Wall clock time and date at job start Mon Mar 30 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47221 * 2 1 4 4 C 1.52995 * 109.46879 * 120.00304 * 2 1 3 5 5 C 1.52999 * 109.47543 * 65.88374 * 4 2 1 6 6 H 1.09008 * 109.46603 * 305.39567 * 5 4 2 7 7 C 1.50693 * 109.47489 * 185.40032 * 5 4 2 8 8 H 1.08001 * 120.00153 * 119.71774 * 7 5 4 9 9 C 1.37878 * 120.00253 * 300.00099 * 7 5 4 10 10 N 1.31523 * 119.99486 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 120.00335 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47052 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47012 * 119.99615 * 11 9 7 14 14 H 1.48506 * 109.46969 * 239.99499 * 11 9 7 15 15 N 1.46900 * 109.47317 * 65.39440 * 5 4 2 16 16 C 1.46899 * 111.00189 * 205.00358 * 15 5 4 17 17 C 1.50701 * 109.47189 * 180.02562 * 16 15 5 18 18 C 1.38675 * 120.41539 * 269.72292 * 17 16 15 19 19 C 1.38625 * 118.41732 * 179.78586 * 18 17 16 20 20 C 1.38233 * 119.16280 * 0.50412 * 19 18 17 21 21 N 1.31852 * 120.75941 * 359.73672 * 20 19 18 22 22 C 1.31882 * 121.73002 * 359.97438 * 21 20 19 23 23 H 1.09007 * 109.46875 * 300.00047 * 1 2 3 24 24 H 1.09005 * 109.47058 * 59.99435 * 1 2 3 25 25 H 1.08992 * 109.47026 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46927 * 240.00221 * 2 1 3 27 27 H 1.08998 * 109.47010 * 180.34653 * 3 2 1 28 28 H 1.09000 * 109.47224 * 300.34773 * 3 2 1 29 29 H 1.09001 * 109.47473 * 60.34755 * 3 2 1 30 30 H 1.08996 * 109.47226 * 305.87656 * 4 2 1 31 31 H 1.09004 * 109.46983 * 185.88177 * 4 2 1 32 32 H 0.96998 * 119.99919 * 180.02562 * 10 9 7 33 33 H 1.00901 * 110.99739 * 81.04811 * 15 5 4 34 34 H 1.09000 * 109.47009 * 300.00285 * 16 15 5 35 35 H 1.08998 * 109.46908 * 59.99972 * 16 15 5 36 36 H 1.08000 * 120.79105 * 0.02562 * 18 17 16 37 37 H 1.08005 * 120.41824 * 180.21781 * 19 18 17 38 38 H 1.08001 * 119.61704 * 179.75122 * 20 19 18 39 39 H 1.07995 * 119.61966 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6543 -2.2001 1.1774 6 1 0.5783 -2.2881 1.0269 7 6 2.0387 -2.8826 2.4648 8 1 1.2810 -3.3531 3.0738 9 6 3.3571 -2.9014 2.8682 10 7 4.2791 -2.3241 2.1291 11 14 3.8337 -3.7480 4.4637 12 1 2.6204 -4.3161 5.1042 13 1 4.7990 -4.8392 4.1758 14 1 4.4606 -2.7613 5.3795 15 7 2.3592 -2.8362 0.0565 16 6 1.6277 -4.0161 -0.4240 17 6 2.3798 -4.6408 -1.5708 18 6 2.1228 -4.2482 -2.8757 19 6 2.8419 -4.8470 -3.8985 20 6 3.7770 -5.8161 -3.5867 21 7 3.9915 -6.1680 -2.3342 22 6 3.3302 -5.6159 -1.3356 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0062 28 1 1.6717 1.9581 -0.8868 29 1 1.6819 1.9545 0.8931 30 1 1.5933 -0.2719 2.1360 31 1 3.1249 -0.6310 1.3034 32 1 5.2067 -2.3377 2.4126 33 1 3.3047 -3.0770 0.3139 34 1 1.5336 -4.7398 0.3857 35 1 0.6352 -3.7161 -0.7603 36 1 1.3828 -3.4912 -3.0898 37 1 2.6704 -4.5632 -4.9264 38 1 4.3385 -6.2902 -4.3781 39 1 3.5335 -5.9298 -0.3225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309331911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:02 Heat of formation + Delta-G solvation = -0.921753 kcal Electronic energy + Delta-G solvation = -18331.053783 eV Core-core repulsion = 15658.022466 eV Total energy + Delta-G solvation = -2673.031317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98471 -38.52483 -35.88744 -34.58890 -33.03603 -32.12569 -29.51065 -27.83348 -26.90188 -25.82765 -24.38887 -22.58908 -22.35906 -20.29787 -18.38130 -17.91555 -17.22259 -16.97531 -16.11936 -15.78332 -15.38769 -15.11600 -14.67570 -14.45084 -14.36236 -14.06233 -13.84214 -13.63354 -12.98683 -12.95294 -12.86342 -12.72026 -12.56545 -12.46164 -12.06611 -11.91704 -11.62001 -11.22680 -11.12157 -10.89022 -10.64455 -10.42834 -10.30679 -9.86119 -8.74349 -7.99608 -6.26669 0.26239 0.44970 1.34460 1.40022 1.47657 2.39832 2.93155 3.12586 3.60518 3.94307 4.03996 4.16444 4.22231 4.33597 4.34580 4.41001 4.47108 4.68677 4.79170 4.92057 4.92992 4.97425 5.00620 5.06682 5.12180 5.21955 5.27418 5.31349 5.47078 5.50046 5.54266 5.67130 5.85546 5.88193 5.94251 6.13043 6.26442 6.61866 6.98993 7.08913 7.19027 7.48761 8.88718 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.008606 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.138603 B = 3252.800361 C = 4706.183778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.081 4.081 5 C 0.210 3.790 6 H 0.025 0.975 7 C -0.570 4.570 8 H 0.036 0.964 9 C 0.039 3.961 10 N -0.893 5.893 11 Si 0.936 3.064 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.281 1.281 15 N -0.673 5.673 16 C 0.108 3.892 17 C -0.124 4.124 18 C -0.066 4.066 19 C -0.163 4.163 20 C 0.077 3.923 21 N -0.513 5.513 22 C 0.080 3.920 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.262 0.738 33 H 0.346 0.654 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.183 0.817 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 -0.208 -10.830 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 C -0.194 4.194 4 C -0.120 4.120 5 C 0.102 3.898 6 H 0.043 0.957 7 C -0.609 4.609 8 H 0.055 0.945 9 C -0.163 4.163 10 N -0.532 5.532 11 Si 0.763 3.237 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.207 1.207 15 N -0.306 5.306 16 C -0.022 4.022 17 C -0.127 4.127 18 C -0.092 4.092 19 C -0.183 4.183 20 C -0.081 4.081 21 N -0.222 5.222 22 C -0.076 4.076 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.166 0.834 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.167 0.833 37 H 0.188 0.812 38 H 0.200 0.800 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.584 -0.384 -11.103 11.674 hybrid contribution 0.065 -0.546 2.075 2.146 sum -3.519 -0.930 -9.029 9.735 Atomic orbital electron populations 1.21756 0.95455 1.00850 1.00982 1.21034 0.95511 0.95295 0.98972 1.21767 1.00076 0.96314 1.01243 1.21356 1.01268 0.95155 0.94231 1.19092 0.92094 0.91922 0.86699 0.95706 1.22116 0.93183 1.36570 1.09073 0.94518 1.25476 0.96635 0.95259 0.98925 1.69846 1.01283 1.43600 1.38445 0.85852 0.77930 0.78594 0.81278 1.20133 1.20787 1.20674 1.61032 1.07040 1.24925 1.37604 1.20633 0.96547 0.92328 0.92671 1.20980 0.98205 0.96909 0.96587 1.21745 0.98551 0.97574 0.91346 1.22487 0.96838 0.97309 1.01616 1.23301 0.96190 0.95263 0.93328 1.67632 1.25404 1.27723 1.01403 1.22561 0.92855 0.94103 0.98064 0.93670 0.91949 0.93772 0.91836 0.94247 0.91753 0.93455 0.96310 0.92268 0.92793 0.83374 0.96777 0.90825 0.83302 0.81187 0.80020 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.97 71.98 0.65 -3.60 16 2 C -0.09 -3.30 2.87 -10.79 -0.03 -3.33 16 3 C -0.14 -4.38 9.19 71.98 0.66 -3.72 16 4 C -0.08 -3.73 4.04 30.59 0.12 -3.60 16 5 C 0.21 10.02 2.10 44.17 0.09 10.11 16 6 H 0.02 1.16 6.02 -2.38 -0.01 1.14 16 7 C -0.57 -30.39 8.64 25.60 0.22 -30.17 16 8 H 0.04 2.01 7.81 -2.91 -0.02 1.98 16 9 C 0.04 2.03 5.03 84.65 0.43 2.46 16 10 N -0.89 -47.99 9.71 21.45 0.21 -47.78 16 11 Si 0.94 42.91 29.54 68.60 2.03 44.94 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 15 N -0.67 -30.22 5.61 -499.47 -2.80 -33.02 16 16 C 0.11 4.23 5.63 85.56 0.48 4.72 16 17 C -0.12 -4.33 5.41 -19.77 -0.11 -4.44 16 18 C -0.07 -1.84 9.86 22.47 0.22 -1.62 16 19 C -0.16 -3.77 10.11 22.36 0.23 -3.54 16 20 C 0.08 1.99 11.18 84.69 0.95 2.94 16 21 N -0.51 -17.40 10.36 -195.84 -2.03 -19.43 16 22 C 0.08 2.95 10.86 84.67 0.92 3.87 16 23 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.04 1.47 6.48 -2.39 -0.02 1.46 16 26 H 0.06 2.48 7.61 -2.39 -0.02 2.46 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 3.07 6.23 -2.38 -0.01 3.05 16 32 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 33 H 0.35 17.55 6.38 -89.69 -0.57 16.98 16 34 H 0.01 0.60 7.95 -2.39 -0.02 0.58 16 35 H 0.07 2.63 8.01 -2.39 -0.02 2.61 16 36 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.18 3.31 8.06 -2.91 -0.02 3.28 16 39 H 0.13 5.15 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -58.05 316.33 2.68 -55.37 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.44 Total: 29.86 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.83 Total: -29.94 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.62 Total: -100.23 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -58.05 2.68 -55.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309331911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.446 kcal (2) G-P(sol) polarization free energy of solvation -58.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds