Wall clock time and date at job start Mon Mar 30 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46720 * 2 1 4 4 C 1.52999 * 109.47187 * 120.00115 * 2 1 3 5 5 H 1.08999 * 109.47264 * 295.55436 * 4 2 1 6 6 N 1.46903 * 109.47236 * 55.56147 * 4 2 1 7 7 C 1.46897 * 110.99752 * 201.23394 * 6 4 2 8 8 C 1.53001 * 109.47025 * 174.79779 * 7 6 4 9 9 C 1.50699 * 109.47239 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99880 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00203 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99702 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00067 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46795 * 90.00026 * 13 11 9 15 15 H 1.48502 * 109.46871 * 209.99988 * 13 11 9 16 16 H 1.48503 * 109.46954 * 330.00087 * 13 11 9 17 17 C 1.50709 * 109.46500 * 175.55546 * 4 2 1 18 18 C 1.38670 * 120.41527 * 100.00788 * 17 4 2 19 19 C 1.38624 * 118.42010 * 180.02562 * 18 17 4 20 20 C 1.38231 * 119.15906 * 359.97438 * 19 18 17 21 21 N 1.31847 * 120.76422 * 359.97438 * 20 19 18 22 22 C 1.31887 * 121.72713 * 359.70747 * 21 20 19 23 23 H 1.09007 * 109.46830 * 294.96459 * 1 2 3 24 24 H 1.08998 * 109.47630 * 54.96221 * 1 2 3 25 25 H 1.09003 * 109.46968 * 174.97126 * 1 2 3 26 26 H 1.08996 * 109.46726 * 240.00380 * 2 1 3 27 27 H 1.09004 * 109.47054 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47224 * 300.00035 * 3 2 1 29 29 H 1.08996 * 109.47211 * 60.00677 * 3 2 1 30 30 H 1.00893 * 111.00181 * 77.27051 * 6 4 2 31 31 H 1.08995 * 109.47541 * 54.79313 * 7 6 4 32 32 H 1.09001 * 109.47023 * 294.79395 * 7 6 4 33 33 H 1.09001 * 109.46906 * 299.99687 * 8 7 6 34 34 H 1.08995 * 109.47341 * 59.99412 * 8 7 6 35 35 H 0.96999 * 119.99548 * 180.02562 * 12 11 9 36 36 H 1.08002 * 120.79366 * 359.97055 * 18 17 4 37 37 H 1.08007 * 120.42260 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.61616 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.61846 * 180.30679 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7432 -0.1635 2.1374 6 7 1.4648 -2.0719 1.3040 7 6 1.5015 -2.6045 2.6725 8 6 0.7798 -3.9530 2.7145 9 6 0.8179 -4.4997 4.1183 10 1 1.3082 -3.9414 4.9021 11 6 0.2269 -5.7126 4.4020 12 7 -0.3706 -6.3922 3.4476 13 14 0.2747 -6.3906 6.1420 14 1 -0.9165 -5.9162 6.8910 15 1 0.2713 -7.8749 6.0951 16 1 1.5075 -5.9197 6.8230 17 6 3.5431 -0.8172 1.1952 18 6 4.3295 0.0708 1.9134 19 6 5.7077 -0.0547 1.8334 20 6 6.2484 -1.0542 1.0463 21 7 5.4696 -1.8817 0.3777 22 6 4.1548 -1.7958 0.4352 23 1 -0.3633 0.4338 0.9317 24 1 -0.3634 0.5900 -0.8414 25 1 -0.3633 -1.0237 -0.0901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.9355 -2.6917 0.6619 31 1 1.0065 -1.9064 3.3475 32 1 2.5378 -2.7372 2.9831 33 1 -0.2565 -3.8202 2.4039 34 1 1.2748 -4.6511 2.0395 35 1 -0.7867 -7.2453 3.6474 36 1 3.8790 0.8425 2.5200 37 1 6.3510 0.6193 2.3797 38 1 7.3212 -1.1585 0.9783 39 1 3.5493 -2.4948 -0.1227 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309363944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:28 Heat of formation + Delta-G solvation = 14.047109 kcal Electronic energy + Delta-G solvation = -18002.401986 eV Core-core repulsion = 15330.019767 eV Total energy + Delta-G solvation = -2672.382219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42306 -37.45786 -34.35731 -32.68359 -32.37604 -31.14470 -28.94102 -26.88735 -25.61400 -23.93545 -23.28027 -22.08137 -20.60340 -19.65333 -17.30535 -16.46506 -16.08516 -15.62290 -15.02278 -14.55273 -14.37500 -14.31915 -13.79447 -13.36819 -13.07861 -12.87577 -12.58250 -12.24946 -12.09994 -11.96104 -11.72439 -11.18374 -11.00615 -10.91083 -10.81128 -10.60005 -10.51104 -10.01191 -9.76779 -9.42160 -9.38096 -9.16417 -8.87220 -8.34359 -7.90638 -5.98890 -4.01319 1.11912 1.29389 3.32522 3.38629 3.41826 3.82376 4.36673 4.43106 4.59158 4.76348 4.83740 4.96415 5.07414 5.12660 5.15993 5.37193 5.40867 5.50822 5.60863 5.72938 5.79632 5.87446 5.97869 6.04587 6.08305 6.18281 6.23997 6.29529 6.42904 6.47049 6.67014 6.69838 6.97592 7.43483 7.71562 7.78500 7.92676 7.99294 8.08185 8.44073 9.05753 9.62396 11.12513 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020954 B = 0.005508 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.934757 B = 5082.016867 C = 5890.426136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 C -0.147 4.147 4 C 0.132 3.868 5 H 0.085 0.915 6 N -0.676 5.676 7 C 0.067 3.933 8 C 0.027 3.973 9 C -0.521 4.521 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.149 4.149 18 C -0.071 4.071 19 C -0.173 4.173 20 C 0.087 3.913 21 N -0.481 5.481 22 C 0.103 3.897 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.335 0.665 31 H 0.058 0.942 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 15.469 -6.316 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C -0.205 4.205 4 C 0.020 3.980 5 H 0.103 0.897 6 N -0.306 5.306 7 C -0.061 4.061 8 C -0.010 4.010 9 C -0.560 4.560 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.153 4.153 18 C -0.097 4.097 19 C -0.193 4.193 20 C -0.070 4.070 21 N -0.189 5.189 22 C -0.055 4.055 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.169 0.831 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.944 14.847 -6.806 18.162 hybrid contribution 0.697 0.005 1.710 1.846 sum 8.640 14.852 -5.096 17.923 Atomic orbital electron populations 1.21665 0.93966 1.02992 1.00502 1.21058 0.96864 0.94900 0.96990 1.21871 1.00714 0.96317 1.01612 1.20704 0.85469 0.92883 0.98911 0.89706 1.60813 1.57911 1.01822 1.10022 1.22181 0.98168 0.99162 0.86586 1.19038 0.96119 0.89204 0.96638 1.21164 1.35629 1.04441 0.94803 0.92906 1.24987 0.95357 0.96919 0.97012 1.69971 1.36707 1.14455 1.32042 0.86606 0.78380 0.78123 0.84960 1.20624 1.21193 1.19982 1.21881 0.99357 0.96484 0.97599 1.21489 0.93524 0.97790 0.96931 1.22113 0.95835 1.00355 1.01009 1.22719 0.99964 0.91222 0.93131 1.67673 1.05837 1.25051 1.20317 1.22563 0.90670 0.96131 0.96097 0.93137 0.93863 0.90816 0.91488 0.93084 0.92733 0.92742 0.84520 0.92378 0.96757 0.95595 0.96830 0.92997 0.85117 0.85082 0.83101 0.82969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.90 37.16 0.33 -1.32 16 2 C -0.08 -0.94 2.66 -90.62 -0.24 -1.18 16 3 C -0.15 -1.48 8.91 37.16 0.33 -1.15 16 4 C 0.13 1.81 1.82 -68.86 -0.13 1.68 16 5 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 6 N -0.68 -11.39 5.33 -107.95 -0.57 -11.96 16 7 C 0.07 1.39 5.43 -3.83 -0.02 1.37 16 8 C 0.03 0.71 5.28 -27.88 -0.15 0.57 16 9 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 10 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 13 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.15 -2.01 3.85 -104.48 -0.40 -2.41 16 18 C -0.07 -0.84 8.93 -39.28 -0.35 -1.19 16 19 C -0.17 -1.89 10.11 -39.44 -0.40 -2.29 16 20 C 0.09 1.06 11.18 -17.55 -0.20 0.86 16 21 N -0.48 -7.13 10.36 -13.25 -0.14 -7.27 16 22 C 0.10 1.49 10.34 -17.55 -0.18 1.31 16 23 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 1.04 7.66 -51.93 -0.40 0.64 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.52 6.75 -51.93 -0.35 0.17 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.34 5.54 6.53 -39.30 -0.26 5.29 16 31 H 0.06 1.20 7.94 -51.93 -0.41 0.79 16 32 H 0.01 0.30 7.96 -51.93 -0.41 -0.11 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 38 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.15 2.11 6.49 -52.49 -0.34 1.77 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -30.99 320.04 -8.33 -39.32 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.34 Total: 1.93 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -1.81 Total: -17.37 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.02 Total: -45.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.99 -8.33 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309363944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.365 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds