Wall clock time and date at job start Mon Mar 30 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38674 * 120.78943 * 2 1 4 4 C 1.38180 * 119.16025 * 180.02562 * 3 2 1 5 5 N 1.31880 * 120.77078 * 0.02562 * 4 3 2 6 6 C 1.31864 * 121.72129 * 359.97438 * 5 4 3 7 7 C 1.38223 * 120.76385 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.41846 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47384 * 265.00272 * 8 7 6 10 10 C 1.52999 * 109.47339 * 180.02562 * 9 8 7 11 11 N 1.46892 * 109.47204 * 179.97438 * 10 9 8 12 12 C 1.46908 * 111.00158 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46979 * 35.00054 * 12 11 10 14 14 C 1.53003 * 109.46857 * 274.99917 * 12 11 10 15 15 C 1.50693 * 109.47099 * 154.99975 * 12 11 10 16 16 H 1.08002 * 120.00598 * 35.00342 * 15 12 11 17 17 C 1.37879 * 120.00037 * 214.99810 * 15 12 11 18 18 N 1.31512 * 120.00387 * 184.91363 * 17 15 12 19 19 Si 1.86809 * 119.99764 * 4.91897 * 17 15 12 20 20 H 1.48501 * 109.46983 * 84.82734 * 19 17 15 21 21 H 1.48496 * 109.46805 * 204.82941 * 19 17 15 22 22 H 1.48500 * 109.46902 * 324.82837 * 19 17 15 23 23 H 1.09004 * 109.47124 * 89.99535 * 1 2 3 24 24 H 1.08994 * 109.46843 * 210.00169 * 1 2 3 25 25 H 1.09000 * 109.46750 * 329.99692 * 1 2 3 26 26 H 1.08005 * 120.41989 * 0.28012 * 3 2 1 27 27 H 1.08001 * 119.61188 * 180.02562 * 4 3 2 28 28 H 1.08001 * 119.61442 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47441 * 25.00313 * 8 7 6 30 30 H 1.09003 * 109.47097 * 145.00324 * 8 7 6 31 31 H 1.09000 * 109.47151 * 299.99667 * 9 8 7 32 32 H 1.08994 * 109.47243 * 59.99917 * 9 8 7 33 33 H 1.09001 * 109.47421 * 300.00002 * 10 9 8 34 34 H 1.09003 * 109.47160 * 60.00041 * 10 9 8 35 35 H 1.00900 * 111.00412 * 303.95171 * 11 10 9 36 36 H 1.08996 * 109.46990 * 175.04869 * 14 12 11 37 37 H 1.08996 * 109.47237 * 295.05104 * 14 12 11 38 38 H 1.08998 * 109.46979 * 55.05389 * 14 12 11 39 39 H 0.96998 * 120.00291 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1520 -0.0005 5 7 4.2404 0.0001 -0.0016 6 6 3.5983 -1.1516 -0.0016 7 6 2.2167 -1.1909 0.0000 8 6 1.4909 -2.5115 -0.0007 9 6 1.1334 -2.8964 -1.4377 10 6 0.3959 -4.2370 -1.4383 11 7 0.0522 -4.6062 -2.8179 12 6 -0.6592 -5.8909 -2.8574 13 1 -1.2949 -5.9814 -1.9767 14 6 0.3559 -7.0356 -2.8736 15 6 -1.5097 -5.9561 -4.0997 16 1 -1.1643 -5.4990 -5.0153 17 6 -2.7288 -6.5992 -4.0676 18 7 -3.4271 -6.7407 -5.1730 19 14 -3.3889 -7.2697 -2.4537 20 1 -4.0960 -6.1888 -1.7209 21 1 -4.3340 -8.3815 -2.7292 22 1 -2.2612 -7.7717 -1.6281 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6968 2.1378 0.0046 27 1 4.1583 2.0754 -0.0001 28 1 4.1586 -2.0750 -0.0020 29 1 2.1325 -3.2791 0.4321 30 1 0.5788 -2.4252 0.5899 31 1 0.4916 -2.1290 -1.8704 32 1 2.0454 -2.9828 -2.0283 33 1 1.0373 -5.0047 -1.0054 34 1 -0.5162 -4.1502 -0.8478 35 1 -0.4889 -3.8798 -3.2625 36 1 -0.1701 -7.9884 -2.8142 37 1 0.9332 -6.9962 -3.7973 38 1 1.0276 -6.9376 -2.0208 39 1 -4.2850 -7.1928 -5.1503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309324884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:49 Heat of formation + Delta-G solvation = -8.795565 kcal Electronic energy + Delta-G solvation = -17426.750183 eV Core-core repulsion = 14753.377432 eV Total energy + Delta-G solvation = -2673.372751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25943 -38.19710 -36.21021 -34.67187 -33.85524 -32.15593 -29.92631 -28.69710 -27.34632 -26.06412 -23.58938 -22.78477 -21.85403 -21.39866 -19.07102 -17.73043 -17.29003 -17.06157 -16.22178 -16.05332 -15.57669 -15.27315 -14.93752 -14.58550 -14.37651 -14.18784 -13.84457 -13.69436 -13.52423 -13.25365 -13.07600 -12.86684 -12.65893 -12.54544 -12.37303 -12.11357 -11.87153 -11.76157 -11.51937 -11.02576 -10.76008 -10.34197 -10.30798 -9.82355 -9.05578 -8.31857 -6.37752 0.21384 0.34339 1.31627 1.34286 1.45125 2.31559 2.85614 3.01961 3.50289 3.64429 3.81526 3.86041 3.97804 4.03472 4.26676 4.41229 4.47133 4.52853 4.62215 4.63815 4.72444 4.78154 4.83760 4.89228 4.90674 4.97813 5.05021 5.05833 5.12238 5.21959 5.28171 5.43308 5.51847 5.54810 5.70716 5.86022 6.05962 6.55486 6.69866 6.87450 7.07188 7.32010 8.84984 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.036861 B = 0.003999 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.430447 B = 7000.806946 C = 7249.371599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.050 4.050 3 C -0.174 4.174 4 C 0.080 3.920 5 N -0.518 5.518 6 C 0.088 3.912 7 C -0.137 4.137 8 C -0.069 4.069 9 C -0.096 4.096 10 C 0.057 3.943 11 N -0.692 5.692 12 C 0.182 3.818 13 H 0.005 0.995 14 C -0.122 4.122 15 C -0.523 4.523 16 H 0.035 0.965 17 C 0.015 3.985 18 N -0.945 5.945 19 Si 0.943 3.057 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.247 1.247 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.158 0.842 27 H 0.176 0.824 28 H 0.163 0.837 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.335 0.665 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.228 14.053 15.509 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.058 4.058 3 C -0.194 4.194 4 C -0.076 4.076 5 N -0.227 5.227 6 C -0.068 4.068 7 C -0.139 4.139 8 C -0.108 4.108 9 C -0.134 4.134 10 C -0.072 4.072 11 N -0.323 5.323 12 C 0.073 3.927 13 H 0.023 0.977 14 C -0.180 4.180 15 C -0.562 4.562 16 H 0.053 0.947 17 C -0.183 4.183 18 N -0.585 5.585 19 Si 0.767 3.233 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.171 1.171 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.176 0.824 27 H 0.193 0.807 28 H 0.180 0.820 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.152 0.848 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.606 13.697 15.305 23.116 hybrid contribution -2.258 -0.199 0.258 2.282 sum 8.348 13.498 15.562 22.227 Atomic orbital electron populations 1.20936 0.89152 1.04236 1.03350 1.20553 0.97790 0.92649 0.94776 1.22332 0.95494 0.99465 1.02069 1.23161 0.92578 0.96535 0.95363 1.67678 1.42226 0.99338 1.13453 1.22922 0.91682 0.96561 0.95677 1.20892 0.95012 0.96310 1.01645 1.20488 1.00592 0.92859 0.96836 1.21383 1.00276 0.95525 0.96230 1.22058 0.98200 0.97327 0.89607 1.60610 1.49642 1.05132 1.16893 1.19451 0.91069 0.88367 0.93831 0.97701 1.21756 0.98561 0.97569 1.00112 1.21319 1.02599 1.35500 0.96778 0.94708 1.25917 0.96899 0.95692 0.99812 1.70052 1.14617 1.44454 1.29404 0.85807 0.78795 0.78600 0.80133 1.19178 1.21192 1.17073 0.90426 0.90486 0.89533 0.82416 0.80745 0.82018 0.89635 0.89711 0.92392 0.92063 0.91186 0.96022 0.84795 0.94512 0.94124 0.93088 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.57 71.24 0.68 -1.14 16 2 C -0.05 -0.93 5.92 -19.67 -0.12 -1.05 16 3 C -0.17 -2.92 9.82 22.36 0.22 -2.70 16 4 C 0.08 1.50 11.18 84.67 0.95 2.45 16 5 N -0.52 -12.28 10.36 -195.84 -2.03 -14.31 16 6 C 0.09 1.95 10.84 84.68 0.92 2.87 16 7 C -0.14 -2.81 5.15 -19.78 -0.10 -2.92 16 8 C -0.07 -1.35 4.90 29.85 0.15 -1.20 16 9 C -0.10 -2.36 5.46 30.59 0.17 -2.20 16 10 C 0.06 1.74 5.48 86.30 0.47 2.21 16 11 N -0.69 -27.46 6.30 -495.45 -3.12 -30.58 16 12 C 0.18 8.36 2.26 44.17 0.10 8.46 16 13 H 0.01 0.24 4.95 -2.39 -0.01 0.23 16 14 C -0.12 -5.15 9.42 71.98 0.68 -4.47 16 15 C -0.52 -29.56 8.84 25.60 0.23 -29.34 16 16 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 17 C 0.01 0.85 5.47 84.66 0.46 1.31 16 18 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 19 Si 0.94 43.26 26.99 68.60 1.85 45.11 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.25 -10.54 6.82 99.48 0.68 -9.86 16 23 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.08 1.15 6.17 -2.39 -0.01 1.14 16 25 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 26 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 27 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 29 H 0.09 1.49 8.06 -2.39 -0.02 1.47 16 30 H 0.08 1.49 6.29 -2.39 -0.02 1.48 16 31 H 0.06 1.45 8.04 -2.39 -0.02 1.43 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 2.04 7.36 -2.39 -0.02 2.02 16 34 H 0.02 0.65 8.05 -2.39 -0.02 0.63 16 35 H 0.33 13.72 8.35 -89.69 -0.75 12.97 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.83 7.36 -2.39 -0.02 1.81 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -66.70 318.81 2.05 -64.65 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.25 Total: 20.90 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.80 Total: -27.70 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -4.85 Total: -102.97 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.85 Total: 45.11 kcal Total: -66.70 2.05 -64.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309324884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.857 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds