98367 5.01693 5.09096 5.11803 5.18863 5.23771 5.30978 5.33811 5.46268 5.52243 5.54472 5.68798 5.87255 6.01388 6.18969 6.25884 6.53913 6.81403 6.82430 7.06198 7.18010 7.45648 8.93290 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026036 B = 0.007172 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.177371 B = 3903.229621 C = 4376.998593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.020 4.020 3 C -0.137 4.137 4 C -0.133 4.133 5 C -0.137 4.137 6 C -0.090 4.090 7 C -0.211 4.211 8 C 0.201 3.799 9 N -0.871 5.871 10 C -0.177 4.177 11 C 0.239 3.761 12 H 0.035 0.965 13 N -0.836 5.836 14 C -0.500 4.500 15 H 0.017 0.983 16 C 0.025 3.975 17 N -0.953 5.953 18 Si 0.928 3.072 19 H -0.300 1.300 20 H -0.158 1.158 21 H -0.319 1.319 22 C -0.082 4.082 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.398 0.602 35 H 0.401 0.599 36 H 0.328 0.672 37 H 0.333 0.667 38 H 0.260 0.740 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.014 -5.197 -11.382 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 C -0.194 4.194 4 C -0.190 4.190 5 C -0.139 4.139 6 C -0.108 4.108 7 C -0.234 4.234 8 C 0.095 3.905 9 N -0.410 5.410 10 C -0.183 4.183 11 C 0.129 3.871 12 H 0.052 0.948 13 N -0.366 5.366 14 C -0.538 4.538 15 H 0.035 0.965 16 C -0.173 4.173 17 N -0.593 5.593 18 Si 0.754 3.246 19 H -0.228 1.228 20 H -0.079 1.079 21 H -0.248 1.248 22 C -0.101 4.101 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.227 0.773 35 H 0.229 0.771 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.068 0.932 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.233 -5.212 -10.919 17.931 hybrid contribution 0.263 0.002 0.678 0.727 sum -12.970 -5.209 -10.241 17.327 Atomic orbital electron populations 1.21902 0.93210 1.02169 1.02148 1.19383 0.96287 0.94215 0.92130 1.21882 1.00519 0.95375 1.01656 1.21840 1.00672 1.00131 0.96347 1.19707 0.92460 1.03428 0.98333 1.21040 1.00016 0.96756 0.93016 1.20767 0.92703 1.08439 1.01515 1.17895 0.92883 0.92117 0.87567 1.42499 1.10344 1.64250 1.23941 1.20573 0.97246 1.03911 0.96611 1.17944 0.85217 0.95307 0.88621 0.94753 1.59727 1.62906 1.07204 1.06813 1.20887 0.93277 1.16119 1.23551 0.96491 1.25898 1.00804 0.96848 0.93763 1.70126 1.17095 1.36968 1.35142 0.86336 0.75243 0.77743 0.85313 1.22785 1.07881 1.24777 1.20596 0.95559 0.97593 0.96360 0.92707 0.91257 0.91932 0.93840 0.90870 0.93856 0.92761 0.91135 0.93445 0.84045 0.85116 0.77326 0.77057 0.85885 0.85239 0.93175 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.13 71.98 0.51 -2.06 16 2 C -0.02 -0.47 0.85 -52.93 -0.05 -0.52 16 3 C -0.14 -3.33 8.28 71.98 0.60 -2.73 16 4 C -0.13 -2.77 8.29 71.98 0.60 -2.18 16 5 C -0.14 -4.15 4.76 -19.84 -0.09 -4.24 16 6 C -0.09 -2.61 8.97 22.25 0.20 -2.41 16 7 C -0.21 -6.69 9.90 22.40 0.22 -6.47 16 8 C 0.20 7.51 6.73 38.22 0.26 7.76 16 9 N -0.87 -30.01 9.00 -51.36 -0.46 -30.47 16 10 C -0.18 -7.12 5.03 -19.74 -0.10 -7.22 16 11 C 0.24 10.65 1.72 43.42 0.07 10.72 16 12 H 0.03 1.56 6.52 -2.39 -0.02 1.54 16 13 N -0.84 -32.85 5.31 -174.94 -0.93 -33.78 16 14 C -0.50 -28.02 9.05 25.60 0.23 -27.79 16 15 H 0.02 1.10 7.98 -2.91 -0.02 1.07 16 16 C 0.02 1.45 5.47 84.66 0.46 1.91 16 17 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 18 Si 0.93 44.64 26.94 68.60 1.85 46.49 16 19 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.16 -6.74 5.17 99.48 0.51 -6.23 16 21 H -0.32 -16.04 7.11 99.48 0.71 -15.34 16 22 C -0.08 -2.91 7.91 22.25 0.18 -2.73 16 23 H 0.05 1.05 7.51 -2.39 -0.02 1.03 16 24 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.06 1.09 7.51 -2.39 -0.02 1.08 16 26 H 0.04 1.17 7.37 -2.39 -0.02 1.15 16 27 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.07 7.39 -2.39 -0.02 1.05 16 32 H 0.14 3.26 5.88 -2.91 -0.02 3.24 16 33 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.40 15.16 6.87 -92.71 -0.64 14.52 16 35 H 0.40 11.00 8.84 -92.71 -0.82 10.18 16 36 H 0.33 10.94 9.06 -89.69 -0.81 10.13 16 37 H 0.33 12.99 7.28 -89.70 -0.65 12.34 16 38 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 39 H 0.11 3.87 5.28 -2.91 -0.02 3.86 16 Total: -1.00 -67.84 303.24 1.82 -66.02 By element: Atomic # 1 Polarization: 52.20 SS G_CDS: -2.03 Total: 50.17 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 3.09 Total: -37.96 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -1.09 Total: -124.72 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.85 Total: 46.49 kcal Total: -67.84 1.82 -66.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309156877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.769 kcal (2) G-P(sol) polarization free energy of solvation -67.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds