Wall clock time and date at job start Mon Mar 30 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42063 * 2 1 4 4 N 1.31860 * 120.76284 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41886 * 180.02562 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47196 * 84.97951 * 8 7 2 10 10 N 1.46901 * 109.47156 * 179.97438 * 9 8 7 11 11 C 1.46905 * 110.99862 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.46970 * 35.00382 * 11 10 9 13 13 C 1.52995 * 109.47315 * 275.00132 * 11 10 9 14 14 C 1.53002 * 109.46856 * 155.00213 * 11 10 9 15 15 C 1.50698 * 109.47292 * 295.00232 * 14 11 10 16 16 H 1.08000 * 120.00032 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00441 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00479 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99631 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47003 * 89.99784 * 19 17 15 21 21 H 1.48501 * 109.46910 * 209.99674 * 19 17 15 22 22 H 1.48502 * 109.47171 * 329.99633 * 19 17 15 23 23 H 1.08997 * 109.47353 * 269.97881 * 1 2 3 24 24 H 1.09002 * 109.46888 * 29.97191 * 1 2 3 25 25 H 1.09001 * 109.47592 * 149.97449 * 1 2 3 26 26 H 1.07999 * 119.62072 * 0.05069 * 3 2 1 27 27 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 28 28 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.46909 * 204.97455 * 8 7 2 30 30 H 1.08993 * 109.47161 * 324.97276 * 8 7 2 31 31 H 1.09004 * 109.47233 * 299.99768 * 9 8 7 32 32 H 1.09005 * 109.47259 * 59.99816 * 9 8 7 33 33 H 1.00900 * 110.99672 * 56.04837 * 10 9 8 34 34 H 1.08997 * 109.47069 * 180.02562 * 13 11 10 35 35 H 1.09003 * 109.47043 * 300.00371 * 13 11 10 36 36 H 1.09001 * 109.47144 * 60.00377 * 13 11 10 37 37 H 1.09005 * 109.46934 * 55.00061 * 14 11 10 38 38 H 1.08993 * 109.46980 * 175.00091 * 14 11 10 39 39 H 0.97000 * 120.00016 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2256 0.0822 -0.0015 6 6 3.5948 -1.1472 -0.0026 7 6 2.2089 -1.1954 -0.0005 8 6 1.4830 -2.5162 -0.0017 9 6 1.1273 -2.9013 -1.4390 10 7 0.4203 -4.1890 -1.4402 11 6 0.0615 -4.5914 -2.8068 12 1 0.8426 -4.2716 -3.4965 13 6 -1.2647 -3.9374 -3.1995 14 6 -0.0822 -6.1133 -2.8692 15 6 1.2548 -6.7555 -2.6025 16 1 2.1205 -6.1397 -2.4083 17 6 1.3729 -8.1292 -2.6063 18 7 2.5398 -8.6896 -2.3740 19 14 -0.1244 -9.1943 -2.9428 20 1 -0.2335 -9.4480 -4.4019 21 1 0.0161 -10.4866 -2.2248 22 1 -1.3458 -8.4951 -2.4691 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6675 2.1276 0.0008 27 1 5.3046 0.1284 -0.0023 28 1 4.1736 -2.0589 -0.0039 29 1 2.1242 -3.2835 0.4319 30 1 0.5703 -2.4296 0.5878 31 1 0.4860 -2.1340 -1.8728 32 1 2.0401 -2.9879 -2.0286 33 1 -0.3959 -4.1539 -0.8480 34 1 -1.5311 -4.2363 -4.2133 35 1 -2.0458 -4.2572 -2.5097 36 1 -1.1624 -2.8531 -3.1551 37 1 -0.7995 -6.4417 -2.1170 38 1 -0.4343 -6.4048 -3.8587 39 1 2.6227 -9.6561 -2.3763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309800404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:10 Heat of formation + Delta-G solvation = 15.398366 kcal Electronic energy + Delta-G solvation = -17624.489141 eV Core-core repulsion = 14952.165518 eV Total energy + Delta-G solvation = -2672.323624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40046 -37.17766 -34.85509 -32.83759 -32.34647 -30.98945 -28.23828 -27.63764 -27.01312 -23.54013 -22.64364 -22.15321 -21.05514 -19.68543 -16.80870 -16.56762 -16.48000 -15.31487 -15.05391 -14.55808 -14.38915 -14.27337 -13.61704 -13.46078 -12.97092 -12.87491 -12.74376 -12.40610 -12.25991 -12.15439 -11.83590 -11.75267 -11.59395 -11.15314 -10.84153 -10.65900 -10.33521 -9.76785 -9.59983 -9.49311 -9.39051 -9.03280 -8.95876 -8.41734 -7.66798 -5.90238 -3.84047 1.06055 1.21389 3.36143 3.43979 3.46764 3.72167 4.38298 4.46047 4.55276 4.66916 4.83565 4.91248 5.03930 5.27064 5.37057 5.38200 5.44117 5.44518 5.49873 5.60340 5.66463 5.76630 5.78112 5.86263 5.90291 5.96277 6.13177 6.24390 6.33482 6.43712 6.48526 6.68886 6.78994 7.14327 7.31077 7.77020 7.90662 7.91386 8.05772 8.72997 9.20886 9.72962 11.23945 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031981 B = 0.004488 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.310353 B = 6237.971957 C = 6860.443576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.138 4.138 3 C 0.094 3.906 4 N -0.491 5.491 5 C 0.090 3.910 6 C -0.163 4.163 7 C -0.030 4.030 8 C -0.084 4.084 9 C 0.070 3.930 10 N -0.662 5.662 11 C 0.098 3.902 12 H 0.069 0.931 13 C -0.183 4.183 14 C -0.004 4.004 15 C -0.489 4.489 16 H 0.076 0.924 17 C 0.060 3.940 18 N -0.910 5.910 19 Si 0.875 3.125 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.268 1.268 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.138 0.862 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.071 0.929 33 H 0.330 0.670 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.016 0.984 38 H 0.012 0.988 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 17.394 4.692 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.139 4.139 3 C -0.063 4.063 4 N -0.200 5.200 5 C -0.066 4.066 6 C -0.182 4.182 7 C -0.039 4.039 8 C -0.122 4.122 9 C -0.060 4.060 10 N -0.292 5.292 11 C -0.011 4.011 12 H 0.088 0.912 13 C -0.242 4.242 14 C -0.042 4.042 15 C -0.527 4.527 16 H 0.094 0.906 17 C -0.139 4.139 18 N -0.550 5.550 19 Si 0.703 3.297 20 H -0.207 1.207 21 H -0.216 1.216 22 H -0.193 1.193 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.168 0.832 27 H 0.171 0.829 28 H 0.156 0.844 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.162 17.639 4.711 18.529 hybrid contribution -1.830 -0.906 -0.369 2.075 sum -4.992 16.733 4.342 17.993 Atomic orbital electron populations 1.20779 0.90466 1.03270 1.02529 1.20814 0.97496 0.93698 1.01941 1.22595 0.90013 0.97227 0.96502 1.67639 1.08304 1.31563 1.12447 1.22712 1.00273 0.87714 0.95949 1.22172 0.94748 0.99900 1.01414 1.20277 0.93747 0.95276 0.94591 1.20660 1.00479 0.92628 0.98394 1.21866 0.98918 0.90510 0.94725 1.60459 1.29548 1.27796 1.11388 1.21550 0.93473 0.97734 0.88337 0.91246 1.22594 1.00061 0.99534 1.02007 1.19606 0.98374 0.90447 0.95760 1.21033 0.94318 0.91392 1.45981 0.90605 1.25016 0.95349 0.98067 0.95479 1.69913 1.23392 1.10288 1.51421 0.86869 0.84438 0.80091 0.78306 1.20663 1.21646 1.19302 0.90969 0.91379 0.90849 0.83199 0.82891 0.84392 0.89227 0.90746 0.96140 0.91055 0.85272 0.92424 0.93009 0.94052 0.96579 0.97007 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.30 36.00 0.33 -0.65 16 2 C -0.14 -1.53 5.90 -104.49 -0.62 -2.14 16 3 C 0.09 1.06 10.86 -17.55 -0.19 0.87 16 4 N -0.49 -6.29 10.36 -13.26 -0.14 -6.43 16 5 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 6 C -0.16 -1.94 9.80 -39.44 -0.39 -2.33 16 7 C -0.03 -0.37 5.17 -104.31 -0.54 -0.91 16 8 C -0.08 -1.06 4.95 -27.88 -0.14 -1.20 16 9 C 0.07 1.02 5.30 -3.82 -0.02 1.00 16 10 N -0.66 -11.59 5.97 -106.72 -0.64 -12.23 16 11 C 0.10 1.87 2.53 -67.71 -0.17 1.70 16 12 H 0.07 1.39 7.80 -51.93 -0.40 0.98 16 13 C -0.18 -2.78 9.16 37.16 0.34 -2.44 16 14 C 0.00 -0.10 3.72 -27.88 -0.10 -0.20 16 15 C -0.49 -13.85 9.39 -34.44 -0.32 -14.17 16 16 H 0.08 2.34 7.99 -52.49 -0.42 1.93 16 17 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 18 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 19 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 25 H 0.07 0.68 5.63 -51.93 -0.29 0.39 16 26 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.07 0.84 7.10 -51.93 -0.37 0.47 16 31 H 0.02 0.28 6.27 -51.93 -0.33 -0.05 16 32 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 33 H 0.33 5.18 8.47 -39.29 -0.33 4.85 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 317.85 15.07 4.79 4.79 Total: -1.00 -32.03 317.85 -8.25 -40.27 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.26 Total: 1.95 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.11 Total: -17.96 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.00 Total: -46.29 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.03 -8.25 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309800404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.670 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds