Wall clock time and date at job start Mon Mar 30 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46751 * 2 1 4 4 C 1.38219 * 120.42211 * 265.02416 * 3 2 1 5 5 N 1.31856 * 120.76727 * 179.97438 * 4 3 2 6 6 C 1.31881 * 121.72135 * 359.70036 * 5 4 3 7 7 C 1.38187 * 120.76512 * 0.58946 * 6 5 4 8 8 C 1.38628 * 120.41783 * 85.00129 * 3 2 1 9 9 C 1.50703 * 120.79004 * 0.04116 * 8 3 2 10 10 H 1.08999 * 109.47228 * 324.97855 * 9 8 3 11 11 C 1.53007 * 109.47204 * 84.97887 * 9 8 3 12 12 N 1.46903 * 109.47306 * 204.98011 * 9 8 3 13 13 C 1.46895 * 111.00084 * 156.66178 * 12 9 8 14 14 H 1.09003 * 109.47171 * 32.66841 * 13 12 9 15 15 C 1.53002 * 109.47106 * 152.66176 * 13 12 9 16 16 C 1.50698 * 109.47337 * 272.66285 * 13 12 9 17 17 H 1.07996 * 119.99917 * 359.97438 * 16 13 12 18 18 C 1.37882 * 120.00045 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99830 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99854 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46916 * 60.00162 * 20 18 16 22 22 H 1.48502 * 109.46725 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47068 * 299.99787 * 20 18 16 24 24 H 1.09000 * 109.47249 * 299.99718 * 1 2 3 25 25 H 1.09002 * 109.47235 * 60.00229 * 1 2 3 26 26 H 1.09006 * 109.46529 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47249 * 240.00282 * 2 1 3 28 28 H 1.09002 * 109.47235 * 119.99771 * 2 1 3 29 29 H 1.08001 * 119.61844 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.61750 * 180.31330 * 6 5 4 31 31 H 1.08000 * 120.41782 * 179.70298 * 7 6 5 32 32 H 1.08991 * 109.46903 * 185.96032 * 11 9 8 33 33 H 1.09003 * 109.46435 * 305.96082 * 11 9 8 34 34 H 1.08998 * 109.46909 * 65.95324 * 11 9 8 35 35 H 1.00896 * 110.99829 * 32.70262 * 12 9 8 36 36 H 1.09000 * 109.47271 * 180.10135 * 15 13 12 37 37 H 1.09006 * 109.47312 * 300.09809 * 15 13 12 38 38 H 1.08995 * 109.47382 * 60.09518 * 15 13 12 39 39 H 0.96993 * 119.99866 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3630 2.0463 -1.1874 5 7 2.8026 3.2894 -1.1954 6 6 2.9386 3.9840 -0.0825 7 6 2.6332 3.4228 1.1428 8 6 2.1680 2.1174 1.1909 9 6 1.8185 1.4711 2.5067 10 1 0.9679 0.8035 2.3690 11 6 3.0184 0.6700 3.0161 12 7 1.4720 2.5100 3.4858 13 6 0.6226 1.9650 4.5532 14 1 0.8912 0.9246 4.7359 15 6 0.8284 2.7771 5.8335 16 6 -0.8230 2.0446 4.1349 17 1 -1.0846 2.4590 3.1725 18 6 -1.8117 1.5894 4.9813 19 7 -1.4932 1.0853 6.1534 20 14 -3.6036 1.6888 4.4629 21 1 -3.8039 0.9005 3.2205 22 1 -4.4622 1.1377 5.5420 23 1 -3.9690 3.1064 4.2141 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.2594 1.5109 -2.1196 30 1 3.2969 5.0017 -0.1290 31 1 2.7512 3.9951 2.0510 32 1 2.7329 0.1179 3.9114 33 1 3.3417 -0.0297 2.2453 34 1 3.8353 1.3511 3.2542 35 1 1.0280 3.2967 3.0364 36 1 0.1995 2.3717 6.6261 37 1 1.8744 2.7210 6.1352 38 1 0.5582 3.8172 5.6515 39 1 -2.1887 0.7654 6.7489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309636400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:59 Heat of formation + Delta-G solvation = 16.537848 kcal Electronic energy + Delta-G solvation = -18565.219538 eV Core-core repulsion = 15892.945325 eV Total energy + Delta-G solvation = -2672.274212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26799 -36.72427 -34.63380 -33.28465 -31.37464 -29.90420 -29.23628 -27.25337 -25.09176 -24.22962 -23.74282 -21.36603 -20.31881 -19.74002 -16.90278 -16.50089 -16.04650 -15.11572 -14.75136 -14.29589 -14.09955 -13.75762 -13.55730 -13.28295 -13.03366 -12.44336 -12.35059 -11.97426 -11.89861 -11.66875 -11.29227 -11.06987 -11.02542 -10.91684 -10.86324 -10.57748 -10.30151 -10.08354 -9.98878 -9.19437 -9.14540 -9.04939 -8.69778 -8.44684 -7.39294 -6.05420 -4.17729 1.35462 1.53942 3.24329 3.29891 3.32447 4.02458 4.35087 4.63787 4.83097 5.01032 5.05108 5.09517 5.21865 5.38973 5.51560 5.58175 5.58959 5.80595 5.91766 5.95476 6.02951 6.06434 6.10266 6.28690 6.33623 6.43494 6.57559 6.64300 6.76621 6.86270 6.98012 7.11324 7.26757 7.45595 7.69642 8.01769 8.09097 8.17947 8.24991 8.56467 8.93846 9.50365 10.96012 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.007022 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.249044 B = 3986.401020 C = 4414.127858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.131 4.131 4 C 0.092 3.908 5 N -0.494 5.494 6 C 0.084 3.916 7 C -0.155 4.155 8 C -0.027 4.027 9 C 0.120 3.880 10 H 0.066 0.934 11 C -0.131 4.131 12 N -0.685 5.685 13 C 0.209 3.791 14 H 0.033 0.967 15 C -0.124 4.124 16 C -0.546 4.546 17 H 0.052 0.948 18 C 0.069 3.931 19 N -0.885 5.885 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.330 0.670 36 H 0.081 0.919 37 H 0.013 0.987 38 H 0.024 0.976 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 -0.574 -9.783 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 C -0.133 4.133 4 C -0.065 4.065 5 N -0.203 5.203 6 C -0.072 4.072 7 C -0.175 4.175 8 C -0.035 4.035 9 C 0.010 3.990 10 H 0.084 0.916 11 C -0.189 4.189 12 N -0.316 5.316 13 C 0.101 3.899 14 H 0.051 0.949 15 C -0.183 4.183 16 C -0.585 4.585 17 H 0.070 0.930 18 C -0.133 4.133 19 N -0.523 5.523 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.165 0.835 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.100 0.900 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.511 -0.340 -10.030 12.536 hybrid contribution -2.207 -0.367 0.115 2.241 sum 5.304 -0.707 -9.915 11.267 Atomic orbital electron populations 1.21782 0.94336 1.01952 1.02708 1.20504 0.96554 0.91983 1.02893 1.20784 1.00971 0.97894 0.93697 1.22501 0.95942 0.91088 0.97012 1.67598 1.13458 1.07753 1.31469 1.22672 0.97117 0.99498 0.87959 1.22136 0.99743 0.95854 0.99752 1.20547 0.93848 0.93803 0.95299 1.20405 0.97549 0.94106 0.86967 0.91625 1.21757 0.97589 0.99026 1.00516 1.61100 1.49494 1.08407 1.12619 1.19165 0.88921 0.94318 0.87455 0.94860 1.21679 0.97550 0.98604 1.00450 1.21778 0.92433 1.41757 1.02519 0.93021 1.24906 0.98803 0.94784 0.94853 1.69866 1.33068 1.40879 1.08504 0.86740 0.85107 0.78441 0.78229 1.20337 1.21162 1.20269 0.91416 0.92961 0.92327 0.91245 0.90351 0.83495 0.83240 0.83793 0.91995 0.93460 0.92390 0.85250 0.90047 0.96816 0.95704 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.75 37.16 0.36 -1.69 16 2 C -0.08 -1.04 5.41 -27.88 -0.15 -1.19 16 3 C -0.13 -1.91 5.15 -104.48 -0.54 -2.45 16 4 C 0.09 1.29 10.84 -17.55 -0.19 1.10 16 5 N -0.49 -7.50 10.36 -13.25 -0.14 -7.64 16 6 C 0.08 1.19 11.18 -17.55 -0.20 0.99 16 7 C -0.15 -2.34 8.96 -39.44 -0.35 -2.69 16 8 C -0.03 -0.43 4.95 -104.32 -0.52 -0.94 16 9 C 0.12 2.14 1.99 -68.86 -0.14 2.00 16 10 H 0.07 1.30 5.43 -51.93 -0.28 1.02 16 11 C -0.13 -2.13 9.13 37.16 0.34 -1.79 16 12 N -0.69 -13.80 5.34 -102.17 -0.55 -14.34 16 13 C 0.21 5.03 2.39 -68.87 -0.16 4.86 16 14 H 0.03 0.88 7.05 -51.93 -0.37 0.51 16 15 C -0.12 -2.98 9.29 37.16 0.35 -2.63 16 16 C -0.55 -14.34 8.37 -34.44 -0.29 -14.63 16 17 H 0.05 1.36 7.71 -52.49 -0.40 0.96 16 18 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 19 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 20 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.07 1.12 6.87 -51.93 -0.36 0.77 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 28 H 0.08 1.03 5.89 -51.93 -0.31 0.73 16 29 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.14 2.11 7.12 -52.49 -0.37 1.74 16 32 H 0.06 1.07 7.42 -51.93 -0.39 0.69 16 33 H 0.05 0.67 7.00 -51.93 -0.36 0.30 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.33 6.69 7.04 -39.29 -0.28 6.42 16 36 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -27.77 311.40 -7.91 -35.68 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.94 Total: 7.01 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.58 Total: -17.29 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.06 Total: -45.92 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.77 -7.91 -35.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309636400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.213 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds