Wall clock time and date at job start Mon Mar 30 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47230 * 2 1 4 4 C 1.38228 * 120.41793 * 94.19995 * 3 2 1 5 5 N 1.31855 * 120.76428 * 180.26470 * 4 3 2 6 6 C 1.31882 * 121.72427 * 359.74880 * 5 4 3 7 7 C 1.38182 * 120.76546 * 359.97438 * 6 5 4 8 8 C 1.38628 * 120.42466 * 273.93571 * 3 2 1 9 9 C 1.50706 * 120.78484 * 0.02562 * 8 3 2 10 10 H 1.08997 * 109.47215 * 33.04739 * 9 8 3 11 11 C 1.53000 * 109.46843 * 273.04524 * 9 8 3 12 12 N 1.46900 * 109.46920 * 153.05182 * 9 8 3 13 13 C 1.46905 * 110.99921 * 220.75756 * 12 9 8 14 14 H 1.08997 * 109.46995 * 33.55128 * 13 12 9 15 15 C 1.52997 * 109.47021 * 273.55457 * 13 12 9 16 16 C 1.50700 * 109.47260 * 153.54989 * 13 12 9 17 17 H 1.08002 * 119.99620 * 5.32080 * 16 13 12 18 18 C 1.37876 * 120.00038 * 185.32027 * 16 13 12 19 19 N 1.31513 * 119.99594 * 9.76841 * 18 16 13 20 20 Si 1.86798 * 119.99990 * 189.77377 * 18 16 13 21 21 H 1.48498 * 109.47066 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46991 * 299.99792 * 20 18 16 23 23 H 1.48498 * 109.47249 * 60.00165 * 20 18 16 24 24 H 1.09003 * 109.47147 * 64.78667 * 1 2 3 25 25 H 1.09005 * 109.47013 * 184.78328 * 1 2 3 26 26 H 1.08999 * 109.47375 * 304.78797 * 1 2 3 27 27 H 1.09001 * 109.47143 * 240.00657 * 2 1 3 28 28 H 1.09003 * 109.47397 * 120.00187 * 2 1 3 29 29 H 1.08009 * 119.61755 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.61870 * 179.97438 * 6 5 4 31 31 H 1.08003 * 120.41962 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.46880 * 63.81528 * 11 9 8 33 33 H 1.09002 * 109.46863 * 183.81626 * 11 9 8 34 34 H 1.08996 * 109.47302 * 303.81509 * 11 9 8 35 35 H 1.00903 * 111.00136 * 344.70407 * 12 9 8 36 36 H 1.09003 * 109.46955 * 300.91151 * 15 13 12 37 37 H 1.08991 * 109.47580 * 60.90849 * 15 13 12 38 38 H 1.08994 * 109.47088 * 180.91523 * 15 13 12 39 39 H 0.97001 * 120.00608 * 356.93856 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3479 2.0515 1.1888 5 7 2.7831 3.2962 1.1972 6 6 2.9389 3.9838 0.0826 7 6 2.6489 3.4173 -1.1439 8 6 2.1890 2.1100 -1.1926 9 6 1.8610 1.4561 -2.5102 10 1 1.0299 0.7639 -2.3754 11 6 3.0847 0.6912 -3.0184 12 7 1.4867 2.4863 -3.4882 13 6 0.3497 2.0459 -4.3077 14 1 -0.3115 1.4221 -3.7062 15 6 0.8639 1.2400 -5.5023 16 6 -0.4089 3.2501 -4.8030 17 1 -0.0319 4.2433 -4.6085 18 6 -1.5842 3.0839 -5.5045 19 7 -2.1442 1.8962 -5.5771 20 14 -2.3809 4.5457 -6.3517 21 1 -3.6250 4.1055 -7.0326 22 1 -2.7094 5.5842 -5.3424 23 1 -1.4415 5.1092 -7.3542 24 1 -0.3633 0.4378 -0.9298 25 1 -0.3633 -1.0241 0.0857 26 1 -0.3634 0.5863 0.8440 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.2331 1.5199 2.1220 30 1 3.2973 5.0016 0.1291 31 1 2.7790 3.9854 -2.0532 32 1 3.3216 -0.1166 -2.3259 33 1 2.8699 0.2748 -4.0026 34 1 3.9344 1.3703 -3.0887 35 1 1.2846 3.3628 -3.0309 36 1 1.5379 1.8587 -6.0948 37 1 1.3987 0.3604 -5.1441 38 1 0.0215 0.9271 -6.1190 39 1 -1.7079 1.1288 -5.1751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309636398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:54 Heat of formation + Delta-G solvation = -1.607555 kcal Electronic energy + Delta-G solvation = -18498.155582 eV Core-core repulsion = 15825.094527 eV Total energy + Delta-G solvation = -2673.061056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55571 -38.52950 -36.19322 -35.09176 -32.95645 -31.20720 -30.45058 -29.40233 -26.83678 -25.42802 -25.04864 -22.83420 -22.02839 -21.51938 -19.27056 -17.72764 -17.60754 -16.39859 -15.89054 -15.79590 -15.72881 -15.48137 -15.11986 -14.66519 -14.56423 -14.01266 -13.90903 -13.50491 -13.43630 -13.16599 -13.05606 -12.94056 -12.62394 -12.44623 -12.24545 -12.15707 -11.97432 -11.94993 -11.78183 -10.70344 -10.51336 -10.41305 -10.30966 -9.88541 -9.28049 -8.64298 -6.36066 0.15640 0.25008 1.52452 1.59732 1.78894 2.54442 2.80690 3.16211 3.33096 3.49856 3.59349 3.81380 3.91910 4.03596 4.25013 4.34615 4.36441 4.44325 4.50494 4.60767 4.67344 4.74246 4.74660 4.88948 4.90509 4.92665 4.96580 4.96947 5.09805 5.20679 5.25973 5.34746 5.43160 5.58617 5.76472 5.84107 6.03428 6.44179 6.54321 6.74510 6.98875 7.44338 8.73767 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.006202 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.685687 B = 4513.590391 C = 4763.465514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.134 4.134 4 C 0.094 3.906 5 N -0.505 5.505 6 C 0.088 3.912 7 C -0.170 4.170 8 C -0.053 4.053 9 C 0.118 3.882 10 H 0.047 0.953 11 C -0.126 4.126 12 N -0.672 5.672 13 C 0.206 3.794 14 H -0.035 1.035 15 C -0.117 4.117 16 C -0.618 4.618 17 H 0.050 0.950 18 C -0.024 4.024 19 N -0.931 5.931 20 Si 1.112 2.888 21 H -0.285 1.285 22 H -0.273 1.273 23 H -0.271 1.271 24 H 0.023 0.977 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.180 0.820 30 H 0.178 0.822 31 H 0.141 0.859 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.334 0.666 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.346 -2.241 11.180 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.136 4.136 4 C -0.063 4.063 5 N -0.214 5.214 6 C -0.068 4.068 7 C -0.190 4.190 8 C -0.061 4.061 9 C 0.008 3.992 10 H 0.065 0.935 11 C -0.183 4.183 12 N -0.304 5.304 13 C 0.097 3.903 14 H -0.017 1.017 15 C -0.175 4.175 16 C -0.656 4.656 17 H 0.068 0.932 18 C -0.223 4.223 19 N -0.568 5.568 20 Si 0.934 3.066 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.196 1.196 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.196 0.804 30 H 0.195 0.805 31 H 0.158 0.842 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.154 0.846 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.707 -1.576 10.625 13.827 hybrid contribution 0.181 -0.793 0.386 0.900 sum 8.888 -2.369 11.011 14.348 Atomic orbital electron populations 1.21736 0.95087 1.02713 1.00789 1.20557 0.95682 0.91042 1.04410 1.20985 1.00621 0.98823 0.93170 1.23030 0.94531 0.90728 0.97982 1.67698 1.13556 1.08513 1.31651 1.23053 0.96013 1.00608 0.87107 1.22164 1.00776 0.95618 1.00465 1.20612 0.95723 0.94574 0.95239 1.20633 0.97959 0.93354 0.87235 0.93473 1.21790 0.96274 0.99267 1.01013 1.60818 1.40495 1.04945 1.24158 1.19129 0.86369 0.94016 0.90793 1.01723 1.21692 0.98835 0.98108 0.98912 1.22398 1.10255 0.93394 1.39538 0.93171 1.27109 0.95462 1.03833 0.95891 1.70919 1.39682 1.00784 1.45445 0.82991 0.75552 0.71872 0.76186 1.21030 1.19880 1.19632 0.95760 0.90355 0.92219 0.90822 0.87761 0.80353 0.80528 0.84162 0.91079 0.92552 0.92317 0.84627 0.93962 0.93947 0.95246 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.78 71.98 0.70 -2.83 16 2 C -0.08 -1.73 5.41 29.85 0.16 -1.57 16 3 C -0.13 -3.52 5.15 -19.77 -0.10 -3.63 16 4 C 0.09 2.33 10.85 84.69 0.92 3.25 16 5 N -0.51 -13.95 10.36 -195.83 -2.03 -15.98 16 6 C 0.09 2.33 11.18 84.67 0.95 3.28 16 7 C -0.17 -4.99 8.87 22.36 0.20 -4.79 16 8 C -0.05 -1.63 4.97 -19.67 -0.10 -1.72 16 9 C 0.12 4.07 2.20 44.17 0.10 4.16 16 10 H 0.05 1.79 4.84 -2.39 -0.01 1.78 16 11 C -0.13 -3.74 9.35 71.98 0.67 -3.06 16 12 N -0.67 -27.86 5.84 -477.15 -2.79 -30.65 16 13 C 0.21 10.28 2.20 44.17 0.10 10.37 16 14 H -0.03 -1.91 6.66 -2.39 -0.02 -1.93 16 15 C -0.12 -5.54 8.96 71.98 0.64 -4.90 16 16 C -0.62 -34.22 8.48 25.60 0.22 -34.00 16 17 H 0.05 2.75 7.67 -2.91 -0.02 2.73 16 18 C -0.02 -1.33 5.19 84.65 0.44 -0.89 16 19 N -0.93 -55.91 13.06 21.45 0.28 -55.63 16 20 Si 1.11 49.82 29.92 68.60 2.05 51.87 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H 0.02 0.75 6.94 -2.39 -0.02 0.73 16 25 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.66 5.91 -2.39 -0.01 1.65 16 28 H 0.10 1.63 8.07 -2.39 -0.02 1.61 16 29 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.14 4.10 6.86 -2.91 -0.02 4.08 16 32 H 0.07 1.75 7.03 -2.39 -0.02 1.74 16 33 H 0.06 1.78 6.05 -2.39 -0.01 1.77 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.33 14.04 5.97 -89.69 -0.54 13.51 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.75 6.18 -2.39 -0.01 1.74 16 38 H 0.03 1.50 6.41 -2.39 -0.02 1.48 16 39 H 0.26 15.71 6.03 -92.71 -0.56 15.15 16 Total: -1.00 -64.03 306.40 3.14 -60.89 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.72 Total: 25.82 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 4.90 Total: -36.33 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -4.54 Total: -102.26 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.05 Total: 51.87 kcal Total: -64.03 3.14 -60.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309636398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.286 kcal (2) G-P(sol) polarization free energy of solvation -64.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds