Wall clock time and date at job start Mon Mar 30 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47007 * 2 1 4 4 C 1.53000 * 109.47310 * 120.00419 * 2 1 3 5 5 H 1.08999 * 109.46829 * 295.20941 * 4 2 1 6 6 N 1.46895 * 109.47082 * 175.21452 * 4 2 1 7 7 C 1.46899 * 111.00148 * 154.61777 * 6 4 2 8 8 C 1.52997 * 109.47337 * 184.04127 * 7 6 4 9 9 C 1.50707 * 109.47120 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00064 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99922 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99939 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99890 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47160 * 60.00237 * 13 11 9 15 15 H 1.48507 * 109.46965 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47392 * 300.00205 * 13 11 9 17 17 C 1.50691 * 109.47040 * 55.20961 * 4 2 1 18 18 C 1.38678 * 120.42297 * 259.71967 * 17 4 2 19 19 C 1.38621 * 118.42448 * 180.27770 * 18 17 4 20 20 C 1.38229 * 119.15917 * 0.02562 * 19 18 17 21 21 N 1.31851 * 120.76549 * 359.97438 * 20 19 18 22 22 C 1.31889 * 121.72641 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46962 * 299.99521 * 1 2 3 24 24 H 1.09001 * 109.47113 * 59.99649 * 1 2 3 25 25 H 1.09004 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47004 * 240.00352 * 2 1 3 27 27 H 1.09000 * 109.46519 * 180.16932 * 3 2 1 28 28 H 1.08995 * 109.47271 * 300.16845 * 3 2 1 29 29 H 1.09002 * 109.47068 * 60.17282 * 3 2 1 30 30 H 1.00904 * 111.00393 * 30.66278 * 6 4 2 31 31 H 1.09004 * 109.46934 * 304.04317 * 7 6 4 32 32 H 1.08996 * 109.47032 * 64.03766 * 7 6 4 33 33 H 1.09004 * 109.47264 * 299.99988 * 8 7 6 34 34 H 1.08996 * 109.47354 * 59.99836 * 8 7 6 35 35 H 0.96999 * 120.00367 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.78518 * 0.28438 * 18 17 4 37 37 H 1.07996 * 120.42364 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.61644 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.61714 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7485 -0.1604 2.1371 6 7 3.5044 -0.8222 1.1927 7 6 4.0769 -0.9323 2.5411 8 6 5.6041 -0.9337 2.4483 9 6 6.1913 -1.0473 3.8315 10 1 5.5404 -1.1117 4.6909 11 6 7.5596 -1.0691 3.9999 12 7 8.3522 -0.9913 2.9534 13 14 8.2875 -1.2093 5.7145 14 1 7.8283 -2.4728 6.3455 15 1 9.7698 -1.2120 5.6242 16 1 7.8432 -0.0554 6.5368 17 6 1.4432 -2.1037 1.3098 18 6 0.3594 -2.3651 2.1345 19 6 -0.1530 -3.6528 2.1625 20 6 0.4295 -4.6268 1.3734 21 7 1.4595 -4.3421 0.6010 22 6 1.9723 -3.1282 0.5483 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0030 28 1 1.6742 1.9573 -0.8884 29 1 1.6792 1.9555 0.8915 30 1 3.9018 -0.0402 0.6940 31 1 3.7503 -0.0855 3.1448 32 1 3.7402 -1.8598 3.0041 33 1 5.9307 -1.7805 1.8446 34 1 5.9408 -0.0062 1.9853 35 1 9.3149 -1.0070 3.0717 36 1 -0.0752 -1.5839 2.7406 37 1 -0.9962 -3.8923 2.7934 38 1 0.0365 -5.6326 1.3898 39 1 2.8161 -2.9328 -0.0968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309363946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:30 Heat of formation + Delta-G solvation = -5.385419 kcal Electronic energy + Delta-G solvation = -17984.556160 eV Core-core repulsion = 15311.331284 eV Total energy + Delta-G solvation = -2673.224876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27273 -38.74248 -36.01259 -34.38272 -33.32283 -32.27057 -30.75688 -27.94475 -27.10019 -25.27340 -24.39569 -23.17742 -22.30467 -20.73819 -18.54354 -17.95378 -17.44691 -16.72244 -16.49657 -16.08908 -15.78371 -15.34771 -14.88085 -14.56374 -14.30502 -14.08819 -13.91520 -13.83742 -13.48548 -13.11629 -12.99004 -12.84801 -12.77466 -12.44586 -12.08985 -12.04139 -11.72407 -11.55776 -11.39990 -11.25402 -10.60305 -10.57652 -10.33844 -9.76410 -9.33283 -8.21470 -6.33047 0.29059 0.43611 1.38674 1.41969 1.49904 2.39199 2.94532 3.11904 3.24366 3.60217 3.86424 3.95846 4.02084 4.10266 4.21383 4.26843 4.40150 4.50584 4.52909 4.61959 4.75961 4.77465 4.83359 4.96867 4.97905 5.03097 5.04275 5.21491 5.25990 5.37029 5.37562 5.41464 5.47379 5.66522 5.78132 5.88879 6.13718 6.26529 6.54179 6.83590 7.15289 7.36114 8.90374 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.005432 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.108355 B = 5153.184235 C = 5936.305114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 C -0.150 4.150 4 C 0.135 3.865 5 H 0.053 0.947 6 N -0.690 5.690 7 C 0.092 3.908 8 C 0.033 3.967 9 C -0.546 4.546 10 H 0.058 0.942 11 C 0.003 3.997 12 N -0.930 5.930 13 Si 0.965 3.035 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.265 1.265 17 C -0.119 4.119 18 C -0.080 4.080 19 C -0.169 4.169 20 C 0.075 3.925 21 N -0.520 5.520 22 C 0.106 3.894 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.345 0.655 31 H 0.021 0.979 32 H 0.044 0.956 33 H -0.008 1.008 34 H -0.005 1.005 35 H 0.264 0.736 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.868 1.094 -3.596 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.207 4.207 4 C 0.025 3.975 5 H 0.071 0.929 6 N -0.323 5.323 7 C -0.036 4.036 8 C -0.005 4.005 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.789 3.211 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.189 1.189 17 C -0.122 4.122 18 C -0.107 4.107 19 C -0.188 4.188 20 C -0.082 4.082 21 N -0.229 5.229 22 C -0.050 4.050 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.166 0.834 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.010 0.990 34 H 0.013 0.987 35 H 0.073 0.927 36 H 0.168 0.832 37 H 0.183 0.817 38 H 0.193 0.807 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.307 -0.228 -4.278 19.777 hybrid contribution 0.575 1.309 1.469 2.050 sum -18.733 1.081 -2.809 18.973 Atomic orbital electron populations 1.21773 0.93344 1.01698 1.02697 1.21215 0.97127 0.95976 0.96406 1.21893 1.00743 0.95207 1.02853 1.20471 0.87267 0.91278 0.98534 0.92892 1.60457 1.04380 1.49825 1.17649 1.21707 0.95266 0.98262 0.88407 1.18909 0.90976 0.95057 0.95517 1.21560 0.92244 1.50821 0.93862 0.92421 1.25949 0.97748 0.94607 1.01253 1.70091 1.04102 1.51142 1.31662 0.85506 0.77117 0.79146 0.79304 1.19445 1.20657 1.18939 1.20873 0.96677 0.96990 0.97677 1.21774 0.94542 0.97998 0.96351 1.22406 1.02302 0.93263 1.00828 1.23245 0.91721 1.01075 0.92165 1.67694 1.11851 1.21970 1.21383 1.22551 0.97558 0.87706 0.97214 0.91830 0.91323 0.93279 0.91044 0.93345 0.90654 0.92316 0.83365 0.96051 0.93773 0.99002 0.98662 0.92705 0.83165 0.81653 0.80722 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.67 71.98 0.62 -1.79 16 2 C -0.09 -1.93 2.62 -10.79 -0.03 -1.95 16 3 C -0.15 -2.99 9.02 71.98 0.65 -2.34 16 4 C 0.13 3.67 1.86 44.17 0.08 3.76 16 5 H 0.05 1.43 7.62 -2.39 -0.02 1.41 16 6 N -0.69 -23.99 5.61 -495.49 -2.78 -26.77 16 7 C 0.09 3.94 5.46 86.30 0.47 4.41 16 8 C 0.03 1.77 5.19 29.85 0.15 1.93 16 9 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 10 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 11 C 0.00 0.15 5.46 84.66 0.46 0.62 16 12 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 13 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 17 C -0.12 -3.33 3.68 -19.78 -0.07 -3.40 16 18 C -0.08 -1.82 8.90 22.47 0.20 -1.62 16 19 C -0.17 -3.41 10.11 22.36 0.23 -3.18 16 20 C 0.07 1.81 11.18 84.69 0.95 2.75 16 21 N -0.52 -16.44 10.36 -195.84 -2.03 -18.47 16 22 C 0.11 3.41 10.49 84.67 0.89 4.30 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 0.94 6.59 -2.38 -0.02 0.92 16 26 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.05 1.10 6.42 -2.39 -0.02 1.08 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.35 11.60 6.40 -89.69 -0.57 11.02 16 31 H 0.02 0.88 7.96 -2.38 -0.02 0.86 16 32 H 0.04 1.98 8.08 -2.39 -0.02 1.96 16 33 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 34 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.14 4.94 7.73 -2.91 -0.02 4.92 16 Total: -1.00 -67.89 319.88 2.78 -65.11 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.44 Total: 18.42 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.84 Total: -28.00 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -4.52 Total: -102.33 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -67.89 2.78 -65.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309363946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.723 kcal (2) G-P(sol) polarization free energy of solvation -67.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds