Wall clock time and date at job start Mon Mar 30 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47477 * 2 1 4 4 C 1.53004 * 109.47263 * 120.00366 * 2 1 3 5 5 C 1.52995 * 109.47209 * 65.63547 * 4 2 1 6 6 H 1.09004 * 109.46778 * 174.34827 * 5 4 2 7 7 C 1.50700 * 109.47354 * 294.34702 * 5 4 2 8 8 H 1.07999 * 120.00347 * 114.34680 * 7 5 4 9 9 C 1.37881 * 119.99837 * 294.34461 * 7 5 4 10 10 N 1.31514 * 120.00167 * 353.36507 * 9 7 5 11 11 Si 1.86801 * 119.99654 * 173.35618 * 9 7 5 12 12 H 1.48502 * 109.46808 * 180.02562 * 11 9 7 13 13 H 1.48495 * 109.47398 * 300.00321 * 11 9 7 14 14 H 1.48504 * 109.47006 * 60.00712 * 11 9 7 15 15 N 1.46902 * 109.46932 * 54.34941 * 5 4 2 16 16 C 1.46894 * 111.00121 * 87.36062 * 15 5 4 17 17 C 1.50705 * 109.47156 * 185.12610 * 16 15 5 18 18 C 1.38674 * 120.41992 * 269.71889 * 17 16 15 19 19 C 1.38621 * 118.41896 * 179.77706 * 18 17 16 20 20 C 1.38228 * 119.16074 * 0.52411 * 19 18 17 21 21 N 1.31847 * 120.76355 * 359.71643 * 20 19 18 22 22 C 1.31882 * 121.72919 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46979 * 288.08631 * 1 2 3 24 24 H 1.08996 * 109.47238 * 48.08172 * 1 2 3 25 25 H 1.08999 * 109.47289 * 168.09062 * 1 2 3 26 26 H 1.09003 * 109.46994 * 239.99886 * 2 1 3 27 27 H 1.08999 * 109.46906 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46640 * 299.99910 * 3 2 1 29 29 H 1.08991 * 109.46842 * 60.00281 * 3 2 1 30 30 H 1.09002 * 109.46518 * 305.63763 * 4 2 1 31 31 H 1.09002 * 109.47177 * 185.63972 * 4 2 1 32 32 H 0.97006 * 119.99665 * 358.94024 * 10 9 7 33 33 H 1.00907 * 110.99516 * 211.31529 * 15 5 4 34 34 H 1.09002 * 109.47367 * 305.12527 * 16 15 5 35 35 H 1.09002 * 109.47632 * 65.12921 * 16 15 5 36 36 H 1.08002 * 120.78836 * 0.02810 * 18 17 16 37 37 H 1.08004 * 120.41647 * 180.21559 * 19 18 17 38 38 H 1.08009 * 119.61573 * 179.74438 * 20 19 18 39 39 H 1.08000 * 119.61859 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6490 -2.1989 1.1803 6 1 2.0971 -2.7327 2.0184 7 6 0.1489 -2.3253 1.2486 8 1 -0.4005 -2.7031 0.3990 9 6 -0.5224 -1.9585 2.3958 10 7 0.1523 -1.6229 3.4736 11 14 -2.3901 -1.9383 2.4189 12 1 -2.8639 -1.5111 3.7600 13 1 -2.8877 -0.9874 1.3926 14 1 -2.9036 -3.2998 2.1226 15 7 2.1321 -2.7749 -0.0818 16 6 3.5095 -3.2659 0.0568 17 6 4.0137 -3.7328 -1.2844 18 6 3.8394 -5.0504 -1.6803 19 6 4.3152 -5.4340 -2.9244 20 6 4.9530 -4.4997 -3.7189 21 7 5.1055 -3.2563 -3.3078 22 6 4.6611 -2.8549 -2.1327 23 1 -0.3633 0.3190 0.9769 24 1 -0.3633 0.6865 -0.7646 25 1 -0.3634 -1.0055 -0.2121 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.5965 -0.2691 2.1363 31 1 3.1253 -0.6347 1.3011 32 1 1.1220 -1.6481 3.4662 33 1 1.5175 -3.5078 -0.4033 34 1 4.1468 -2.4616 0.4246 35 1 3.5299 -4.0969 0.7619 36 1 3.3410 -5.7598 -1.0362 37 1 4.1937 -6.4511 -3.2666 38 1 5.3303 -4.7916 -4.6880 39 1 4.8041 -1.8280 -1.8303 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309331910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:00 Heat of formation + Delta-G solvation = 4.412812 kcal Electronic energy + Delta-G solvation = -18385.525210 eV Core-core repulsion = 15712.725217 eV Total energy + Delta-G solvation = -2672.799993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06627 -39.02099 -35.92437 -34.58487 -33.21323 -32.29988 -29.25681 -28.16428 -26.84059 -25.82622 -24.44484 -22.79429 -22.39055 -20.30883 -19.10861 -17.94437 -17.35294 -16.39834 -16.30203 -15.85744 -15.59204 -15.27411 -14.96716 -14.67109 -14.11677 -14.06263 -13.93276 -13.66755 -13.56182 -13.07249 -12.82720 -12.56910 -12.52592 -12.30208 -12.00155 -11.86124 -11.43665 -11.31164 -11.13299 -10.76224 -10.50281 -10.41939 -10.23340 -9.90929 -9.09168 -8.48225 -6.11355 0.20554 0.36329 1.55245 1.61267 1.77970 2.59972 2.87335 3.30176 3.52578 3.69969 3.88934 3.99646 4.11944 4.14120 4.25909 4.34752 4.44119 4.50541 4.63319 4.79560 4.86295 4.90219 4.92259 5.02034 5.11577 5.19254 5.21514 5.24494 5.37515 5.39085 5.42752 5.65946 5.81177 5.84422 5.95472 6.00233 6.17665 6.52516 6.64721 6.83923 7.05412 7.57464 8.89169 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.006169 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.985471 B = 4538.039550 C = 5102.894739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.088 4.088 5 C 0.209 3.791 6 H -0.038 1.038 7 C -0.576 4.576 8 H 0.054 0.946 9 C -0.015 4.015 10 N -0.939 5.939 11 Si 1.090 2.910 12 H -0.293 1.293 13 H -0.269 1.269 14 H -0.274 1.274 15 N -0.665 5.665 16 C 0.105 3.895 17 C -0.127 4.127 18 C -0.080 4.080 19 C -0.165 4.165 20 C 0.082 3.918 21 N -0.511 5.511 22 C 0.102 3.898 23 H 0.019 0.981 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.026 0.974 32 H 0.258 0.742 33 H 0.333 0.667 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.141 0.859 37 H 0.166 0.834 38 H 0.182 0.818 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 -4.841 -11.220 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.083 4.083 3 C -0.198 4.198 4 C -0.127 4.127 5 C 0.100 3.900 6 H -0.021 1.021 7 C -0.614 4.614 8 H 0.072 0.928 9 C -0.214 4.214 10 N -0.577 5.577 11 Si 0.914 3.086 12 H -0.219 1.219 13 H -0.194 1.194 14 H -0.199 1.199 15 N -0.296 5.296 16 C -0.024 4.024 17 C -0.130 4.130 18 C -0.107 4.107 19 C -0.184 4.184 20 C -0.075 4.075 21 N -0.220 5.220 22 C -0.055 4.055 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.151 0.849 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.159 0.841 37 H 0.184 0.816 38 H 0.199 0.801 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.990 -3.295 -11.058 13.000 hybrid contribution 0.777 -1.579 0.774 1.923 sum 6.767 -4.874 -10.283 13.240 Atomic orbital electron populations 1.21959 0.96091 1.01985 0.98222 1.20672 0.95549 0.94310 0.97815 1.21858 1.00460 0.96630 1.00878 1.21485 0.96259 0.97464 0.97486 1.19075 0.94302 0.91437 0.85196 1.02097 1.22008 0.92095 1.45975 1.01367 0.92838 1.26594 1.09327 0.93568 0.91949 1.70897 1.08983 1.47625 1.30187 0.83284 0.71621 0.77616 0.76056 1.21888 1.19450 1.19925 1.60575 1.01353 1.36446 1.31184 1.20739 0.91707 0.97950 0.92033 1.20809 0.99520 0.95051 0.97580 1.21782 0.96659 0.95279 0.96949 1.22434 0.98989 1.02616 0.94348 1.23298 0.95349 0.88163 1.00651 1.67703 1.19222 1.19207 1.15841 1.22653 0.93791 0.99828 0.89211 0.96206 0.94863 0.90925 0.91146 0.92801 0.92104 0.94417 0.94956 0.95568 0.93123 0.84939 0.91182 0.95466 0.84078 0.81628 0.80063 0.83132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 7.79 71.98 0.56 -4.81 16 2 C -0.06 -2.61 2.79 -10.79 -0.03 -2.64 16 3 C -0.14 -4.81 9.16 71.98 0.66 -4.15 16 4 C -0.09 -3.97 4.41 30.59 0.13 -3.84 16 5 C 0.21 9.75 1.93 44.17 0.09 9.83 16 6 H -0.04 -2.03 7.20 -2.38 -0.02 -2.04 16 7 C -0.58 -29.20 5.05 25.60 0.13 -29.07 16 8 H 0.05 2.70 6.89 -2.91 -0.02 2.68 16 9 C -0.02 -0.81 4.39 84.66 0.37 -0.44 16 10 N -0.94 -54.74 12.93 21.45 0.28 -54.47 16 11 Si 1.09 48.57 29.91 68.60 2.05 50.62 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 15 N -0.67 -25.83 5.16 -499.46 -2.58 -28.41 16 16 C 0.11 3.51 5.60 85.56 0.48 3.99 16 17 C -0.13 -3.66 5.45 -19.77 -0.11 -3.76 16 18 C -0.08 -1.93 9.86 22.47 0.22 -1.71 16 19 C -0.16 -3.23 10.11 22.36 0.23 -3.00 16 20 C 0.08 1.78 11.18 84.69 0.95 2.73 16 21 N -0.51 -14.31 10.36 -195.84 -2.03 -16.34 16 22 C 0.10 2.97 10.86 84.67 0.92 3.89 16 23 H 0.02 0.91 7.39 -2.39 -0.02 0.89 16 24 H 0.03 1.23 8.09 -2.39 -0.02 1.21 16 25 H 0.07 3.32 5.04 -2.39 -0.01 3.31 16 26 H 0.07 2.84 7.26 -2.39 -0.02 2.82 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.65 6.23 -2.39 -0.01 1.64 16 31 H 0.03 1.10 7.67 -2.39 -0.02 1.08 16 32 H 0.26 15.30 6.07 -92.70 -0.56 14.73 16 33 H 0.33 13.02 8.25 -89.69 -0.74 12.28 16 34 H 0.07 2.37 7.55 -2.39 -0.02 2.35 16 35 H 0.03 0.92 8.09 -2.39 -0.02 0.90 16 36 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -59.90 310.68 2.81 -57.08 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.49 Total: 24.49 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 4.60 Total: -32.98 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.33 Total: -99.22 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.05 Total: 50.62 kcal Total: -59.90 2.81 -57.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309331910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.496 kcal (2) G-P(sol) polarization free energy of solvation -59.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds