Wall clock time and date at job start Mon Mar 30 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47477 * 2 1 4 4 C 1.53004 * 109.47263 * 120.00366 * 2 1 3 5 5 C 1.52995 * 109.47209 * 65.63547 * 4 2 1 6 6 H 1.09004 * 109.46778 * 174.34827 * 5 4 2 7 7 C 1.50700 * 109.47354 * 294.34702 * 5 4 2 8 8 H 1.07999 * 120.00347 * 114.34680 * 7 5 4 9 9 C 1.37881 * 119.99837 * 294.34461 * 7 5 4 10 10 N 1.31514 * 120.00167 * 353.36507 * 9 7 5 11 11 Si 1.86801 * 119.99654 * 173.35618 * 9 7 5 12 12 H 1.48502 * 109.46808 * 180.02562 * 11 9 7 13 13 H 1.48495 * 109.47398 * 300.00321 * 11 9 7 14 14 H 1.48504 * 109.47006 * 60.00712 * 11 9 7 15 15 N 1.46902 * 109.46932 * 54.34941 * 5 4 2 16 16 C 1.46894 * 111.00121 * 87.36062 * 15 5 4 17 17 C 1.50705 * 109.47156 * 185.12610 * 16 15 5 18 18 C 1.38674 * 120.41992 * 269.71889 * 17 16 15 19 19 C 1.38621 * 118.41896 * 179.77706 * 18 17 16 20 20 C 1.38228 * 119.16074 * 0.52411 * 19 18 17 21 21 N 1.31847 * 120.76355 * 359.71643 * 20 19 18 22 22 C 1.31882 * 121.72919 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46979 * 288.08631 * 1 2 3 24 24 H 1.08996 * 109.47238 * 48.08172 * 1 2 3 25 25 H 1.08999 * 109.47289 * 168.09062 * 1 2 3 26 26 H 1.09003 * 109.46994 * 239.99886 * 2 1 3 27 27 H 1.08999 * 109.46906 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46640 * 299.99910 * 3 2 1 29 29 H 1.08991 * 109.46842 * 60.00281 * 3 2 1 30 30 H 1.09002 * 109.46518 * 305.63763 * 4 2 1 31 31 H 1.09002 * 109.47177 * 185.63972 * 4 2 1 32 32 H 0.97006 * 119.99665 * 358.94024 * 10 9 7 33 33 H 1.00907 * 110.99516 * 211.31529 * 15 5 4 34 34 H 1.09002 * 109.47367 * 305.12527 * 16 15 5 35 35 H 1.09002 * 109.47632 * 65.12921 * 16 15 5 36 36 H 1.08002 * 120.78836 * 0.02810 * 18 17 16 37 37 H 1.08004 * 120.41647 * 180.21559 * 19 18 17 38 38 H 1.08009 * 119.61573 * 179.74438 * 20 19 18 39 39 H 1.08000 * 119.61859 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6490 -2.1989 1.1803 6 1 2.0971 -2.7327 2.0184 7 6 0.1489 -2.3253 1.2486 8 1 -0.4005 -2.7031 0.3990 9 6 -0.5224 -1.9585 2.3958 10 7 0.1523 -1.6229 3.4736 11 14 -2.3901 -1.9383 2.4189 12 1 -2.8639 -1.5111 3.7600 13 1 -2.8877 -0.9874 1.3926 14 1 -2.9036 -3.2998 2.1226 15 7 2.1321 -2.7749 -0.0818 16 6 3.5095 -3.2659 0.0568 17 6 4.0137 -3.7328 -1.2844 18 6 3.8394 -5.0504 -1.6803 19 6 4.3152 -5.4340 -2.9244 20 6 4.9530 -4.4997 -3.7189 21 7 5.1055 -3.2563 -3.3078 22 6 4.6611 -2.8549 -2.1327 23 1 -0.3633 0.3190 0.9769 24 1 -0.3633 0.6865 -0.7646 25 1 -0.3634 -1.0055 -0.2121 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.5965 -0.2691 2.1363 31 1 3.1253 -0.6347 1.3011 32 1 1.1220 -1.6481 3.4662 33 1 1.5175 -3.5078 -0.4033 34 1 4.1468 -2.4616 0.4246 35 1 3.5299 -4.0969 0.7619 36 1 3.3410 -5.7598 -1.0362 37 1 4.1937 -6.4511 -3.2666 38 1 5.3303 -4.7916 -4.6880 39 1 4.8041 -1.8280 -1.8303 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309331910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:00 Heat of formation + Delta-G solvation = 20.044013 kcal Electronic energy + Delta-G solvation = -18384.847390 eV Core-core repulsion = 15712.725217 eV Total energy + Delta-G solvation = -2672.122173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00582 -37.29474 -34.47183 -32.75298 -32.04029 -31.01484 -27.66398 -26.37508 -25.28390 -24.19124 -23.40800 -21.50165 -20.69179 -18.57279 -17.30759 -16.87936 -16.20791 -15.09390 -14.58100 -14.41564 -13.77250 -13.71047 -13.66006 -13.36180 -12.95400 -12.68898 -12.57639 -12.19999 -11.77052 -11.46725 -11.15748 -11.03555 -10.81526 -10.60677 -10.22789 -10.14169 -9.76358 -9.67886 -9.58687 -9.38672 -9.33227 -8.89388 -8.50985 -8.26775 -7.44201 -6.38230 -4.02744 1.23848 1.39294 3.40035 3.43507 3.59843 3.92617 4.48261 4.55638 4.89555 4.97835 5.10122 5.17955 5.32899 5.40610 5.52932 5.80926 5.89015 5.95613 5.97781 6.04793 6.08920 6.19985 6.45501 6.49533 6.54720 6.64269 6.82294 6.84801 6.91251 7.01863 7.12267 7.19394 7.45322 7.60147 7.77197 7.83953 8.03362 8.08700 8.41863 8.51317 8.81307 9.59290 10.98686 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.006169 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.985471 B = 4538.039550 C = 5102.894739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.096 4.096 5 C 0.204 3.796 6 H -0.006 1.006 7 C -0.586 4.586 8 H 0.055 0.945 9 C 0.027 3.973 10 N -0.908 5.908 11 Si 1.055 2.945 12 H -0.284 1.284 13 H -0.283 1.283 14 H -0.290 1.290 15 N -0.672 5.672 16 C 0.098 3.902 17 C -0.114 4.114 18 C -0.075 4.075 19 C -0.175 4.175 20 C 0.084 3.916 21 N -0.489 5.489 22 C 0.115 3.885 23 H 0.043 0.957 24 H 0.009 0.991 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.017 0.983 32 H 0.271 0.729 33 H 0.335 0.665 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 -4.083 -8.920 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.204 4.204 4 C -0.135 4.135 5 C 0.096 3.904 6 H 0.012 0.988 7 C -0.624 4.624 8 H 0.073 0.927 9 C -0.178 4.178 10 N -0.545 5.545 11 Si 0.884 3.116 12 H -0.209 1.209 13 H -0.210 1.210 14 H -0.216 1.216 15 N -0.303 5.303 16 C -0.032 4.032 17 C -0.116 4.116 18 C -0.101 4.101 19 C -0.195 4.195 20 C -0.073 4.073 21 N -0.197 5.197 22 C -0.042 4.042 23 H 0.063 0.937 24 H 0.028 0.972 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.836 -2.530 -8.733 10.804 hybrid contribution 0.748 -1.727 0.151 1.888 sum 6.584 -4.258 -8.582 11.625 Atomic orbital electron populations 1.22090 0.95264 1.02574 0.99011 1.20722 0.96352 0.92657 0.99054 1.21935 0.99559 0.98656 1.00251 1.21629 0.95959 0.98107 0.97795 1.19256 0.95444 0.90938 0.84786 0.98839 1.21805 0.90966 1.47660 1.02018 0.92658 1.25553 1.06349 0.93860 0.92016 1.70797 1.09654 1.45016 1.28990 0.83740 0.75108 0.76547 0.76228 1.20897 1.20973 1.21642 1.60647 1.00022 1.36144 1.33464 1.20837 0.93559 0.98284 0.90525 1.21036 0.98095 0.93953 0.98507 1.21536 0.96770 0.95885 0.95929 1.22066 1.00748 1.01092 0.95568 1.22665 0.96250 0.88942 0.99415 1.67679 1.18465 1.17623 1.15935 1.22658 0.93140 0.99694 0.88746 0.93743 0.97161 0.89268 0.91273 0.94176 0.94094 0.93719 0.91869 0.96432 0.91810 0.84789 0.90671 0.95186 0.85213 0.85224 0.83290 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 7.79 37.16 0.29 -2.59 16 2 C -0.07 -1.42 2.79 -90.62 -0.25 -1.67 16 3 C -0.15 -2.63 9.16 37.16 0.34 -2.29 16 4 C -0.10 -2.13 4.41 -26.73 -0.12 -2.25 16 5 C 0.20 4.65 1.93 -68.87 -0.13 4.52 16 6 H -0.01 -0.15 7.20 -51.93 -0.37 -0.52 16 7 C -0.59 -14.68 5.05 -34.44 -0.17 -14.85 16 8 H 0.06 1.40 6.89 -52.49 -0.36 1.04 16 9 C 0.03 0.72 4.39 -17.82 -0.08 0.64 16 10 N -0.91 -25.69 12.93 55.43 0.72 -24.97 16 11 Si 1.06 24.06 29.91 -169.99 -5.08 18.97 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 15 N -0.67 -13.03 5.16 -109.22 -0.56 -13.59 16 16 C 0.10 1.63 5.60 -4.98 -0.03 1.60 16 17 C -0.11 -1.68 5.45 -104.48 -0.57 -2.25 16 18 C -0.07 -0.98 9.86 -39.28 -0.39 -1.37 16 19 C -0.17 -2.02 10.11 -39.44 -0.40 -2.42 16 20 C 0.08 1.05 11.18 -17.55 -0.20 0.85 16 21 N -0.49 -7.29 10.36 -13.25 -0.14 -7.42 16 22 C 0.11 1.73 10.86 -17.55 -0.19 1.54 16 23 H 0.04 1.04 7.39 -51.93 -0.38 0.66 16 24 H 0.01 0.19 8.09 -51.93 -0.42 -0.23 16 25 H 0.09 2.07 5.04 -51.93 -0.26 1.81 16 26 H 0.07 1.44 7.26 -51.93 -0.38 1.06 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.57 6.23 -51.93 -0.32 1.25 16 31 H 0.02 0.36 7.67 -51.93 -0.40 -0.04 16 32 H 0.27 7.65 6.07 -40.82 -0.25 7.41 16 33 H 0.33 6.58 8.25 -39.29 -0.32 6.26 16 34 H 0.07 1.25 7.55 -51.93 -0.39 0.86 16 35 H 0.03 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 38 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 39 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -27.52 310.68 -8.32 -35.84 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.04 Total: 7.04 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.90 Total: -20.55 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.02 Total: -45.98 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.08 Total: 18.97 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.52 -8.32 -35.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309331910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.888 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds