Wall clock time and date at job start Mon Mar 30 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42063 * 2 1 4 4 N 1.31860 * 120.76284 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41886 * 180.02562 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47196 * 84.97951 * 8 7 2 10 10 N 1.46901 * 109.47156 * 179.97438 * 9 8 7 11 11 C 1.46905 * 110.99862 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.46970 * 35.00382 * 11 10 9 13 13 C 1.52995 * 109.47315 * 275.00132 * 11 10 9 14 14 C 1.53002 * 109.46856 * 155.00213 * 11 10 9 15 15 C 1.50698 * 109.47292 * 295.00232 * 14 11 10 16 16 H 1.08000 * 120.00032 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00441 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00479 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99631 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47003 * 89.99784 * 19 17 15 21 21 H 1.48501 * 109.46910 * 209.99674 * 19 17 15 22 22 H 1.48502 * 109.47171 * 329.99633 * 19 17 15 23 23 H 1.08997 * 109.47353 * 269.97881 * 1 2 3 24 24 H 1.09002 * 109.46888 * 29.97191 * 1 2 3 25 25 H 1.09001 * 109.47592 * 149.97449 * 1 2 3 26 26 H 1.07999 * 119.62072 * 0.05069 * 3 2 1 27 27 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 28 28 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.46909 * 204.97455 * 8 7 2 30 30 H 1.08993 * 109.47161 * 324.97276 * 8 7 2 31 31 H 1.09004 * 109.47233 * 299.99768 * 9 8 7 32 32 H 1.09005 * 109.47259 * 59.99816 * 9 8 7 33 33 H 1.00900 * 110.99672 * 56.04837 * 10 9 8 34 34 H 1.08997 * 109.47069 * 180.02562 * 13 11 10 35 35 H 1.09003 * 109.47043 * 300.00371 * 13 11 10 36 36 H 1.09001 * 109.47144 * 60.00377 * 13 11 10 37 37 H 1.09005 * 109.46934 * 55.00061 * 14 11 10 38 38 H 1.08993 * 109.46980 * 175.00091 * 14 11 10 39 39 H 0.97000 * 120.00016 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2256 0.0822 -0.0015 6 6 3.5948 -1.1472 -0.0026 7 6 2.2089 -1.1954 -0.0005 8 6 1.4830 -2.5162 -0.0017 9 6 1.1273 -2.9013 -1.4390 10 7 0.4203 -4.1890 -1.4402 11 6 0.0615 -4.5914 -2.8068 12 1 0.8426 -4.2716 -3.4965 13 6 -1.2647 -3.9374 -3.1995 14 6 -0.0822 -6.1133 -2.8692 15 6 1.2548 -6.7555 -2.6025 16 1 2.1205 -6.1397 -2.4083 17 6 1.3729 -8.1292 -2.6063 18 7 2.5398 -8.6896 -2.3740 19 14 -0.1244 -9.1943 -2.9428 20 1 -0.2335 -9.4480 -4.4019 21 1 0.0161 -10.4866 -2.2248 22 1 -1.3458 -8.4951 -2.4691 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6675 2.1276 0.0008 27 1 5.3046 0.1284 -0.0023 28 1 4.1736 -2.0589 -0.0039 29 1 2.1242 -3.2835 0.4319 30 1 0.5703 -2.4296 0.5878 31 1 0.4860 -2.1340 -1.8728 32 1 2.0401 -2.9879 -2.0286 33 1 -0.3959 -4.1539 -0.8480 34 1 -1.5311 -4.2363 -4.2133 35 1 -2.0458 -4.2572 -2.5097 36 1 -1.1624 -2.8531 -3.1551 37 1 -0.7995 -6.4417 -2.1170 38 1 -0.4343 -6.4048 -3.8587 39 1 2.6227 -9.6561 -2.3763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309800404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:10 Heat of formation + Delta-G solvation = -5.500179 kcal Electronic energy + Delta-G solvation = -17625.395370 eV Core-core repulsion = 14952.165518 eV Total energy + Delta-G solvation = -2673.229853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29363 -38.55429 -36.00251 -34.60312 -33.50235 -32.35647 -29.84009 -28.84363 -27.91252 -24.93429 -24.08519 -23.21821 -22.10225 -21.25891 -18.75940 -17.72240 -17.42245 -16.64413 -16.22338 -15.93816 -15.78226 -15.38112 -15.00990 -14.58528 -14.26509 -14.06104 -13.93798 -13.57925 -13.52158 -13.37880 -13.16794 -12.97497 -12.74866 -12.50886 -12.36734 -12.07559 -11.88957 -11.60540 -11.42948 -11.14310 -10.66424 -10.40150 -10.37625 -9.80632 -9.00981 -8.15956 -6.14916 0.19143 0.28350 1.39003 1.41164 1.52338 2.44213 2.82005 3.16617 3.32601 3.59471 3.80581 3.94311 4.04320 4.07162 4.14598 4.26168 4.29332 4.48300 4.52165 4.56865 4.58524 4.79282 4.82426 4.89251 4.90675 4.99967 5.07629 5.14652 5.15782 5.21908 5.30237 5.32678 5.50420 5.54936 5.77999 5.82604 6.32445 6.51103 6.76983 6.93497 7.02739 7.45870 9.01731 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031981 B = 0.004488 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.310353 B = 6237.971957 C = 6860.443576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.136 4.136 3 C 0.087 3.913 4 N -0.511 5.511 5 C 0.081 3.919 6 C -0.176 4.176 7 C -0.045 4.045 8 C -0.072 4.072 9 C 0.079 3.921 10 N -0.685 5.685 11 C 0.102 3.898 12 H 0.049 0.951 13 C -0.170 4.170 14 C -0.003 4.003 15 C -0.490 4.490 16 H 0.031 0.969 17 C -0.006 4.006 18 N -0.961 5.961 19 Si 0.948 3.052 20 H -0.271 1.271 21 H -0.291 1.291 22 H -0.246 1.246 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.177 0.823 27 H 0.172 0.828 28 H 0.138 0.862 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.342 0.658 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 18.660 4.676 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.138 4.138 3 C -0.070 4.070 4 N -0.220 5.220 5 C -0.075 4.075 6 C -0.195 4.195 7 C -0.054 4.054 8 C -0.110 4.110 9 C -0.050 4.050 10 N -0.317 5.317 11 C -0.008 4.008 12 H 0.067 0.933 13 C -0.229 4.229 14 C -0.041 4.041 15 C -0.529 4.529 16 H 0.049 0.951 17 C -0.201 4.201 18 N -0.604 5.604 19 Si 0.772 3.228 20 H -0.196 1.196 21 H -0.217 1.217 22 H -0.170 1.170 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.194 0.806 27 H 0.189 0.811 28 H 0.155 0.845 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.019 18.933 4.696 20.414 hybrid contribution -0.843 -1.231 -0.340 1.530 sum -6.862 17.702 4.356 19.479 Atomic orbital electron populations 1.20838 0.88450 1.03991 1.03590 1.21078 0.98933 0.92996 1.00772 1.23074 0.89740 0.98438 0.95759 1.67679 1.09295 1.31959 1.13083 1.23014 1.01298 0.87384 0.95761 1.22301 0.95134 1.00222 1.01875 1.20324 0.93902 0.95487 0.95654 1.20505 1.00928 0.92449 0.97123 1.21745 0.97710 0.89745 0.95793 1.60292 1.30518 1.29833 1.11022 1.21325 0.95337 0.95183 0.88962 0.93251 1.22429 0.97539 1.00516 1.02453 1.19581 0.95260 0.93429 0.95820 1.21324 0.95389 0.91310 1.44870 0.95090 1.25990 0.98721 0.99826 0.95528 1.70092 1.26177 1.10671 1.53457 0.85699 0.80753 0.77778 0.78538 1.19628 1.21702 1.16963 0.89648 0.89538 0.91206 0.80606 0.81077 0.84451 0.91194 0.88888 0.94133 0.93808 0.83893 0.91930 0.91761 0.91865 0.96214 0.96390 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.30 71.23 0.66 -0.93 16 2 C -0.14 -2.76 5.90 -19.78 -0.12 -2.88 16 3 C 0.09 1.80 10.86 84.68 0.92 2.72 16 4 N -0.51 -12.59 10.36 -195.85 -2.03 -14.62 16 5 C 0.08 1.88 11.18 84.67 0.95 2.83 16 6 C -0.18 -4.26 9.80 22.36 0.22 -4.04 16 7 C -0.05 -1.07 5.17 -19.67 -0.10 -1.17 16 8 C -0.07 -1.80 4.95 29.85 0.15 -1.65 16 9 C 0.08 2.29 5.30 86.30 0.46 2.75 16 10 N -0.69 -23.59 5.97 -491.55 -2.93 -26.52 16 11 C 0.10 3.76 2.53 44.91 0.11 3.87 16 12 H 0.05 1.99 7.80 -2.39 -0.02 1.98 16 13 C -0.17 -4.63 9.16 71.98 0.66 -3.98 16 14 C 0.00 -0.14 3.72 29.85 0.11 -0.03 16 15 C -0.49 -28.42 9.39 25.60 0.24 -28.18 16 16 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 17 C -0.01 -0.37 5.47 84.65 0.46 0.09 16 18 N -0.96 -61.87 13.96 21.45 0.30 -61.57 16 19 Si 0.95 44.97 27.47 68.60 1.88 46.86 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 0.93 8.09 -2.39 -0.02 0.91 16 25 H 0.07 1.06 5.63 -2.39 -0.01 1.05 16 26 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 27 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.09 1.94 7.10 -2.39 -0.02 1.93 16 31 H 0.04 1.02 6.27 -2.38 -0.01 1.00 16 32 H 0.04 1.49 8.06 -2.38 -0.02 1.47 16 33 H 0.34 10.12 8.47 -89.69 -0.76 9.36 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 36 H 0.06 1.46 7.45 -2.39 -0.02 1.44 16 37 H 0.02 0.89 7.20 -2.38 -0.02 0.87 16 38 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 39 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -70.63 317.85 2.15 -68.47 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.21 Total: 17.98 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 4.72 Total: -30.59 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.66 Total: -102.71 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -70.63 2.15 -68.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309800404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.973 kcal (2) G-P(sol) polarization free energy of solvation -70.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds