Wall clock time and date at job start Mon Mar 30 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46751 * 2 1 4 4 C 1.38219 * 120.42211 * 265.02416 * 3 2 1 5 5 N 1.31856 * 120.76727 * 179.97438 * 4 3 2 6 6 C 1.31881 * 121.72135 * 359.70036 * 5 4 3 7 7 C 1.38187 * 120.76512 * 0.58946 * 6 5 4 8 8 C 1.38628 * 120.41783 * 85.00129 * 3 2 1 9 9 C 1.50703 * 120.79004 * 0.04116 * 8 3 2 10 10 H 1.08999 * 109.47228 * 324.97855 * 9 8 3 11 11 C 1.53007 * 109.47204 * 84.97887 * 9 8 3 12 12 N 1.46903 * 109.47306 * 204.98011 * 9 8 3 13 13 C 1.46895 * 111.00084 * 156.66178 * 12 9 8 14 14 H 1.09003 * 109.47171 * 32.66841 * 13 12 9 15 15 C 1.53002 * 109.47106 * 152.66176 * 13 12 9 16 16 C 1.50698 * 109.47337 * 272.66285 * 13 12 9 17 17 H 1.07996 * 119.99917 * 359.97438 * 16 13 12 18 18 C 1.37882 * 120.00045 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99830 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99854 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46916 * 60.00162 * 20 18 16 22 22 H 1.48502 * 109.46725 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47068 * 299.99787 * 20 18 16 24 24 H 1.09000 * 109.47249 * 299.99718 * 1 2 3 25 25 H 1.09002 * 109.47235 * 60.00229 * 1 2 3 26 26 H 1.09006 * 109.46529 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47249 * 240.00282 * 2 1 3 28 28 H 1.09002 * 109.47235 * 119.99771 * 2 1 3 29 29 H 1.08001 * 119.61844 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.61750 * 180.31330 * 6 5 4 31 31 H 1.08000 * 120.41782 * 179.70298 * 7 6 5 32 32 H 1.08991 * 109.46903 * 185.96032 * 11 9 8 33 33 H 1.09003 * 109.46435 * 305.96082 * 11 9 8 34 34 H 1.08998 * 109.46909 * 65.95324 * 11 9 8 35 35 H 1.00896 * 110.99829 * 32.70262 * 12 9 8 36 36 H 1.09000 * 109.47271 * 180.10135 * 15 13 12 37 37 H 1.09006 * 109.47312 * 300.09809 * 15 13 12 38 38 H 1.08995 * 109.47382 * 60.09518 * 15 13 12 39 39 H 0.96993 * 119.99866 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3630 2.0463 -1.1874 5 7 2.8026 3.2894 -1.1954 6 6 2.9386 3.9840 -0.0825 7 6 2.6332 3.4228 1.1428 8 6 2.1680 2.1174 1.1909 9 6 1.8185 1.4711 2.5067 10 1 0.9679 0.8035 2.3690 11 6 3.0184 0.6700 3.0161 12 7 1.4720 2.5100 3.4858 13 6 0.6226 1.9650 4.5532 14 1 0.8912 0.9246 4.7359 15 6 0.8284 2.7771 5.8335 16 6 -0.8230 2.0446 4.1349 17 1 -1.0846 2.4590 3.1725 18 6 -1.8117 1.5894 4.9813 19 7 -1.4932 1.0853 6.1534 20 14 -3.6036 1.6888 4.4629 21 1 -3.8039 0.9005 3.2205 22 1 -4.4622 1.1377 5.5420 23 1 -3.9690 3.1064 4.2141 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.2594 1.5109 -2.1196 30 1 3.2969 5.0017 -0.1290 31 1 2.7512 3.9951 2.0510 32 1 2.7329 0.1179 3.9114 33 1 3.3417 -0.0297 2.2453 34 1 3.8353 1.3511 3.2542 35 1 1.0280 3.2967 3.0364 36 1 0.1995 2.3717 6.6261 37 1 1.8744 2.7210 6.1352 38 1 0.5582 3.8172 5.6515 39 1 -2.1887 0.7654 6.7489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309636400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:59 Heat of formation + Delta-G solvation = 0.725124 kcal Electronic energy + Delta-G solvation = -18565.905229 eV Core-core repulsion = 15892.945325 eV Total energy + Delta-G solvation = -2672.959903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.43091 -38.28225 -35.98839 -34.87349 -33.01413 -31.27435 -30.42134 -28.92212 -27.16108 -25.43530 -24.90735 -22.70436 -21.74426 -21.32081 -18.75294 -17.73563 -17.47962 -16.69331 -16.21443 -15.76741 -15.31208 -15.18150 -14.90228 -14.50222 -14.42658 -14.17327 -13.55946 -13.46851 -13.31289 -13.06999 -12.91041 -12.83979 -12.76480 -12.36206 -12.20205 -12.09502 -12.00043 -11.82815 -11.70517 -11.11350 -10.51935 -10.33475 -10.30383 -9.79904 -9.13662 -8.09403 -6.29825 0.24703 0.35583 1.36634 1.37919 1.44913 2.37790 2.89810 3.12665 3.47929 3.61707 3.73830 3.91076 4.01756 4.17222 4.38212 4.45078 4.45915 4.56056 4.62574 4.76931 4.83967 4.87470 4.96021 4.98921 5.05045 5.10782 5.16468 5.22371 5.29851 5.33315 5.40772 5.46043 5.56084 5.68997 5.85897 6.06108 6.14008 6.34395 6.75665 6.96265 7.07028 7.41670 8.89008 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.007022 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.249044 B = 3986.401020 C = 4414.127858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.134 4.134 4 C 0.092 3.908 5 N -0.507 5.507 6 C 0.085 3.915 7 C -0.162 4.162 8 C -0.044 4.044 9 C 0.124 3.876 10 H 0.043 0.957 11 C -0.124 4.124 12 N -0.676 5.676 13 C 0.216 3.784 14 H 0.006 0.994 15 C -0.115 4.115 16 C -0.555 4.555 17 H 0.046 0.954 18 C 0.024 3.976 19 N -0.910 5.910 20 Si 0.944 3.056 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.274 1.274 24 H 0.029 0.971 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.144 0.856 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.330 0.670 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.025 0.975 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -0.443 -11.656 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.137 4.137 4 C -0.065 4.065 5 N -0.216 5.216 6 C -0.071 4.071 7 C -0.182 4.182 8 C -0.052 4.052 9 C 0.014 3.986 10 H 0.060 0.940 11 C -0.182 4.182 12 N -0.306 5.306 13 C 0.108 3.892 14 H 0.024 0.976 15 C -0.173 4.173 16 C -0.595 4.595 17 H 0.064 0.936 18 C -0.176 4.176 19 N -0.549 5.549 20 Si 0.770 3.230 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.199 1.199 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.193 0.807 30 H 0.194 0.806 31 H 0.162 0.838 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.825 -0.205 -11.912 14.253 hybrid contribution -2.265 -0.410 0.658 2.394 sum 5.560 -0.615 -11.254 12.568 Atomic orbital electron populations 1.21736 0.95101 1.02357 1.01210 1.20533 0.95744 0.91274 1.04083 1.20955 1.00729 0.98635 0.93331 1.22955 0.94816 0.90877 0.97829 1.67682 1.13840 1.08337 1.31771 1.23064 0.96297 1.00538 0.87246 1.22192 1.00116 0.95554 1.00373 1.20459 0.95363 0.94571 0.94810 1.20328 0.97264 0.93273 0.87716 0.93952 1.21695 0.96931 0.99137 1.00460 1.61029 1.47967 1.08862 1.12743 1.18929 0.88593 0.92957 0.88763 0.97566 1.21529 0.97887 0.98265 0.99660 1.22024 0.93749 1.41466 1.02214 0.93593 1.25594 1.02481 0.94625 0.94921 1.69982 1.34092 1.41549 1.09285 0.85826 0.80754 0.78433 0.77943 1.19940 1.20741 1.19939 0.95179 0.92030 0.91028 0.88084 0.91083 0.80653 0.80609 0.83826 0.93715 0.91185 0.92064 0.85324 0.92457 0.95356 0.95582 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.75 71.98 0.70 -3.14 16 2 C -0.08 -1.86 5.41 29.85 0.16 -1.70 16 3 C -0.13 -3.67 5.15 -19.77 -0.10 -3.77 16 4 C 0.09 2.33 10.84 84.68 0.92 3.25 16 5 N -0.51 -14.12 10.36 -195.85 -2.03 -16.15 16 6 C 0.08 2.22 11.18 84.67 0.95 3.17 16 7 C -0.16 -4.71 8.96 22.36 0.20 -4.51 16 8 C -0.04 -1.36 4.95 -19.67 -0.10 -1.46 16 9 C 0.12 4.46 1.99 44.17 0.09 4.55 16 10 H 0.04 1.74 5.43 -2.39 -0.01 1.72 16 11 C -0.12 -4.01 9.13 71.98 0.66 -3.36 16 12 N -0.68 -27.49 5.34 -477.14 -2.55 -30.03 16 13 C 0.22 10.62 2.39 44.17 0.11 10.73 16 14 H 0.01 0.35 7.05 -2.39 -0.02 0.33 16 15 C -0.11 -5.57 9.29 71.98 0.67 -4.90 16 16 C -0.56 -29.65 8.37 25.60 0.21 -29.44 16 17 H 0.05 2.46 7.71 -2.91 -0.02 2.43 16 18 C 0.02 1.31 5.30 84.66 0.45 1.76 16 19 N -0.91 -51.34 11.32 21.45 0.24 -51.10 16 20 Si 0.94 42.96 29.54 68.60 2.03 44.98 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 H 0.03 1.00 6.87 -2.39 -0.02 0.98 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.10 1.77 8.06 -2.39 -0.02 1.75 16 28 H 0.07 1.79 5.89 -2.39 -0.01 1.77 16 29 H 0.18 3.34 8.06 -2.91 -0.02 3.31 16 30 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 31 H 0.14 4.10 7.12 -2.91 -0.02 4.08 16 32 H 0.04 1.57 7.42 -2.39 -0.02 1.55 16 33 H 0.07 1.91 7.00 -2.39 -0.02 1.89 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.33 13.45 7.04 -89.70 -0.63 12.82 16 36 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 37 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -59.11 311.40 3.01 -56.10 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.40 Total: 25.03 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 4.91 Total: -28.83 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -4.33 Total: -97.28 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -59.11 3.01 -56.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309636400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.824 kcal (2) G-P(sol) polarization free energy of solvation -59.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds