Wall clock time and date at job start Mon Mar 30 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46720 * 2 1 4 4 C 1.52999 * 109.47187 * 120.00115 * 2 1 3 5 5 H 1.08999 * 109.47264 * 295.55436 * 4 2 1 6 6 N 1.46903 * 109.47236 * 55.56147 * 4 2 1 7 7 C 1.46897 * 110.99752 * 201.23394 * 6 4 2 8 8 C 1.53001 * 109.47025 * 174.79779 * 7 6 4 9 9 C 1.50699 * 109.47239 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99880 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00203 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99702 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00067 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46795 * 90.00026 * 13 11 9 15 15 H 1.48502 * 109.46871 * 209.99988 * 13 11 9 16 16 H 1.48503 * 109.46954 * 330.00087 * 13 11 9 17 17 C 1.50709 * 109.46500 * 175.55546 * 4 2 1 18 18 C 1.38670 * 120.41527 * 100.00788 * 17 4 2 19 19 C 1.38624 * 118.42010 * 180.02562 * 18 17 4 20 20 C 1.38231 * 119.15906 * 359.97438 * 19 18 17 21 21 N 1.31847 * 120.76422 * 359.97438 * 20 19 18 22 22 C 1.31887 * 121.72713 * 359.70747 * 21 20 19 23 23 H 1.09007 * 109.46830 * 294.96459 * 1 2 3 24 24 H 1.08998 * 109.47630 * 54.96221 * 1 2 3 25 25 H 1.09003 * 109.46968 * 174.97126 * 1 2 3 26 26 H 1.08996 * 109.46726 * 240.00380 * 2 1 3 27 27 H 1.09004 * 109.47054 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47224 * 300.00035 * 3 2 1 29 29 H 1.08996 * 109.47211 * 60.00677 * 3 2 1 30 30 H 1.00893 * 111.00181 * 77.27051 * 6 4 2 31 31 H 1.08995 * 109.47541 * 54.79313 * 7 6 4 32 32 H 1.09001 * 109.47023 * 294.79395 * 7 6 4 33 33 H 1.09001 * 109.46906 * 299.99687 * 8 7 6 34 34 H 1.08995 * 109.47341 * 59.99412 * 8 7 6 35 35 H 0.96999 * 119.99548 * 180.02562 * 12 11 9 36 36 H 1.08002 * 120.79366 * 359.97055 * 18 17 4 37 37 H 1.08007 * 120.42260 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.61616 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.61846 * 180.30679 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7432 -0.1635 2.1374 6 7 1.4648 -2.0719 1.3040 7 6 1.5015 -2.6045 2.6725 8 6 0.7798 -3.9530 2.7145 9 6 0.8179 -4.4997 4.1183 10 1 1.3082 -3.9414 4.9021 11 6 0.2269 -5.7126 4.4020 12 7 -0.3706 -6.3922 3.4476 13 14 0.2747 -6.3906 6.1420 14 1 -0.9165 -5.9162 6.8910 15 1 0.2713 -7.8749 6.0951 16 1 1.5075 -5.9197 6.8230 17 6 3.5431 -0.8172 1.1952 18 6 4.3295 0.0708 1.9134 19 6 5.7077 -0.0547 1.8334 20 6 6.2484 -1.0542 1.0463 21 7 5.4696 -1.8817 0.3777 22 6 4.1548 -1.7958 0.4352 23 1 -0.3633 0.4338 0.9317 24 1 -0.3634 0.5900 -0.8414 25 1 -0.3633 -1.0237 -0.0901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.9355 -2.6917 0.6619 31 1 1.0065 -1.9064 3.3475 32 1 2.5378 -2.7372 2.9831 33 1 -0.2565 -3.8202 2.4039 34 1 1.2748 -4.6511 2.0395 35 1 -0.7867 -7.2453 3.6474 36 1 3.8790 0.8425 2.5200 37 1 6.3510 0.6193 2.3797 38 1 7.3212 -1.1585 0.9783 39 1 3.5493 -2.4948 -0.1227 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309363944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:28 Heat of formation + Delta-G solvation = -4.926400 kcal Electronic energy + Delta-G solvation = -18003.224739 eV Core-core repulsion = 15330.019767 eV Total energy + Delta-G solvation = -2673.204972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.43037 -38.61720 -36.00789 -34.46360 -33.37238 -32.35071 -30.63409 -27.81761 -27.10701 -25.39138 -24.49183 -23.17105 -22.33116 -20.75637 -18.53936 -18.29190 -17.21982 -16.79186 -16.53578 -16.02780 -15.67805 -15.51861 -14.88681 -14.64318 -14.45279 -14.13594 -13.96575 -13.48474 -13.38579 -13.02022 -12.93099 -12.83026 -12.80151 -12.48622 -12.19010 -11.90587 -11.69117 -11.57708 -11.38594 -11.24606 -10.67775 -10.57308 -10.41588 -9.90086 -9.32547 -8.20884 -6.32305 0.15524 0.34253 1.38922 1.40641 1.51376 2.39455 2.84713 3.12575 3.23230 3.47451 3.75552 3.94420 4.01154 4.10422 4.16859 4.23991 4.41496 4.52602 4.58734 4.61707 4.70955 4.81662 4.86780 4.92352 5.06456 5.10291 5.14254 5.16238 5.25596 5.30964 5.42534 5.49887 5.63455 5.68307 5.76201 5.79674 6.13127 6.26595 6.47612 6.84881 7.01387 7.36879 8.91229 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020954 B = 0.005508 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.934757 B = 5082.016867 C = 5890.426136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.140 4.140 4 C 0.137 3.863 5 H 0.086 0.914 6 N -0.678 5.678 7 C 0.091 3.909 8 C 0.035 3.965 9 C -0.545 4.545 10 H 0.058 0.942 11 C 0.002 3.998 12 N -0.931 5.931 13 Si 0.965 3.035 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.265 1.265 17 C -0.157 4.157 18 C -0.075 4.075 19 C -0.163 4.163 20 C 0.076 3.924 21 N -0.511 5.511 22 C 0.080 3.920 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.336 0.664 31 H 0.060 0.940 32 H 0.007 0.993 33 H -0.003 1.003 34 H -0.013 1.013 35 H 0.264 0.736 36 H 0.154 0.846 37 H 0.168 0.832 38 H 0.178 0.822 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.506 17.358 -5.040 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C -0.198 4.198 4 C 0.026 3.974 5 H 0.104 0.896 6 N -0.308 5.308 7 C -0.038 4.038 8 C -0.003 4.003 9 C -0.583 4.583 10 H 0.076 0.924 11 C -0.196 4.196 12 N -0.571 5.571 13 Si 0.790 3.210 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.189 1.189 17 C -0.161 4.161 18 C -0.101 4.101 19 C -0.183 4.183 20 C -0.081 4.081 21 N -0.220 5.220 22 C -0.076 4.076 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.016 0.984 34 H 0.005 0.995 35 H 0.073 0.927 36 H 0.172 0.828 37 H 0.185 0.815 38 H 0.195 0.805 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.124 16.758 -5.543 19.870 hybrid contribution 0.372 -0.551 1.258 1.423 sum 9.496 16.207 -4.285 19.266 Atomic orbital electron populations 1.21627 0.94319 1.01718 1.01193 1.21023 0.96442 0.96108 0.95756 1.21801 1.00655 0.94645 1.02651 1.20725 0.85997 0.90732 0.99952 0.89557 1.60718 1.58967 1.03381 1.07746 1.21715 0.96740 0.96465 0.88866 1.18881 0.94723 0.91547 0.95141 1.21598 1.35772 1.05036 0.95909 0.92410 1.25955 0.94728 0.97244 1.01702 1.70108 1.37483 1.14947 1.34524 0.85449 0.78953 0.77358 0.79289 1.19522 1.20695 1.18927 1.21775 0.98934 0.97066 0.98289 1.21828 0.94081 0.97745 0.96454 1.22498 0.95851 0.99946 0.99982 1.23282 1.01117 0.90995 0.92685 1.67643 1.06084 1.26533 1.21715 1.22531 0.90982 0.96911 0.97207 0.93298 0.92061 0.93294 0.91977 0.93053 0.91552 0.91866 0.84492 0.92103 0.97450 0.98414 0.99487 0.92744 0.82830 0.81458 0.80483 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.90 71.98 0.64 -2.51 16 2 C -0.07 -1.69 2.66 -10.79 -0.03 -1.72 16 3 C -0.14 -2.49 8.91 71.98 0.64 -1.85 16 4 C 0.14 3.67 1.82 44.17 0.08 3.75 16 5 H 0.09 2.30 7.67 -2.39 -0.02 2.28 16 6 N -0.68 -23.46 5.33 -495.44 -2.64 -26.10 16 7 C 0.09 3.85 5.43 86.30 0.47 4.32 16 8 C 0.03 1.87 5.28 29.85 0.16 2.03 16 9 C -0.54 -31.63 9.11 25.60 0.23 -31.39 16 10 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 11 C 0.00 0.10 5.46 84.65 0.46 0.57 16 12 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 13 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 17 C -0.16 -4.08 3.85 -19.77 -0.08 -4.15 16 18 C -0.07 -1.58 8.93 22.47 0.20 -1.38 16 19 C -0.16 -3.06 10.11 22.36 0.23 -2.83 16 20 C 0.08 1.71 11.18 84.69 0.95 2.66 16 21 N -0.51 -15.00 10.36 -195.84 -2.03 -17.03 16 22 C 0.08 2.36 10.34 84.67 0.88 3.23 16 23 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.41 7.66 -2.39 -0.02 1.39 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 27 H 0.05 0.92 6.75 -2.38 -0.02 0.91 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.34 11.67 6.53 -89.70 -0.59 11.09 16 31 H 0.06 2.53 7.94 -2.39 -0.02 2.51 16 32 H 0.01 0.32 7.96 -2.39 -0.02 0.30 16 33 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 39 H 0.14 4.23 6.49 -2.91 -0.02 4.21 16 Total: -1.00 -67.80 320.04 2.90 -64.91 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.43 Total: 17.93 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 4.83 Total: -29.28 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -4.38 Total: -100.43 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -67.80 2.90 -64.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309363944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.979 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds