Wall clock time and date at job start Mon Mar 30 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47221 * 2 1 4 4 C 1.52995 * 109.46879 * 120.00304 * 2 1 3 5 5 C 1.52999 * 109.47543 * 65.88374 * 4 2 1 6 6 H 1.09008 * 109.46603 * 305.39567 * 5 4 2 7 7 C 1.50693 * 109.47489 * 185.40032 * 5 4 2 8 8 H 1.08001 * 120.00153 * 119.71774 * 7 5 4 9 9 C 1.37878 * 120.00253 * 300.00099 * 7 5 4 10 10 N 1.31523 * 119.99486 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 120.00335 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47052 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47012 * 119.99615 * 11 9 7 14 14 H 1.48506 * 109.46969 * 239.99499 * 11 9 7 15 15 N 1.46900 * 109.47317 * 65.39440 * 5 4 2 16 16 C 1.46899 * 111.00189 * 205.00358 * 15 5 4 17 17 C 1.50701 * 109.47189 * 180.02562 * 16 15 5 18 18 C 1.38675 * 120.41539 * 269.72292 * 17 16 15 19 19 C 1.38625 * 118.41732 * 179.78586 * 18 17 16 20 20 C 1.38233 * 119.16280 * 0.50412 * 19 18 17 21 21 N 1.31852 * 120.75941 * 359.73672 * 20 19 18 22 22 C 1.31882 * 121.73002 * 359.97438 * 21 20 19 23 23 H 1.09007 * 109.46875 * 300.00047 * 1 2 3 24 24 H 1.09005 * 109.47058 * 59.99435 * 1 2 3 25 25 H 1.08992 * 109.47026 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46927 * 240.00221 * 2 1 3 27 27 H 1.08998 * 109.47010 * 180.34653 * 3 2 1 28 28 H 1.09000 * 109.47224 * 300.34773 * 3 2 1 29 29 H 1.09001 * 109.47473 * 60.34755 * 3 2 1 30 30 H 1.08996 * 109.47226 * 305.87656 * 4 2 1 31 31 H 1.09004 * 109.46983 * 185.88177 * 4 2 1 32 32 H 0.96998 * 119.99919 * 180.02562 * 10 9 7 33 33 H 1.00901 * 110.99739 * 81.04811 * 15 5 4 34 34 H 1.09000 * 109.47009 * 300.00285 * 16 15 5 35 35 H 1.08998 * 109.46908 * 59.99972 * 16 15 5 36 36 H 1.08000 * 120.79105 * 0.02562 * 18 17 16 37 37 H 1.08005 * 120.41824 * 180.21781 * 19 18 17 38 38 H 1.08001 * 119.61704 * 179.75122 * 20 19 18 39 39 H 1.07995 * 119.61966 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6543 -2.2001 1.1774 6 1 0.5783 -2.2881 1.0269 7 6 2.0387 -2.8826 2.4648 8 1 1.2810 -3.3531 3.0738 9 6 3.3571 -2.9014 2.8682 10 7 4.2791 -2.3241 2.1291 11 14 3.8337 -3.7480 4.4637 12 1 2.6204 -4.3161 5.1042 13 1 4.7990 -4.8392 4.1758 14 1 4.4606 -2.7613 5.3795 15 7 2.3592 -2.8362 0.0565 16 6 1.6277 -4.0161 -0.4240 17 6 2.3798 -4.6408 -1.5708 18 6 2.1228 -4.2482 -2.8757 19 6 2.8419 -4.8470 -3.8985 20 6 3.7770 -5.8161 -3.5867 21 7 3.9915 -6.1680 -2.3342 22 6 3.3302 -5.6159 -1.3356 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0062 28 1 1.6717 1.9581 -0.8868 29 1 1.6819 1.9545 0.8931 30 1 1.5933 -0.2719 2.1360 31 1 3.1249 -0.6310 1.3034 32 1 5.2067 -2.3377 2.4126 33 1 3.3047 -3.0770 0.3139 34 1 1.5336 -4.7398 0.3857 35 1 0.6352 -3.7161 -0.7603 36 1 1.3828 -3.4912 -3.0898 37 1 2.6704 -4.5632 -4.9264 38 1 4.3385 -6.2902 -4.3781 39 1 3.5335 -5.9298 -0.3225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309331911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:02 Heat of formation + Delta-G solvation = 13.475311 kcal Electronic energy + Delta-G solvation = -18330.429479 eV Core-core repulsion = 15658.022466 eV Total energy + Delta-G solvation = -2672.407014 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74160 -36.81851 -34.36879 -32.87090 -31.71083 -30.59800 -27.87126 -26.46619 -24.99743 -24.35743 -23.16068 -21.14399 -20.68165 -18.67626 -16.74521 -16.44051 -15.88374 -15.20401 -14.71712 -14.14117 -13.83888 -13.62006 -13.24087 -12.99795 -12.81465 -12.68378 -12.55894 -11.95356 -11.61362 -11.41967 -11.24386 -11.03213 -10.75025 -10.67851 -10.55760 -10.32610 -9.85988 -9.52196 -9.45743 -9.37099 -9.10628 -9.03186 -8.65417 -8.43720 -6.92263 -6.02439 -4.21526 1.48112 1.66215 3.22159 3.32299 3.35317 4.17688 4.34847 4.78717 5.11559 5.14551 5.30617 5.38021 5.45739 5.79146 5.79748 5.83194 5.87740 6.04699 6.12789 6.21776 6.30122 6.43789 6.44488 6.49771 6.53553 6.59638 6.82371 6.87876 6.91380 6.94007 7.08532 7.13856 7.51756 7.65717 7.74710 8.02168 8.20953 8.31506 8.52521 8.91024 9.11455 9.51065 10.90856 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.008606 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.138603 B = 3252.800361 C = 4706.183778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.090 4.090 5 C 0.210 3.790 6 H 0.024 0.976 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.073 3.927 10 N -0.881 5.881 11 Si 0.885 3.115 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.283 1.283 15 N -0.678 5.678 16 C 0.102 3.898 17 C -0.108 4.108 18 C -0.063 4.063 19 C -0.178 4.178 20 C 0.079 3.921 21 N -0.489 5.489 22 C 0.102 3.898 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.263 0.737 33 H 0.361 0.639 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.147 0.853 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 -0.696 -8.658 9.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.129 4.129 5 C 0.102 3.898 6 H 0.042 0.958 7 C -0.590 4.590 8 H 0.069 0.931 9 C -0.130 4.130 10 N -0.520 5.520 11 Si 0.713 3.287 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.209 1.209 15 N -0.314 5.314 16 C -0.028 4.028 17 C -0.110 4.110 18 C -0.090 4.090 19 C -0.198 4.198 20 C -0.078 4.078 21 N -0.197 5.197 22 C -0.056 4.056 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.184 0.816 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.074 -0.872 -8.934 9.488 hybrid contribution -0.086 -0.359 1.488 1.533 sum -3.160 -1.231 -7.447 8.182 Atomic orbital electron populations 1.21836 0.97343 1.00986 0.99525 1.21148 0.93972 0.94552 1.01688 1.21829 1.00735 0.97586 0.99748 1.21524 1.03361 0.95144 0.92825 1.19118 0.92044 0.91424 0.87187 0.95798 1.21887 0.93156 1.36012 1.07942 0.93065 1.24985 0.96661 0.94713 0.96664 1.69736 1.01329 1.43248 1.37662 0.86654 0.78510 0.79480 0.84076 1.19936 1.20935 1.20912 1.61059 1.07910 1.23653 1.38730 1.20685 0.95906 0.93748 0.92484 1.21164 0.97602 0.96193 0.96066 1.21465 0.98118 0.97334 0.92085 1.22062 0.98693 0.98990 1.00071 1.22604 0.96128 0.95369 0.93731 1.67641 1.24869 1.26954 1.00270 1.22722 0.91712 0.92969 0.98151 0.93926 0.94651 0.92820 0.90790 0.93180 0.94432 0.93836 0.94836 0.89259 0.92658 0.81581 0.94605 0.92129 0.85110 0.85471 0.83565 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.97 37.16 0.33 -2.03 16 2 C -0.10 -1.80 2.87 -90.62 -0.26 -2.06 16 3 C -0.14 -2.39 9.19 37.15 0.34 -2.05 16 4 C -0.09 -2.03 4.04 -26.73 -0.11 -2.13 16 5 C 0.21 4.89 2.10 -68.87 -0.14 4.75 16 6 H 0.02 0.55 6.02 -51.92 -0.31 0.23 16 7 C -0.55 -14.23 8.64 -34.44 -0.30 -14.53 16 8 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 9 C 0.07 1.87 5.03 -17.82 -0.09 1.78 16 10 N -0.88 -23.09 9.71 55.43 0.54 -22.55 16 11 Si 0.88 20.47 29.54 -169.99 -5.02 15.45 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 N -0.68 -14.90 5.61 -109.22 -0.61 -15.52 16 16 C 0.10 1.96 5.63 -4.98 -0.03 1.93 16 17 C -0.11 -1.88 5.41 -104.48 -0.57 -2.45 16 18 C -0.06 -0.96 9.86 -39.28 -0.39 -1.35 16 19 C -0.18 -2.39 10.11 -39.44 -0.40 -2.79 16 20 C 0.08 1.14 11.18 -17.54 -0.20 0.94 16 21 N -0.49 -8.46 10.36 -13.25 -0.14 -8.60 16 22 C 0.10 1.82 10.86 -17.55 -0.19 1.63 16 23 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.93 6.48 -51.93 -0.34 0.60 16 26 H 0.07 1.49 7.61 -51.93 -0.40 1.09 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 2.26 6.23 -51.93 -0.32 1.93 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.36 8.88 6.38 -39.29 -0.25 8.62 16 34 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 35 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 36 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.15 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -26.40 316.33 -8.68 -35.08 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.22 Total: 9.73 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.99 Total: -18.36 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.21 Total: -46.67 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.40 -8.68 -35.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309331911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.553 kcal (2) G-P(sol) polarization free energy of solvation -26.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds