Wall clock time and date at job start Mon Mar 30 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38670 * 120.41705 * 2 1 4 4 C 1.38628 * 118.42206 * 180.24106 * 3 2 1 5 5 C 1.38231 * 119.16056 * 359.74989 * 4 3 2 6 6 N 1.31865 * 120.76114 * 0.02562 * 5 4 3 7 7 C 1.31882 * 121.72591 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.61677 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.46886 * 89.99893 * 8 7 6 10 10 C 1.46899 * 110.99495 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47039 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.46722 * 304.99519 * 11 10 9 13 13 C 1.53002 * 109.47082 * 64.99745 * 11 10 9 14 14 C 1.53002 * 109.47358 * 184.99616 * 11 10 9 15 15 C 1.50696 * 109.46919 * 174.99744 * 14 11 10 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 H 1.08996 * 109.47407 * 270.25456 * 1 2 3 24 24 H 1.09002 * 109.46935 * 30.25785 * 1 2 3 25 25 H 1.09008 * 109.46999 * 150.24978 * 1 2 3 26 26 H 1.08001 * 120.79099 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.42359 * 179.72962 * 4 3 2 28 28 H 1.07996 * 119.62111 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.47189 * 329.99701 * 8 7 6 30 30 H 1.09000 * 109.47286 * 209.99441 * 8 7 6 31 31 H 1.00896 * 110.99778 * 56.04796 * 9 8 7 32 32 H 1.08995 * 109.48028 * 59.99869 * 10 9 8 33 33 H 1.09001 * 109.47280 * 299.99463 * 10 9 8 34 34 H 1.09000 * 109.47048 * 180.02562 * 13 11 10 35 35 H 1.09001 * 109.46743 * 300.00081 * 13 11 10 36 36 H 1.08994 * 109.47199 * 60.00238 * 13 11 10 37 37 H 1.09000 * 109.46497 * 55.00010 * 14 11 10 38 38 H 1.08999 * 109.46623 * 295.00074 * 14 11 10 39 39 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1476 -0.0051 5 6 4.2257 -0.0822 -0.0048 6 7 3.5255 -1.1996 -0.0001 7 6 2.2067 -1.1916 0.0038 8 6 1.4540 -2.4972 0.0084 9 7 1.2136 -2.9189 1.3950 10 6 0.4809 -4.1913 1.4386 11 6 0.2493 -4.5967 2.8957 12 1 1.2041 -4.6269 3.4206 13 6 -0.6709 -3.5764 3.5689 14 6 -0.4025 -5.9802 2.9428 15 6 -0.5184 -6.4323 4.3756 16 1 -0.1625 -5.7967 5.1729 17 6 -1.0780 -7.6579 4.6686 18 7 -1.5056 -8.4346 3.6973 19 14 -1.2211 -8.2187 6.4447 20 1 -2.5222 -7.7697 7.0022 21 1 -1.1421 -9.7004 6.5039 22 1 -0.1129 -7.6318 7.2400 23 1 -0.3634 0.0046 1.0276 24 1 -0.3633 0.8877 -0.5178 25 1 -0.3633 -0.8923 -0.5100 26 1 1.6889 2.1423 0.0004 27 1 4.1735 2.0593 -0.0097 28 1 5.3046 -0.1285 -0.0083 29 1 2.0420 -3.2574 -0.5058 30 1 0.4999 -2.3684 -0.5027 31 1 0.7258 -2.2024 1.9114 32 1 1.0624 -4.9631 0.9345 33 1 -0.4799 -4.0747 0.9373 34 1 -0.8355 -3.8649 4.6070 35 1 -0.2065 -2.5908 3.5353 36 1 -1.6256 -3.5463 3.0440 37 1 0.2102 -6.6895 2.3864 38 1 -1.3955 -5.9293 2.4962 39 1 -1.4310 -8.1436 2.7750 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309804175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:02 Heat of formation + Delta-G solvation = 8.904921 kcal Electronic energy + Delta-G solvation = -17475.965764 eV Core-core repulsion = 14803.360563 eV Total energy + Delta-G solvation = -2672.605201 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50781 -37.09377 -34.63186 -33.66392 -32.56477 -31.19568 -27.82736 -26.71516 -26.34555 -24.44256 -22.69616 -22.28148 -21.49917 -19.24292 -16.98505 -16.84860 -16.62196 -15.52948 -15.07498 -14.78424 -14.14761 -13.83409 -13.67776 -13.51409 -13.26677 -13.11781 -12.86919 -12.72255 -12.34195 -11.84867 -11.66281 -11.61799 -11.22411 -11.00370 -10.67303 -10.24856 -10.06531 -9.90217 -9.81968 -9.52731 -9.41797 -8.99100 -8.44511 -8.26636 -8.18068 -6.29427 -3.97302 0.91708 1.12189 3.46795 3.51105 3.57674 3.66665 4.14189 4.43170 4.58784 4.59910 4.66774 4.73884 4.83955 5.16115 5.26859 5.33206 5.45508 5.46640 5.47550 5.66246 5.68746 5.74677 5.83690 5.96238 5.99682 6.07458 6.16235 6.38027 6.47978 6.54599 6.82303 7.03227 7.05250 7.25139 7.46136 7.55057 7.65381 7.93025 8.30324 8.54100 8.96011 9.74045 11.11145 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.044099 B = 0.003653 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.784811 B = 7663.948988 C = 7730.239409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.134 4.134 3 C -0.079 4.079 4 C -0.175 4.175 5 C 0.093 3.907 6 N -0.463 5.463 7 C 0.138 3.862 8 C 0.102 3.898 9 N -0.679 5.679 10 C 0.065 3.935 11 C -0.077 4.077 12 H 0.067 0.933 13 C -0.133 4.133 14 C 0.015 3.985 15 C -0.593 4.593 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 1.070 2.930 20 H -0.289 1.289 21 H -0.285 1.285 22 H -0.289 1.289 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.154 0.846 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.337 0.663 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.040 0.960 37 H 0.007 0.993 38 H 0.005 0.995 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 20.121 -8.992 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.195 4.195 5 C -0.064 4.064 6 N -0.171 5.171 7 C 0.000 4.000 8 C -0.027 4.027 9 N -0.311 5.311 10 C -0.064 4.064 11 C -0.096 4.096 12 H 0.086 0.914 13 C -0.190 4.190 14 C -0.023 4.023 15 C -0.632 4.632 16 H 0.068 0.932 17 C -0.191 4.191 18 N -0.554 5.554 19 Si 0.899 3.101 20 H -0.216 1.216 21 H -0.211 1.211 22 H -0.215 1.215 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.172 0.828 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.156 0.844 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.023 0.977 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.456 17.757 -7.968 20.506 hybrid contribution -0.682 2.521 -1.242 2.892 sum 5.774 20.278 -9.210 23.008 Atomic orbital electron populations 1.20855 0.90338 1.03252 1.02975 1.20777 0.97533 0.93739 1.01563 1.21442 0.94205 0.97903 0.96900 1.22123 0.95257 0.99624 1.02523 1.22780 1.00344 0.87658 0.95666 1.67524 1.07754 1.31252 1.10601 1.21065 0.89768 0.94320 0.94860 1.20853 0.97325 0.92677 0.91860 1.60522 1.53506 1.06151 1.10886 1.22180 0.94916 0.90146 0.99135 1.21089 0.99292 0.97129 0.92130 0.91430 1.21730 0.98379 0.96762 1.02171 1.19238 0.94626 0.90626 0.97763 1.22063 1.43700 1.05205 0.92209 0.93176 1.25823 0.93816 0.93569 1.05896 1.70747 1.44791 1.38841 1.00975 0.83532 0.76182 0.76151 0.74277 1.21589 1.21078 1.21494 0.90606 0.91274 0.90797 0.85009 0.84952 0.82840 0.89357 0.93474 0.84407 0.91249 0.95751 0.91695 0.94936 0.94068 0.97524 0.97673 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.62 36.01 0.35 -0.67 16 2 C -0.13 -1.45 5.90 -104.48 -0.62 -2.06 16 3 C -0.08 -0.73 9.86 -39.28 -0.39 -1.11 16 4 C -0.18 -1.57 10.11 -39.44 -0.40 -1.97 16 5 C 0.09 1.01 11.18 -17.54 -0.20 0.82 16 6 N -0.46 -6.50 10.27 -9.47 -0.10 -6.60 16 7 C 0.14 1.83 6.29 -82.59 -0.52 1.31 16 8 C 0.10 1.38 5.57 -4.97 -0.03 1.36 16 9 N -0.68 -10.59 6.49 -115.05 -0.75 -11.33 16 10 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 11 C -0.08 -1.62 2.55 -90.62 -0.23 -1.86 16 12 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 13 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 14 C 0.01 0.39 3.76 -27.88 -0.10 0.28 16 15 C -0.59 -17.00 8.41 -34.44 -0.29 -17.29 16 16 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 17 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 18 N -0.92 -28.51 13.65 55.43 0.76 -27.75 16 19 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 25 H 0.07 0.65 5.95 -51.92 -0.31 0.34 16 26 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 27 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.56 5.93 -51.93 -0.31 0.25 16 31 H 0.34 4.98 6.98 -39.29 -0.27 4.70 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 1.35 6.95 -51.93 -0.36 0.98 16 35 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.01 0.18 8.00 -51.93 -0.42 -0.24 16 38 H 0.01 0.13 8.01 -51.93 -0.42 -0.28 16 39 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -32.46 318.18 -8.71 -41.17 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.12 Total: 1.04 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.22 Total: -22.03 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.09 Total: -45.68 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.46 -8.71 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309804175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.071 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds