Wall clock time and date at job start Mon Mar 30 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38671 * 120.78857 * 2 1 4 4 C 1.38187 * 119.16193 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76243 * 0.02565 * 4 3 2 6 6 C 1.31852 * 121.72865 * 359.68479 * 5 4 3 7 7 C 1.38231 * 120.75958 * 0.57808 * 6 5 4 8 8 C 1.50699 * 120.41465 * 179.73218 * 7 6 5 9 9 C 1.53007 * 109.47124 * 264.72273 * 8 7 6 10 10 C 1.52994 * 109.47012 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.46817 * 180.02562 * 10 9 8 12 12 C 1.46903 * 110.99973 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46808 * 325.00209 * 12 11 10 14 14 C 1.53000 * 109.47120 * 84.99803 * 12 11 10 15 15 C 1.50694 * 109.47066 * 204.99831 * 12 11 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 H 1.08997 * 109.47007 * 269.97128 * 1 2 3 24 24 H 1.08998 * 109.47114 * 29.97204 * 1 2 3 25 25 H 1.08992 * 109.47530 * 149.97075 * 1 2 3 26 26 H 1.07999 * 120.41956 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.61539 * 180.02562 * 4 3 2 28 28 H 1.08001 * 119.61758 * 180.28980 * 6 5 4 29 29 H 1.09001 * 109.46969 * 144.72336 * 8 7 6 30 30 H 1.08998 * 109.47724 * 24.71988 * 8 7 6 31 31 H 1.09001 * 109.47146 * 60.00171 * 9 8 7 32 32 H 1.09007 * 109.46637 * 300.00233 * 9 8 7 33 33 H 1.08993 * 109.47410 * 60.00199 * 10 9 8 34 34 H 1.08998 * 109.47442 * 299.99473 * 10 9 8 35 35 H 1.00904 * 110.99866 * 303.94610 * 11 10 9 36 36 H 1.09000 * 109.47156 * 59.99749 * 14 12 11 37 37 H 1.08997 * 109.47359 * 180.02562 * 14 12 11 38 38 H 1.09007 * 109.47356 * 300.00024 * 14 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0016 6 6 3.5983 -1.1516 0.0041 7 6 2.2166 -1.1908 -0.0007 8 6 1.4908 -2.5116 -0.0003 9 6 1.1340 -2.8979 -1.4371 10 6 0.3966 -4.2384 -1.4366 11 7 0.0545 -4.6096 -2.8162 12 6 -0.6557 -5.8949 -2.8549 13 1 -0.2630 -6.5505 -2.0776 14 6 -2.1488 -5.6599 -2.6175 15 6 -0.4565 -6.5385 -4.2029 16 1 0.1378 -6.0422 -4.9558 17 6 -1.0340 -7.7605 -4.4755 18 7 -1.7581 -8.3647 -3.5588 19 14 -0.7877 -8.5579 -6.1467 20 1 -1.5056 -9.8573 -6.1857 21 1 -1.3227 -7.6643 -7.2051 22 1 0.6613 -8.7864 -6.3774 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8896 -0.5142 26 1 1.6967 2.1377 0.0004 27 1 4.1583 2.0754 -0.0001 28 1 4.1586 -2.0749 0.0078 29 1 0.5785 -2.4246 0.5899 30 1 2.1324 -3.2786 0.4334 31 1 2.0463 -2.9848 -2.0272 32 1 0.4924 -2.1308 -1.8708 33 1 -0.5157 -4.1511 -0.8467 34 1 1.0378 -5.0057 -1.0028 35 1 -0.4862 -3.8838 -3.2624 36 1 -2.5415 -5.0043 -3.3947 37 1 -2.6757 -6.6137 -2.6457 38 1 -2.2928 -5.1944 -1.6424 39 1 -2.1647 -9.2243 -3.7507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309324885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:51 Heat of formation + Delta-G solvation = -6.659154 kcal Electronic energy + Delta-G solvation = -17353.562002 eV Core-core repulsion = 14680.281893 eV Total energy + Delta-G solvation = -2673.280110 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26160 -38.20775 -36.25299 -34.70277 -33.74501 -31.81053 -29.56472 -28.64645 -27.23946 -26.02849 -23.59138 -22.76351 -22.17441 -21.69816 -18.34483 -17.72162 -17.28752 -16.75448 -16.47020 -16.05934 -15.44876 -15.32755 -14.99590 -14.41303 -14.26789 -13.74168 -13.71669 -13.58477 -13.51584 -13.24171 -13.07001 -12.80901 -12.65867 -12.47970 -12.35449 -12.15679 -12.06572 -11.74434 -11.49723 -11.03093 -10.47876 -10.33912 -10.29945 -9.82210 -8.93612 -8.09308 -6.20691 0.21399 0.34593 1.43713 1.45500 1.53266 2.44615 2.85692 3.18765 3.52253 3.67815 3.83775 3.86059 3.99266 4.03957 4.27848 4.41659 4.50401 4.59116 4.64600 4.73306 4.76137 4.78503 4.81407 4.88601 4.91857 5.00794 5.06651 5.12921 5.20424 5.30981 5.39333 5.46529 5.53068 5.70105 5.83151 5.86859 6.28637 6.67040 6.85982 6.95917 7.07483 7.49549 8.95965 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041323 B = 0.003614 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.424584 B = 7744.856600 C = 8041.140397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.048 4.048 3 C -0.173 4.173 4 C 0.080 3.920 5 N -0.518 5.518 6 C 0.086 3.914 7 C -0.137 4.137 8 C -0.068 4.068 9 C -0.094 4.094 10 C 0.063 3.937 11 N -0.692 5.692 12 C 0.214 3.786 13 H 0.001 0.999 14 C -0.155 4.155 15 C -0.519 4.519 16 H 0.053 0.947 17 C 0.008 3.992 18 N -0.923 5.923 19 Si 0.961 3.039 20 H -0.284 1.284 21 H -0.271 1.271 22 H -0.274 1.274 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.176 0.824 28 H 0.159 0.841 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.052 0.948 35 H 0.331 0.669 36 H 0.032 0.968 37 H 0.061 0.939 38 H 0.027 0.973 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 18.344 8.904 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.056 4.056 3 C -0.192 4.192 4 C -0.076 4.076 5 N -0.227 5.227 6 C -0.070 4.070 7 C -0.139 4.139 8 C -0.107 4.107 9 C -0.132 4.132 10 C -0.067 4.067 11 N -0.322 5.322 12 C 0.106 3.894 13 H 0.019 0.981 14 C -0.215 4.215 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.190 4.190 18 N -0.563 5.563 19 Si 0.786 3.214 20 H -0.209 1.209 21 H -0.196 1.196 22 H -0.200 1.200 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.178 0.822 27 H 0.193 0.807 28 H 0.176 0.824 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.148 0.852 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.833 17.894 8.800 20.776 hybrid contribution -1.648 -0.587 -0.436 1.803 sum 4.184 17.307 8.364 19.672 Atomic orbital electron populations 1.20949 0.88956 1.04124 1.03714 1.20565 0.97908 0.92483 0.94674 1.22340 0.95416 0.99476 1.01965 1.23188 0.92670 0.96473 0.95312 1.67670 1.42260 0.99327 1.13465 1.22888 0.91756 0.96519 0.95838 1.20883 0.94974 0.96298 1.01721 1.20451 1.00537 0.92836 0.96867 1.21400 1.00250 0.95381 0.96196 1.21928 0.97875 0.96895 0.89957 1.60653 1.49931 1.05023 1.16582 1.18934 0.88747 0.86489 0.95255 0.98136 1.22227 1.00975 1.01262 0.97013 1.21468 1.30439 1.04006 0.99815 0.92823 1.25730 0.95005 0.97653 1.00608 1.70003 1.34604 1.16517 1.35208 0.85575 0.78209 0.77506 0.80090 1.20922 1.19582 1.19978 0.89402 0.89644 0.91035 0.82188 0.80656 0.82379 0.89727 0.90200 0.92362 0.91692 0.95866 0.92915 0.85195 0.94917 0.92048 0.95441 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.31 71.24 0.66 -1.10 16 2 C -0.05 -0.91 5.92 -19.67 -0.12 -1.03 16 3 C -0.17 -2.87 9.82 22.36 0.22 -2.65 16 4 C 0.08 1.52 11.18 84.67 0.95 2.47 16 5 N -0.52 -12.71 10.36 -195.84 -2.03 -14.74 16 6 C 0.09 2.03 10.84 84.69 0.92 2.95 16 7 C -0.14 -2.97 5.15 -19.77 -0.10 -3.07 16 8 C -0.07 -1.46 4.68 29.85 0.14 -1.32 16 9 C -0.09 -2.48 5.29 30.59 0.16 -2.32 16 10 C 0.06 2.13 5.48 86.30 0.47 2.60 16 11 N -0.69 -29.10 6.23 -495.46 -3.09 -32.18 16 12 C 0.21 10.93 2.57 44.17 0.11 11.05 16 13 H 0.00 0.04 7.80 -2.39 -0.02 0.02 16 14 C -0.16 -7.44 8.94 71.98 0.64 -6.79 16 15 C -0.52 -29.22 8.84 25.60 0.23 -29.00 16 16 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.45 5.30 84.66 0.45 0.90 16 18 N -0.92 -53.60 11.32 21.45 0.24 -53.36 16 19 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 25 H 0.07 1.18 5.64 -2.39 -0.01 1.16 16 26 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 27 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 28 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.08 1.63 7.10 -2.39 -0.02 1.61 16 30 H 0.08 1.64 8.06 -2.39 -0.02 1.63 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.62 6.97 -2.38 -0.02 1.61 16 33 H 0.02 0.76 7.44 -2.39 -0.02 0.74 16 34 H 0.05 1.89 8.05 -2.39 -0.02 1.87 16 35 H 0.33 12.99 8.47 -89.69 -0.76 12.23 16 36 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 37 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 38 H 0.03 1.14 7.46 -2.38 -0.02 1.12 16 39 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -64.31 317.97 2.15 -62.15 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.27 Total: 19.12 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 4.74 Total: -27.32 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -4.87 Total: -100.28 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.31 2.15 -62.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309324885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.494 kcal (2) G-P(sol) polarization free energy of solvation -64.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds