Wall clock time and date at job start Mon Mar 30 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47007 * 2 1 4 4 C 1.53000 * 109.47310 * 120.00419 * 2 1 3 5 5 H 1.08999 * 109.46829 * 295.20941 * 4 2 1 6 6 N 1.46895 * 109.47082 * 175.21452 * 4 2 1 7 7 C 1.46899 * 111.00148 * 154.61777 * 6 4 2 8 8 C 1.52997 * 109.47337 * 184.04127 * 7 6 4 9 9 C 1.50707 * 109.47120 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00064 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99922 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99939 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99890 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47160 * 60.00237 * 13 11 9 15 15 H 1.48507 * 109.46965 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47392 * 300.00205 * 13 11 9 17 17 C 1.50691 * 109.47040 * 55.20961 * 4 2 1 18 18 C 1.38678 * 120.42297 * 259.71967 * 17 4 2 19 19 C 1.38621 * 118.42448 * 180.27770 * 18 17 4 20 20 C 1.38229 * 119.15917 * 0.02562 * 19 18 17 21 21 N 1.31851 * 120.76549 * 359.97438 * 20 19 18 22 22 C 1.31889 * 121.72641 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46962 * 299.99521 * 1 2 3 24 24 H 1.09001 * 109.47113 * 59.99649 * 1 2 3 25 25 H 1.09004 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47004 * 240.00352 * 2 1 3 27 27 H 1.09000 * 109.46519 * 180.16932 * 3 2 1 28 28 H 1.08995 * 109.47271 * 300.16845 * 3 2 1 29 29 H 1.09002 * 109.47068 * 60.17282 * 3 2 1 30 30 H 1.00904 * 111.00393 * 30.66278 * 6 4 2 31 31 H 1.09004 * 109.46934 * 304.04317 * 7 6 4 32 32 H 1.08996 * 109.47032 * 64.03766 * 7 6 4 33 33 H 1.09004 * 109.47264 * 299.99988 * 8 7 6 34 34 H 1.08996 * 109.47354 * 59.99836 * 8 7 6 35 35 H 0.96999 * 120.00367 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.78518 * 0.28438 * 18 17 4 37 37 H 1.07996 * 120.42364 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.61644 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.61714 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7485 -0.1604 2.1371 6 7 3.5044 -0.8222 1.1927 7 6 4.0769 -0.9323 2.5411 8 6 5.6041 -0.9337 2.4483 9 6 6.1913 -1.0473 3.8315 10 1 5.5404 -1.1117 4.6909 11 6 7.5596 -1.0691 3.9999 12 7 8.3522 -0.9913 2.9534 13 14 8.2875 -1.2093 5.7145 14 1 7.8283 -2.4728 6.3455 15 1 9.7698 -1.2120 5.6242 16 1 7.8432 -0.0554 6.5368 17 6 1.4432 -2.1037 1.3098 18 6 0.3594 -2.3651 2.1345 19 6 -0.1530 -3.6528 2.1625 20 6 0.4295 -4.6268 1.3734 21 7 1.4595 -4.3421 0.6010 22 6 1.9723 -3.1282 0.5483 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0030 28 1 1.6742 1.9573 -0.8884 29 1 1.6792 1.9555 0.8915 30 1 3.9018 -0.0402 0.6940 31 1 3.7503 -0.0855 3.1448 32 1 3.7402 -1.8598 3.0041 33 1 5.9307 -1.7805 1.8446 34 1 5.9408 -0.0062 1.9853 35 1 9.3149 -1.0070 3.0717 36 1 -0.0752 -1.5839 2.7406 37 1 -0.9962 -3.8923 2.7934 38 1 0.0365 -5.6326 1.3898 39 1 2.8161 -2.9328 -0.0968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309363946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:31 Heat of formation + Delta-G solvation = 13.661473 kcal Electronic energy + Delta-G solvation = -17983.730225 eV Core-core repulsion = 15311.331284 eV Total energy + Delta-G solvation = -2672.398941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21659 -37.58276 -34.33210 -32.58514 -32.27127 -31.12851 -29.01721 -27.08612 -25.57759 -23.69034 -23.27389 -22.01549 -20.59842 -19.66471 -16.94827 -16.50557 -16.15708 -15.47654 -15.13710 -14.63315 -14.40795 -14.02483 -13.59097 -13.41587 -12.96518 -12.91698 -12.78415 -12.33373 -12.22257 -12.17657 -11.66874 -11.15383 -11.13563 -10.93879 -10.82316 -10.59454 -10.52839 -10.05822 -9.62140 -9.37597 -9.25829 -9.17558 -8.69866 -8.35366 -7.91853 -5.99772 -4.02359 1.31888 1.45219 3.33455 3.37868 3.40257 3.99903 4.38622 4.51980 4.63559 4.85679 4.92727 4.97559 5.02000 5.15329 5.27750 5.36221 5.39885 5.55043 5.57811 5.66934 5.70816 5.80745 5.90531 5.99999 6.04899 6.22395 6.23260 6.26562 6.33668 6.41028 6.50116 6.91268 6.96607 7.43761 7.70299 7.80901 7.92382 8.06679 8.20916 8.42924 9.04255 9.61381 11.11606 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.005432 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.108355 B = 5153.184235 C = 5936.305114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.151 4.151 4 C 0.131 3.869 5 H 0.050 0.950 6 N -0.686 5.686 7 C 0.069 3.931 8 C 0.025 3.975 9 C -0.522 4.522 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.111 4.111 18 C -0.077 4.077 19 C -0.180 4.180 20 C 0.086 3.914 21 N -0.489 5.489 22 C 0.131 3.869 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.342 0.658 31 H 0.016 0.984 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.823 0.768 -5.103 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.209 4.209 4 C 0.020 3.980 5 H 0.068 0.932 6 N -0.319 5.319 7 C -0.059 4.059 8 C -0.012 4.012 9 C -0.561 4.561 10 H 0.071 0.929 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.200 4.200 20 C -0.071 4.071 21 N -0.198 5.198 22 C -0.026 4.026 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.245 -0.563 -5.774 18.194 hybrid contribution -0.007 1.454 1.984 2.460 sum -17.251 0.890 -3.790 17.685 Atomic orbital electron populations 1.21835 0.95072 1.01807 1.01506 1.21259 0.95814 0.96026 0.98181 1.21904 1.01623 0.95583 1.01782 1.20403 0.89720 0.90742 0.97108 0.93213 1.60592 1.02051 1.49257 1.19997 1.22181 0.98711 0.98745 0.86311 1.19071 0.87404 0.97614 0.97103 1.21118 0.91513 1.50708 0.92772 0.92910 1.24986 0.97261 0.95266 0.96736 1.69954 1.03716 1.50400 1.29130 0.86659 0.77952 0.78639 0.84744 1.20235 1.21222 1.20305 1.20855 0.95794 0.97492 0.97201 1.21439 0.95269 0.96760 0.96912 1.22009 1.02095 0.94216 1.01670 1.22692 0.92463 0.99310 0.92642 1.67757 1.10341 1.21824 1.19865 1.22732 0.97056 0.86771 0.96046 0.92835 0.92706 0.92572 0.90148 0.91972 0.92381 0.92747 0.83736 0.96574 0.92585 0.95613 0.96820 0.92918 0.85548 0.85370 0.83407 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.67 37.16 0.32 -1.11 16 2 C -0.09 -1.07 2.62 -90.62 -0.24 -1.31 16 3 C -0.15 -1.61 9.02 37.16 0.34 -1.27 16 4 C 0.13 1.82 1.86 -68.87 -0.13 1.69 16 5 H 0.05 0.71 7.62 -51.93 -0.40 0.32 16 6 N -0.69 -11.63 5.61 -107.96 -0.61 -12.23 16 7 C 0.07 1.43 5.46 -3.83 -0.02 1.41 16 8 C 0.03 0.66 5.19 -27.88 -0.14 0.52 16 9 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 10 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 C -0.11 -1.57 3.68 -104.48 -0.38 -1.96 16 18 C -0.08 -0.97 8.90 -39.28 -0.35 -1.32 16 19 C -0.18 -2.09 10.11 -39.44 -0.40 -2.48 16 20 C 0.09 1.11 11.18 -17.55 -0.20 0.91 16 21 N -0.49 -7.70 10.36 -13.25 -0.14 -7.84 16 22 C 0.13 2.05 10.49 -17.55 -0.18 1.87 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.59 6.59 -51.93 -0.34 0.25 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.71 6.42 -51.93 -0.33 0.38 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.34 5.56 6.40 -39.29 -0.25 5.31 16 31 H 0.02 0.33 7.96 -51.93 -0.41 -0.08 16 32 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.16 2.60 7.73 -52.49 -0.41 2.19 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -30.90 319.88 -8.33 -39.23 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.33 Total: 2.12 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -1.80 Total: -16.67 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.01 Total: -46.33 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.90 -8.33 -39.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309363946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.893 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds