Wall clock time and date at job start Mon Mar 30 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38671 * 120.78857 * 2 1 4 4 C 1.38187 * 119.16193 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76243 * 0.02565 * 4 3 2 6 6 C 1.31852 * 121.72865 * 359.68479 * 5 4 3 7 7 C 1.38231 * 120.75958 * 0.57808 * 6 5 4 8 8 C 1.50699 * 120.41465 * 179.73218 * 7 6 5 9 9 C 1.53007 * 109.47124 * 264.72273 * 8 7 6 10 10 C 1.52994 * 109.47012 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.46817 * 180.02562 * 10 9 8 12 12 C 1.46903 * 110.99973 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46808 * 325.00209 * 12 11 10 14 14 C 1.53000 * 109.47120 * 84.99803 * 12 11 10 15 15 C 1.50694 * 109.47066 * 204.99831 * 12 11 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 H 1.08997 * 109.47007 * 269.97128 * 1 2 3 24 24 H 1.08998 * 109.47114 * 29.97204 * 1 2 3 25 25 H 1.08992 * 109.47530 * 149.97075 * 1 2 3 26 26 H 1.07999 * 120.41956 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.61539 * 180.02562 * 4 3 2 28 28 H 1.08001 * 119.61758 * 180.28980 * 6 5 4 29 29 H 1.09001 * 109.46969 * 144.72336 * 8 7 6 30 30 H 1.08998 * 109.47724 * 24.71988 * 8 7 6 31 31 H 1.09001 * 109.47146 * 60.00171 * 9 8 7 32 32 H 1.09007 * 109.46637 * 300.00233 * 9 8 7 33 33 H 1.08993 * 109.47410 * 60.00199 * 10 9 8 34 34 H 1.08998 * 109.47442 * 299.99473 * 10 9 8 35 35 H 1.00904 * 110.99866 * 303.94610 * 11 10 9 36 36 H 1.09000 * 109.47156 * 59.99749 * 14 12 11 37 37 H 1.08997 * 109.47359 * 180.02562 * 14 12 11 38 38 H 1.09007 * 109.47356 * 300.00024 * 14 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0016 6 6 3.5983 -1.1516 0.0041 7 6 2.2166 -1.1908 -0.0007 8 6 1.4908 -2.5116 -0.0003 9 6 1.1340 -2.8979 -1.4371 10 6 0.3966 -4.2384 -1.4366 11 7 0.0545 -4.6096 -2.8162 12 6 -0.6557 -5.8949 -2.8549 13 1 -0.2630 -6.5505 -2.0776 14 6 -2.1488 -5.6599 -2.6175 15 6 -0.4565 -6.5385 -4.2029 16 1 0.1378 -6.0422 -4.9558 17 6 -1.0340 -7.7605 -4.4755 18 7 -1.7581 -8.3647 -3.5588 19 14 -0.7877 -8.5579 -6.1467 20 1 -1.5056 -9.8573 -6.1857 21 1 -1.3227 -7.6643 -7.2051 22 1 0.6613 -8.7864 -6.3774 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8896 -0.5142 26 1 1.6967 2.1377 0.0004 27 1 4.1583 2.0754 -0.0001 28 1 4.1586 -2.0749 0.0078 29 1 0.5785 -2.4246 0.5899 30 1 2.1324 -3.2786 0.4334 31 1 2.0463 -2.9848 -2.0272 32 1 0.4924 -2.1308 -1.8708 33 1 -0.5157 -4.1511 -0.8467 34 1 1.0378 -5.0057 -1.0028 35 1 -0.4862 -3.8838 -3.2624 36 1 -2.5415 -5.0043 -3.3947 37 1 -2.6757 -6.6137 -2.6457 38 1 -2.2928 -5.1944 -1.6424 39 1 -2.1647 -9.2243 -3.7507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309324885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:52 Heat of formation + Delta-G solvation = 11.537217 kcal Electronic energy + Delta-G solvation = -17352.772949 eV Core-core repulsion = 14680.281893 eV Total energy + Delta-G solvation = -2672.491056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45341 -36.65339 -35.02377 -33.41080 -32.31136 -30.47185 -28.34137 -27.60561 -25.20095 -24.75474 -22.71526 -21.66463 -20.82101 -20.09965 -16.87414 -16.52611 -16.27724 -15.34472 -14.93661 -14.78289 -14.41722 -14.05463 -13.43805 -13.28731 -13.01482 -12.96716 -12.78185 -12.43190 -12.10716 -11.90119 -11.54654 -11.35793 -11.09448 -10.90318 -10.72945 -10.62515 -10.27106 -10.11242 -9.85285 -9.52785 -9.49838 -9.05082 -8.91209 -8.34583 -7.21081 -5.97075 -4.00322 1.01925 1.14471 3.35670 3.39283 3.43004 3.67696 4.34299 4.45266 4.56416 4.60618 4.79122 4.84317 5.17356 5.18736 5.30357 5.34376 5.35669 5.40994 5.55098 5.66895 5.75966 5.82757 5.90094 5.92476 6.06419 6.16026 6.26644 6.51741 6.57011 6.64754 6.69784 6.84478 7.10903 7.38932 7.74645 7.88697 7.90144 8.29461 8.56017 8.64407 9.06836 9.65031 11.09983 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041323 B = 0.003614 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.424584 B = 7744.856600 C = 8041.140397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.041 4.041 3 C -0.175 4.175 4 C 0.089 3.911 5 N -0.489 5.489 6 C 0.103 3.897 7 C -0.125 4.125 8 C -0.078 4.078 9 C -0.110 4.110 10 C 0.061 3.939 11 N -0.686 5.686 12 C 0.211 3.789 13 H 0.033 0.967 14 C -0.168 4.168 15 C -0.496 4.496 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.289 1.289 21 H -0.278 1.278 22 H -0.277 1.277 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.064 0.936 35 H 0.323 0.677 36 H 0.027 0.973 37 H 0.089 0.911 38 H 0.004 0.996 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 16.747 8.986 19.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.049 4.049 3 C -0.194 4.194 4 C -0.068 4.068 5 N -0.198 5.198 6 C -0.054 4.054 7 C -0.127 4.127 8 C -0.116 4.116 9 C -0.148 4.148 10 C -0.070 4.070 11 N -0.315 5.315 12 C 0.103 3.897 13 H 0.051 0.949 14 C -0.228 4.228 15 C -0.535 4.535 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.726 3.274 20 H -0.215 1.215 21 H -0.204 1.204 22 H -0.203 1.203 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.149 0.851 27 H 0.169 0.831 28 H 0.173 0.827 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.046 0.954 37 H 0.107 0.893 38 H 0.023 0.977 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.121 16.282 8.875 19.528 hybrid contribution -1.761 -0.160 -0.507 1.839 sum 4.361 16.122 8.368 18.680 Atomic orbital electron populations 1.20913 0.90332 1.03805 1.02850 1.20237 0.96799 0.92499 0.95346 1.22014 0.95649 0.98522 1.03258 1.22678 0.91763 0.96228 0.96124 1.67667 1.41300 0.98529 1.12298 1.22726 0.91203 0.96221 0.95237 1.20889 0.95130 0.95965 1.00731 1.20572 0.99964 0.92546 0.98566 1.21580 1.01311 0.97361 0.94516 1.21892 0.97493 0.95377 0.92188 1.60796 1.50577 1.06220 1.13911 1.19165 0.87852 0.85194 0.97478 0.94932 1.22428 1.02224 1.02523 0.95596 1.21146 1.30261 1.03282 0.98773 0.92017 1.24960 0.95343 0.97151 0.97127 1.69876 1.34138 1.16301 1.33554 0.86562 0.78274 0.78321 0.84226 1.21469 1.20379 1.20268 0.90608 0.91146 0.90181 0.85090 0.83099 0.82744 0.90790 0.90485 0.91113 0.92413 0.96515 0.91762 0.86037 0.95404 0.89287 0.97689 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.31 36.01 0.34 -0.72 16 2 C -0.04 -0.43 5.92 -104.32 -0.62 -1.05 16 3 C -0.17 -1.68 9.82 -39.44 -0.39 -2.06 16 4 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 5 N -0.49 -6.19 10.36 -13.25 -0.14 -6.33 16 6 C 0.10 1.23 10.84 -17.55 -0.19 1.04 16 7 C -0.13 -1.43 5.15 -104.48 -0.54 -1.97 16 8 C -0.08 -0.88 4.68 -27.88 -0.13 -1.01 16 9 C -0.11 -1.50 5.29 -26.73 -0.14 -1.64 16 10 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 11 N -0.69 -14.49 6.23 -107.95 -0.67 -15.16 16 12 C 0.21 5.32 2.57 -68.87 -0.18 5.14 16 13 H 0.03 0.90 7.80 -51.93 -0.40 0.50 16 14 C -0.17 -4.05 8.94 37.16 0.33 -3.72 16 15 C -0.50 -13.86 8.84 -34.44 -0.30 -14.16 16 16 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 18 N -0.90 -25.86 11.32 55.43 0.63 -25.24 16 19 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 25 H 0.08 0.76 5.64 -51.93 -0.29 0.46 16 26 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 27 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 29 H 0.07 0.78 7.10 -51.93 -0.37 0.41 16 30 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.77 6.97 -51.92 -0.36 0.41 16 33 H 0.02 0.29 7.44 -51.93 -0.39 -0.10 16 34 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 35 H 0.32 6.48 8.47 -39.29 -0.33 6.15 16 36 H 0.03 0.64 8.13 -51.93 -0.42 0.21 16 37 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 38 H 0.00 0.09 7.46 -51.93 -0.39 -0.30 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 317.97 15.07 4.79 4.79 Total: -1.00 -30.14 317.97 -8.73 -38.87 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.19 Total: 3.42 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.13 Total: -16.97 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.18 Total: -46.72 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.14 -8.73 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309324885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.412 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds