Wall clock time and date at job start Mon Mar 30 2020 05:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47230 * 2 1 4 4 C 1.38228 * 120.41793 * 94.19995 * 3 2 1 5 5 N 1.31855 * 120.76428 * 180.26470 * 4 3 2 6 6 C 1.31882 * 121.72427 * 359.74880 * 5 4 3 7 7 C 1.38182 * 120.76546 * 359.97438 * 6 5 4 8 8 C 1.38628 * 120.42466 * 273.93571 * 3 2 1 9 9 C 1.50706 * 120.78484 * 0.02562 * 8 3 2 10 10 H 1.08997 * 109.47215 * 33.04739 * 9 8 3 11 11 C 1.53000 * 109.46843 * 273.04524 * 9 8 3 12 12 N 1.46900 * 109.46920 * 153.05182 * 9 8 3 13 13 C 1.46905 * 110.99921 * 220.75756 * 12 9 8 14 14 H 1.08997 * 109.46995 * 33.55128 * 13 12 9 15 15 C 1.52997 * 109.47021 * 273.55457 * 13 12 9 16 16 C 1.50700 * 109.47260 * 153.54989 * 13 12 9 17 17 H 1.08002 * 119.99620 * 5.32080 * 16 13 12 18 18 C 1.37876 * 120.00038 * 185.32027 * 16 13 12 19 19 N 1.31513 * 119.99594 * 9.76841 * 18 16 13 20 20 Si 1.86798 * 119.99990 * 189.77377 * 18 16 13 21 21 H 1.48498 * 109.47066 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46991 * 299.99792 * 20 18 16 23 23 H 1.48498 * 109.47249 * 60.00165 * 20 18 16 24 24 H 1.09003 * 109.47147 * 64.78667 * 1 2 3 25 25 H 1.09005 * 109.47013 * 184.78328 * 1 2 3 26 26 H 1.08999 * 109.47375 * 304.78797 * 1 2 3 27 27 H 1.09001 * 109.47143 * 240.00657 * 2 1 3 28 28 H 1.09003 * 109.47397 * 120.00187 * 2 1 3 29 29 H 1.08009 * 119.61755 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.61870 * 179.97438 * 6 5 4 31 31 H 1.08003 * 120.41962 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.46880 * 63.81528 * 11 9 8 33 33 H 1.09002 * 109.46863 * 183.81626 * 11 9 8 34 34 H 1.08996 * 109.47302 * 303.81509 * 11 9 8 35 35 H 1.00903 * 111.00136 * 344.70407 * 12 9 8 36 36 H 1.09003 * 109.46955 * 300.91151 * 15 13 12 37 37 H 1.08991 * 109.47580 * 60.90849 * 15 13 12 38 38 H 1.08994 * 109.47088 * 180.91523 * 15 13 12 39 39 H 0.97001 * 120.00608 * 356.93856 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3479 2.0515 1.1888 5 7 2.7831 3.2962 1.1972 6 6 2.9389 3.9838 0.0826 7 6 2.6489 3.4173 -1.1439 8 6 2.1890 2.1100 -1.1926 9 6 1.8610 1.4561 -2.5102 10 1 1.0299 0.7639 -2.3754 11 6 3.0847 0.6912 -3.0184 12 7 1.4867 2.4863 -3.4882 13 6 0.3497 2.0459 -4.3077 14 1 -0.3115 1.4221 -3.7062 15 6 0.8639 1.2400 -5.5023 16 6 -0.4089 3.2501 -4.8030 17 1 -0.0319 4.2433 -4.6085 18 6 -1.5842 3.0839 -5.5045 19 7 -2.1442 1.8962 -5.5771 20 14 -2.3809 4.5457 -6.3517 21 1 -3.6250 4.1055 -7.0326 22 1 -2.7094 5.5842 -5.3424 23 1 -1.4415 5.1092 -7.3542 24 1 -0.3633 0.4378 -0.9298 25 1 -0.3633 -1.0241 0.0857 26 1 -0.3634 0.5863 0.8440 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.2331 1.5199 2.1220 30 1 3.2973 5.0016 0.1291 31 1 2.7790 3.9854 -2.0532 32 1 3.3216 -0.1166 -2.3259 33 1 2.8699 0.2748 -4.0026 34 1 3.9344 1.3703 -3.0887 35 1 1.2846 3.3628 -3.0309 36 1 1.5379 1.8587 -6.0948 37 1 1.3987 0.3604 -5.1441 38 1 0.0215 0.9271 -6.1190 39 1 -1.7079 1.1288 -5.1751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309636398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:55 Heat of formation + Delta-G solvation = 16.356887 kcal Electronic energy + Delta-G solvation = -18497.376586 eV Core-core repulsion = 15825.094527 eV Total energy + Delta-G solvation = -2672.282059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41294 -36.96181 -34.81546 -33.56173 -31.36717 -29.89863 -29.26036 -27.69127 -24.76916 -24.25771 -23.90285 -21.45837 -20.58315 -20.00780 -17.46068 -16.52408 -16.14919 -15.25591 -14.42003 -14.28715 -14.11668 -13.93962 -13.75320 -13.52383 -13.37022 -12.54961 -12.30912 -12.24270 -12.05512 -11.88454 -11.46209 -11.24977 -11.16485 -10.97956 -10.78177 -10.60585 -10.34232 -10.23747 -10.12229 -9.29767 -9.24406 -8.81354 -8.62882 -8.28967 -7.56230 -6.42441 -4.13512 1.24280 1.41266 3.40339 3.43134 3.61038 3.91176 4.46598 4.53594 4.70350 4.85550 4.90404 4.94335 5.21738 5.31581 5.36728 5.44138 5.44628 5.61131 5.76231 5.81390 5.87936 5.93037 5.95125 6.09556 6.17377 6.27093 6.34199 6.44207 6.56749 6.58088 6.80650 6.86148 6.89186 7.07985 7.53955 7.78657 8.02518 8.08071 8.43058 8.51022 8.80828 9.58264 10.95352 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.006202 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.685687 B = 4513.590391 C = 4763.465514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.132 4.132 4 C 0.094 3.906 5 N -0.492 5.492 6 C 0.089 3.911 7 C -0.159 4.159 8 C -0.035 4.035 9 C 0.115 3.885 10 H 0.062 0.938 11 C -0.132 4.132 12 N -0.676 5.676 13 C 0.201 3.799 14 H -0.005 1.005 15 C -0.130 4.130 16 C -0.605 4.605 17 H 0.053 0.947 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 1.067 2.933 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.287 1.287 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.337 0.663 36 H 0.043 0.957 37 H 0.018 0.982 38 H 0.052 0.948 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.373 -2.452 9.943 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.134 4.134 4 C -0.063 4.063 5 N -0.200 5.200 6 C -0.067 4.067 7 C -0.179 4.179 8 C -0.043 4.043 9 C 0.005 3.995 10 H 0.080 0.920 11 C -0.190 4.190 12 N -0.309 5.309 13 C 0.093 3.907 14 H 0.012 0.988 15 C -0.188 4.188 16 C -0.643 4.643 17 H 0.072 0.928 18 C -0.181 4.181 19 N -0.544 5.544 20 Si 0.895 3.105 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.213 1.213 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.167 0.833 30 H 0.170 0.830 31 H 0.161 0.839 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.704 -1.781 9.373 12.263 hybrid contribution 0.446 -0.703 0.684 1.078 sum 8.151 -2.484 10.057 13.181 Atomic orbital electron populations 1.21770 0.94386 1.01846 1.02662 1.20507 0.96467 0.92011 1.03003 1.20774 1.01073 0.97889 0.93671 1.22540 0.95707 0.90991 0.97042 1.67618 1.13130 1.07844 1.31430 1.22683 0.96682 0.99598 0.87761 1.22111 1.00151 0.95719 0.99947 1.20659 0.94286 0.93914 0.95477 1.20668 0.97770 0.94325 0.86756 0.92000 1.21853 0.97269 0.98796 1.01093 1.60853 1.42784 1.04184 1.23085 1.19313 0.85755 0.95274 0.90335 0.98766 1.21869 0.99755 0.97374 0.99823 1.22033 1.09881 0.92597 1.39837 0.92830 1.25750 0.94520 1.02275 0.95555 1.70810 1.39100 1.00328 1.44132 0.83565 0.76173 0.74281 0.76436 1.20794 1.21536 1.21298 0.92085 0.92173 0.92639 0.90487 0.90963 0.83317 0.82992 0.83867 0.93546 0.91448 0.92567 0.84288 0.93737 0.96349 0.92920 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.78 37.15 0.36 -1.52 16 2 C -0.08 -0.98 5.41 -27.88 -0.15 -1.13 16 3 C -0.13 -1.85 5.15 -104.48 -0.54 -2.39 16 4 C 0.09 1.29 10.85 -17.55 -0.19 1.10 16 5 N -0.49 -7.33 10.36 -13.25 -0.14 -7.46 16 6 C 0.09 1.25 11.18 -17.55 -0.20 1.06 16 7 C -0.16 -2.40 8.87 -39.44 -0.35 -2.75 16 8 C -0.03 -0.55 4.97 -104.32 -0.52 -1.07 16 9 C 0.12 1.99 2.20 -68.86 -0.15 1.84 16 10 H 0.06 1.15 4.84 -51.93 -0.25 0.89 16 11 C -0.13 -2.04 9.35 37.16 0.35 -1.69 16 12 N -0.68 -13.86 5.84 -102.17 -0.60 -14.46 16 13 C 0.20 4.91 2.20 -68.86 -0.15 4.75 16 14 H -0.01 -0.14 6.66 -51.93 -0.35 -0.48 16 15 C -0.13 -3.03 8.96 37.16 0.33 -2.70 16 16 C -0.61 -16.52 8.48 -34.44 -0.29 -16.81 16 17 H 0.05 1.46 7.67 -52.49 -0.40 1.06 16 18 C 0.02 0.67 5.19 -17.82 -0.09 0.58 16 19 N -0.91 -26.66 13.06 55.43 0.72 -25.94 16 20 Si 1.07 24.81 29.92 -169.99 -5.09 19.72 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.06 0.93 6.94 -51.93 -0.36 0.57 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.94 5.91 -51.93 -0.31 0.63 16 28 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 29 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.14 2.11 6.86 -52.48 -0.36 1.75 16 32 H 0.05 0.61 7.03 -51.93 -0.37 0.25 16 33 H 0.07 1.10 6.05 -51.93 -0.31 0.79 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.34 6.97 5.97 -39.29 -0.23 6.74 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.37 6.18 -51.93 -0.32 0.05 16 38 H 0.05 1.32 6.41 -51.93 -0.33 0.99 16 39 H 0.27 7.89 6.03 -40.82 -0.25 7.64 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -29.68 306.40 -7.66 -37.33 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.59 Total: 6.92 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -1.59 Total: -20.73 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.01 Total: -47.86 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.09 Total: 19.72 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.68 -7.66 -37.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309636398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.691 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds